Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06290 and RBAM_038130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:44
# Commandline: needle
# -asequence dna-align/BSNT_06290___jag.1.9828.seq
# -bsequence dna-align/RBAM_038130___jag.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06290___jag-RBAM_038130___jag.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06290___jag-RBAM_038130___jag.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06290___jag
# 2: RBAM_038130___jag
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 442/671 (65.9%)
# Similarity: 442/671 (65.9%)
# Gaps: 73/671 (10.9%)
# Score: 1418.0
#
#
#=======================================
BSNT_06290___ 1 GTGAGGAATGTGACTGCTGCAGGGCGAAATGTCGATGAAGCAGTACAGTC 50
||||.|||.|||||||||.|.||.||.||||||||.||||||||.||.||
RBAM_038130__ 1 GTGAAGAAGGTGACTGCTACGGGACGGAATGTCGAAGAAGCAGTTCAATC 50
BSNT_06290___ 51 CGGATTGCAAGAGCTGGGATTAACGAAGGATAAGGTAGAAATTATTATTA 100
.||..|.||.||.||...|.|.|||||.|||.|.||||||||.|...|..
RBAM_038130__ 51 AGGCCTTCAGGAACTTCAACTGACGAAAGATCAAGTAGAAATAACGGTGG 100
BSNT_06290___ 101 TTGAAGAGGGAAACAAAGGGTTTCTCGGCATTTTCGGCAAAAAGCCTGCG 150
|..||||.|.|.|||||||||||.|.||.||||||||.||||.|..||||
RBAM_038130__ 101 TGCAAGAAGAATACAAAGGGTTTTTGGGTATTTTCGGAAAAAGGAATGCG 150
BSNT_06290___ 151 ATCGTAAAGCTGGTTGAAAAGATTGATCCGATTCAGCAAGCGAAGTTATA 200
||||||.|.||||..||.||.|...||||..||||..|||||||....||
RBAM_038130__ 151 ATCGTAGAACTGGAAGAGAAAAAAAATCCTGTTCATGAAGCGAAAGCGTA 200
BSNT_06290___ 201 TCTTCAAACGATCGCCGAAGCCATTGCCGGGAAGTCTGATGTGACTGTT- 249
|.|..||...|||..|.|..||||||||||....|||.| ||.||||
RBAM_038130__ 201 TTTGGAAGAAATCATCCATTCCATTGCCGGACCTTCTAA---GATTGTTA 247
BSNT_06290___ 250 --CAAGAAAGCAAAAAGACAGTGAGATATCATATAACAGGTGAAAAGGCA 297
.||||||.|||.||.|||||..|.|.|||.||.|.|||||||||.||.
RBAM_038130__ 248 CGGAAGAAAACAAGAAAACAGTCTGTTTTCACATTAAAGGTGAAAAAGCG 297
BSNT_06290___ 298 GCATTGTTGATTGGGAAAAGAGGACAAACCTTAAACGCTCTTGAAACTTT 347
||..||.|.|||||.||||||||||||||..|.||.||.||.|||||.||
RBAM_038130__ 298 GCGCTGCTTATTGGCAAAAGAGGACAAACACTCAATGCCCTGGAAACATT 347
BSNT_06290___ 348 GACACAGCTTGCCCTTAACCGTTATC----CAGGCCAATA----CAAAAA 389
|||.|||||||...|.||||| | |.|||||.|| |||
RBAM_038130__ 348 GACGCAGCTTGTTTTGAACCG----CGGCTCCGGCCAGTATCGCCAA--- 390
BSNT_06290___ 390 TGTGACG--GTGGATGCAGAAAACTATCGTTTGAAAAGAAAAGAAACACT 437
|.|| ||.||.||.||.||.|||||...||||||||.|||||..||
RBAM_038130__ 391 ---GCCGTTGTCGACGCTGAGAATTATCGGCGGAAAAGAAGAGAAATTCT 437
BSNT_06290___ 438 -GAGCCAGCTGGCCATCAAGCTTGCTGACCAAGTTTTGAAAACGAAAAAA 486
||| ||||||||.|.||.|||.||..|.|||||.|.|||||||||||||
RBAM_038130__ 438 GGAG-CAGCTGGCAAACAGGCTGGCCAAGCAAGTGTCGAAAACGAAAAAA 486
BSNT_06290___ 487 ----TCCATCCAGCTT-GAGCCTATGCCGTCCAGCGAAAGAAAAATTATT 531
|.||| || ||.||.||||||||..|.|||||||||||.||.
RBAM_038130__ 487 GATGTGCAT-----TTAGAACCGATGCCGTCAGGTGAAAGAAAAATCATC 531
BSNT_06290___ 532 CACGATACTCTTTCTGGATATGCAAACCACC---AGATCAAAACATATTC 578
||.||..|.||.| ||||.||.| |.||||||||.|.|||
RBAM_038130__ 532 CATGACGCGCTGT---------CAAAGCATCCAAATATCAAAACGTTTTC 572
BSNT_06290___ 579 AATGGGTGAAGGCGAAAATCGTCATCTCGTTATTTCCCATAAAAGATAG- 627
.|..|||||||||....|.||.||.||||||||||||||| ||||||||
RBAM_038130__ 573 TACCGGTGAAGGCCGGTACCGCCACCTCGTTATTTCCCAT-AAAGATAGC 621
BSNT_06290___ 627 --------------------- 627
RBAM_038130__ 622 AGAAAACCGAAGTCCGGGTAA 642
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