Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02893 and BPUM_0666

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence pep-align/BSNT_02893.1.24716.seq
#    -bsequence pep-align/BPUM_0666.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02893-BPUM_0666.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02893-BPUM_0666.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02893
# 2: BPUM_0666
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 230
# Identity:      48/230 (20.9%)
# Similarity:    92/230 (40.0%)
# Gaps:          76/230 (33.0%)
# Score: 208.5
# 
#
#=======================================

BSNT_02893         0 --------------------------------------------------      0
                                                                       
BPUM_0666          1 MSDQINIFLKSHFPDLVLTPPLFYEWPFGLRFEVADWSLGEKSVVLEKAG     50

BSNT_02893         1 -MNLKRFRFVYEQISTIFNQLFEQNDDIFLVTNMYKHKTNDKFIKKLKVY     49
                      ..||..|:.           |:..|||..||::|....::...:||.||
BPUM_0666         51 DRALKIVRYA-----------FDPEDDILFVTDVYTQHEHELMKQKLLVY     89

BSNT_02893        50 QPFLKCKNYLNQIQVKTYSY-PFEIDEAEEYEMQQFSLLCKPRDLHVAEL     98
                     |.::: :....:::.:..:| ..|:|  |...:::|:|.|:.:|:.:..|
BPUM_0666         90 QKYVR-RQVRKRLRHELLTYVRSELD--EPLTLERFTLTCQLQDIRLRPL    136

BSNT_02893        99 LKAASNEDFPLKPRFGGYSIDYPDVFFVNITKDIIFFIYDDRGCEVIALD    148
                     |.|...|||....:.....:.| :::.:|::|.:||.:||||||::||.|
BPUM_0666        137 LHAICQEDFYAPNQILNGKLGY-EIYLINLSKQMIFHLYDDRGCDLIAAD    185

BSNT_02893       149 FKRIRPLNEKYHNWVEEYKYI---------    169
                     .:|::|:.|...:|:.:|...         
BPUM_0666        186 AERLQPVYEGLQHWLLDYDRPQIDQLFTEK    215


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