Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02943 and BPUM_1837

See DNA alignment / Visit BSNT_02943 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:28
# Commandline: needle
#    -asequence pep-align/BSNT_02943___yndG.1.24716.seq
#    -bsequence pep-align/BPUM_1837.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02943___yndG-BPUM_1837.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02943___yndG-BPUM_1837.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02943___yndG
# 2: BPUM_1837
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 295
# Identity:     103/295 (34.9%)
# Similarity:   158/295 (53.6%)
# Gaps:          29/295 ( 9.8%)
# Score: 481.5
# 
#
#=======================================

BSNT_02943___      1 MRQKPIYVEIEMKSDLDTLWEYTQNPSLHKEWDLRFSNITYLNSQPCEKQ     50
                     |::||:|||..:.:.::.:||:||||.||::||||||.|:....|..:.|
BPUM_1837          1 MKRKPVYVETTIHAPIEKVWEHTQNPKLHEQWDLRFSTISLNEPQNEQPQ     50

BSNT_02943___     51 KFLYETRVGFGLKVSGTGE-TVRVFNKCSSERSSSLAFGSDHPLSLIRHG     99
                     .||||..:||||.|:|||. ..|:.:: .:||:|||.|.|.||||.|:.|
BPUM_1837         51 SFLYEKHLGFGLSVTGTGAYRTRMMDE-RNERASSLNFKSSHPLSFIKEG     99

BSNT_02943___    100 SGYWKYIQRENGKMTFLTQYQYKTAYGLLGRWIDRLLFRPLLGWATAWSF    149
                     ||||||| :.:..:.|.||:.|||..|....|.|::||||::|:.||:||
BPUM_1837        100 SGYWKYI-KTSDHIVFQTQFDYKTKEGKGWTWADKILFRPMIGFMTAFSF    148

BSNT_02943___    150 DALRLWVEQNKHPKRFIRSAIIYVFMCLFFSLFWFYQGFAGVETSILAGT    199
                     .||:.|:|:..||:..:...:.:..:||.|::.|..|.......|....:
BPUM_1837        149 GALKTWLEKGTHPRLLLERTLAHYGICLLFAIVWLCQAIIPFSHSAFDHS    198

BSNT_02943___    200 AEIG-----LAILWLLPLKRKWIIHGVQACIFAGFACLG-----SEIFMW    239
                     ....     |.:.||:|...|..:..:|:.......|:|     :.:...
BPUM_1837        199 MSFRLFYALLGVAWLMPKLSKKYLFILQSMFLLMMLCIGILSPQTTLHEP    248

BSNT_02943___    240 ILLSVFSAAS--GALSLQ-LPSARRTKRKRKK-------------    268
                     :::|.|...|  |..:|: .......||||..             
BPUM_1837        249 LVMSAFLILSIAGMFNLKDCVDVFSIKRKRGGRHGRSSSSSKGLR    293


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.