Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03884 and BPUM_0483
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence pep-align/BSNT_03884.1.24716.seq
# -bsequence pep-align/BPUM_0483.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03884-BPUM_0483.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03884-BPUM_0483.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03884
# 2: BPUM_0483
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 218
# Identity: 39/218 (17.9%)
# Similarity: 62/218 (28.4%)
# Gaps: 114/218 (52.3%)
# Score: 166.0
#
#
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BSNT_03884 1 -----------------MYQCFFIDKQGQMNEAKWQSSFMDLLVKREKKD 33
:.:..|.| .||.|||.::..|.
BPUM_0483 1 MVHFRLAREDELPQVADLLEDSFRD-----------YSFFDLLCEKVSKR 39
BSNT_03884 34 HSFIFEMHKVLTRAYFKKHFFFVDIQNGEMVVAALLKHRDKPDINLIDYI 83
.:|..|:|.|.|:.||:.....|.::||.:|.||||||...|:..|:||:
BPUM_0483 40 STFARELHLVNTKVYFQHQICLVGVENGHIVSAALLKHPRFPEPGLMDYV 89
BSNT_03884 84 AAGGITLIKMGGFSVL-NMLAVTNETEKSSKSL----------------- 115
.:||:.|:..||.|.: ::..:..|.:|:..||
BPUM_0483 90 LSGGLKLLFTGGISAIQHVFRMLKEAKKACSSLNKPFWYLEALAVAKNQQ 139
BSNT_03884 115 -------------------------------------------------- 115
BPUM_0483 140 GKKLGSRMLKQCLFPFIARQGGGLFTLITHNEANRHFYRKNGWVEFDERV 189
BSNT_03884 115 ------------------ 115
BPUM_0483 190 LRGKEMSLQSWSYKTVIQ 207
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