Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_01585 and BPUM_0870
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence pep-align/BSNT_01585___yhcR.1.24716.seq
# -bsequence pep-align/BPUM_0870___yhcR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_01585___yhcR-BPUM_0870___yhcR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01585___yhcR-BPUM_0870___yhcR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01585___yhcR
# 2: BPUM_0870___yhcR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1202
# Identity: 642/1202 (53.4%)
# Similarity: 767/1202 (63.8%)
# Gaps: 245/1202 (20.4%)
# Score: 3289.0
#
#
#=======================================
BSNT_01585___ 1 MMRRILHIVLITALMFLNVMYTFEAVKAAEPQQPISIEKAIQQKEGQALV 50
BPUM_0870___y 0 -------------------------------------------------- 0
BSNT_01585___ 51 EGYAVGQAVSPQHYKLTSPFSNDYNVALADRKNETSPDHILPVQIPSAFR 100
.:
BPUM_0870___y 1 ------------------------------------------------MK 2
BSNT_01585___ 101 SQFGLQTNPLLLGKKITVQGKLDNYFNTTGLKNVQSMNVTDDTKTPPAEQ 150
....::....|:....::|..| .|:..|..::.::..: .::
BPUM_0870___y 3 RMLSIRMICCLVLVIFSLQSLL------PGMSAVSEVSASEKKE---IKK 43
BSNT_01585___ 151 QVTINEARGRLNEEVTIKGIITADQNAIGGGKLSTFLQDETGGINIYSPS 200
.|.|.:||..:.|.||:.||:||||:|||.|||||::||::.|||:||..
BPUM_0870___y 44 IVQIKKARQLIGETVTVSGIVTADQSAIGNGKLSTYIQDKSAGINVYSAQ 93
BSNT_01585___ 201 PEQFPELKEGMDVTVTGKITSYQGLKEIVPSSSGIKINQSNQSLPAPKHL 250
|..|||||.||.|||||||.||:||.||||....:|::..||.||..|.:
BPUM_0870___y 94 PNHFPELKAGMKVTVTGKIMSYKGLIEIVPDQGSLKVDTVNQPLPKAKRV 143
BSNT_01585___ 251 TINELINGSLGDQYEGRLVKLTAFVSSIPSSPAGGGYNVTMIDDDHHAMT 300
::.:|.....| ::||||||:..:|.:.|:.||||||||.:||..:|:.|
BPUM_0870___y 144 SVKQLEMEQAG-KHEGRLVKVKGYVETKPAQPAGGGYNVVIIDKKYHSTT 192
BSNT_01585___ 301 LRVMNETGVIDELDEGKWYDFTGVLSRYQTFQLLPRKSADLKLLEEQPAP 350
||||.:|.|||::..||||:||||||||.|.|:|||...|:.||:.||.|
BPUM_0870___y 193 LRVMVDTNVIDKVKTGKWYEFTGVLSRYDTLQVLPRHQDDINLLKRQPKP 242
BSNT_01585___ 351 PSAEGEYEGIVDRVVDGDTIHLKSPVLGTTKIRFVNVDTPETYHTPKNDA 400
|..:.||:..|||||||||||||.|||||||:||||:|||||||.||::.
BPUM_0870___y 243 PKMKKEYKATVDRVVDGDTIHLKKPVLGTTKVRFVNMDTPETYHQPKSEL 292
BSNT_01585___ 401 DENQLRFGKKASDYLKTVLSPGDKITVKVGSEAKDSYGRLLGQVLTESGS 450
|:||||||::|:|||||:||.||::|:|:|.||||.|||||.||.|:.|.
BPUM_0870___y 293 DKNQLRFGQQATDYLKTLLSSGDQVTLKIGPEAKDHYGRLLAQVKTKKGL 342
BSNT_01585___ 451 NVNLELVKNGYAPTYFIWPVDNEEDYQQFQAAVAAAKKDQKGIWNENDPL 500
|.||||||.||||||||||:.:|:||..:|.||..||:...|||:|..||
BPUM_0870___y 343 NTNLELVKKGYAPTYFIWPIGDEKDYHTYQKAVKEAKEKGLGIWDEAVPL 392
BSNT_01585___ 501 MEMPFEFRAREQGKGLTRYVGDSSNKTYVQPADWKKIAVENRIFFASASE 550
:|.|||||||||.|||||||||||.||||.|..||:|.|:.||||||..|
BPUM_0870___y 393 LEQPFEFRAREQKKGLTRYVGDSSVKTYVSPDKWKEIDVDKRIFFASKEE 442
BSNT_01585___ 551 AESAGYKKTQTAPQEHVPLRILSMNDLHGKIDQQYELDLDGNGIADGTFG 600
||.|||:..:.|.: |||.|||||||||||||:|||||.|:| ....:|
BPUM_0870___y 443 AEQAGYEPVKDAGE--VPLTILSMNDLHGKIDQEYELDLKGDG-NKAMYG 489
BSNT_01585___ 601 RMDYAAAYLKEKKAEKKNSLIVHAGDMIGGSSPVSSLLQDEPTVELMEDI 650
||||.|||:|:|:|..||::.||||||||||||:||||||||||||||:|
BPUM_0870___y 490 RMDYVAAYMKQKQAAHKNTITVHAGDMIGGSSPISSLLQDEPTVELMENI 539
BSNT_01585___ 651 GFDVGTVGNHEFDEGTDELLRILNGGDHPKGTNGYDGQNFPLVCANCKMK 700
|||||||||||||||.||||||||||||||||.||||||||||||||:.|
BPUM_0870___y 540 GFDVGTVGNHEFDEGVDELLRILNGGDHPKGTKGYDGQNFPLVCANCEYK 589
BSNT_01585___ 701 STGEPFLPAYDIINVEGVPVAFIGVVTQSAAGMVMPEGIKNIEFTDEVTA 750
.||:|.||||:||:|||:|:|||||||:||||||||||||:|:|||||.|
BPUM_0870___y 590 DTGKPLLPAYEIIDVEGIPIAFIGVVTKSAAGMVMPEGIKDIQFTDEVKA 639
BSNT_01585___ 751 VNEAANELKKKGVKAIAVLAHMSAEQNTNAITGESADLANKTDSEIDVIF 800
||||..|||:||:|||||||||:|.||.:.||||||.||.:.|.||||||
BPUM_0870___y 640 VNEATKELKQKGIKAIAVLAHMTASQNGDTITGESAKLAKEGDEEIDVIF 689
BSNT_01585___ 801 AAHNHQVVNGEVNGKLIVQAFEYGKAIGVVDVEIDKTTKDIVKKSAEIVY 850
|.|||:||||||||||||||||||||||.|:|.:|:.|||||||||.|.|
BPUM_0870___y 690 AGHNHEVVNGEVNGKLIVQAFEYGKAIGEVNVTLDRKTKDIVKKSANIQY 739
BSNT_01585___ 851 VDQSKIEPDVSASAILKKYETIAEPIISEVVGEAAVDMEGGYSNDGDTPL 900
|||:.||.|..|:.||..|....|||||||||||.|.|||||||||||||
BPUM_0870___y 740 VDQAGIEKDKEAADILAHYGKEVEPIISEVVGEAGVKMEGGYSNDGDTPL 789
BSNT_01585___ 901 GNLIADGMRAAMKTDFALMNGGGIREALKKGPITWGDLYNIQPFGNVLTK 950
|||||||||.:||:|||:|||||||:.|:||||.||||:|||||||||.|
BPUM_0870___y 790 GNLIADGMRYSMKSDFAMMNGGGIRQNLEKGPIKWGDLFNIQPFGNVLVK 839
BSNT_01585___ 951 LEIKGKDLREIINAQISPVFGPDYSISGFTYTWDKETGKAVDLKMADGTE 1000
||||||||.|||.|||||.||||||||||:|::|..|.|.||||:.||:.
BPUM_0870___y 840 LEIKGKDLVEIIEAQISPQFGPDYSISGFSYSYDPVTYKVVDLKLPDGSA 889
BSNT_01585___ 1001 IQPDATYTLTVNNFMATATGAKYQPIGLLGKNPVTGPEDLEATVEYVKSF 1050
:..|.|||||||||||||||:||.|||.||:||.||||||||||::||||
BPUM_0870___y 890 LALDQTYTLTVNNFMATATGSKYAPIGRLGQNPETGPEDLEATVDFVKSF 939
BSNT_01585___ 1051 D-EPIAYTKEGRIKLAE-----ASDIEDPVTEDPITEKPGDDPVTEDPIK 1094
: ..|.|.|||||:.|: ||
BPUM_0870___y 940 EGASIVYQKEGRIQKAKQEEKAAS-------------------------- 963
BSNT_01585___ 1095 EDPRPGEDLPDIKETPGTAPVHQLPPSAISRFNEIPINNTKTADTANSIS 1144
BPUM_0870___y 963 -------------------------------------------------- 963
BSNT_01585___ 1145 TLPLQTETAESGSDHQLPDTSAGYYNFMVIGAAVTLSGTYLYVRRKRSAS 1194
BPUM_0870___y 963 -------------------------------------------------- 963
BSNT_01585___ 1195 RT 1196
BPUM_0870___y 963 -- 963
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