Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01439 and BPUM_0816

See DNA alignment / Visit BSNT_01439 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:01
# Commandline: needle
#    -asequence pep-align/BSNT_01439.1.24716.seq
#    -bsequence pep-align/BPUM_0816.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01439-BPUM_0816.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01439-BPUM_0816.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01439
# 2: BPUM_0816
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 103
# Identity:      37/103 (35.9%)
# Similarity:    57/103 (55.3%)
# Gaps:          17/103 (16.5%)
# Score: 183.0
# 
#
#=======================================

BSNT_01439         1 MIKGGNVYTFIRLKEEPMTEFEKLVSEQMKTMDKLLDLQSELDRCKQIEA     50
                                      |::|::||.|||:.||:||::|.|||.|.:.|.
BPUM_0816          1 -----------------MSDFDQLVKEQMQLMDQLLNVQGELDLCLETEK     33

BSNT_01439        51 ELRHLERDARLRGIQAEIAVKRKHLADIQDMFQKQTEQVIRSYRSSEKPS    100
                     :|...|:.|....:..:|..||:.|..:|.:|.||||:||.||:..||.|
BPUM_0816         34 QLLQDEKKAEWTKLHDQIKEKREELQKVQTLFTKQTEEVINSYKQMEKSS     83

BSNT_01439       101 SFV    103
                     :.:
BPUM_0816         84 TVM     86


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.