Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06287 and RBAM_038110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:44
# Commandline: needle
# -asequence dna-align/BSNT_06287___gidA.1.9828.seq
# -bsequence dna-align/RBAM_038110___gidA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06287___gidA-RBAM_038110___gidA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06287___gidA-RBAM_038110___gidA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06287___gidA
# 2: RBAM_038110___gidA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1888
# Identity: 1592/1888 (84.3%)
# Similarity: 1592/1888 (84.3%)
# Gaps: 2/1888 ( 0.1%)
# Score: 6764.0
#
#
#=======================================
BSNT_06287___ 1 ATGGGGTATGAAGCAGGCCAATACGATGTGATTGTGATTGGCGCCGGGCA 50
||||||||||||||||||||||||||.||||||||.||.|||||||||||
RBAM_038110__ 1 ATGGGGTATGAAGCAGGCCAATACGACGTGATTGTCATCGGCGCCGGGCA 50
BSNT_06287___ 51 TGCCGGTGTTGAGGCTGCCCTCGCATCTGCACGCCAAGGCGCCAAAACGC 100
|||||||||||||||||||||||||||.||.|||||.||.||||||||||
RBAM_038110__ 51 TGCCGGTGTTGAGGCTGCCCTCGCATCCGCGCGCCAGGGAGCCAAAACGC 100
BSNT_06287___ 101 TTGTCTTGACCATCAACCTAGATATGGTTGCATTTATGCCATGTAATCCG 150
||||.|||||.|||||.||.|||||||||||.||||||||||||||||||
RBAM_038110__ 101 TTGTTTTGACGATCAATCTTGATATGGTTGCGTTTATGCCATGTAATCCG 150
BSNT_06287___ 151 TCTGTCGGCGGCCCCGCAAAAGGGATTGTCGTCCGCGAAATTGACGCGCT 200
|||||||||||||||||.||||||||||||||||||||||||||.|||||
RBAM_038110__ 151 TCTGTCGGCGGCCCCGCGAAAGGGATTGTCGTCCGCGAAATTGATGCGCT 200
BSNT_06287___ 201 CGGCGGAGAAATGGGAAGAAACATCGATAAAACGCATATTCAAATGAGAA 250
||||||||||||||..|||||.||.||||||||.||||||||||||||||
RBAM_038110__ 201 CGGCGGAGAAATGGCTAGAAATATAGATAAAACTCATATTCAAATGAGAA 250
BSNT_06287___ 251 TGCTGAATACAGGAAAAGGTCCTGCGGTTCGTGCATTGCGTGCGCAAGCA 300
||||||||||||||||||||||.||.||.||.||..||||||||||.||.
RBAM_038110__ 251 TGCTGAATACAGGAAAAGGTCCGGCCGTACGGGCGCTGCGTGCGCAGGCG 300
BSNT_06287___ 301 GACAAATTCCAATATCAGCACGAAATGAAAAATACGCTTGAAAAAGAACC 350
||.||||||||||||||||||||||||||..|||||||.||||||..|||
RBAM_038110__ 301 GATAAATTCCAATATCAGCACGAAATGAAGCATACGCTGGAAAAAACACC 350
BSNT_06287___ 351 AAACTTAACATTGCTGCAAGGAATTGTGGAGCGGCTGATCGTTGAAGACG 400
.||.||.|||.|.||.|||||.||||..|||||..|.|||.|||||||||
RBAM_038110__ 351 GAATTTGACACTTCTTCAAGGGATTGCCGAGCGTTTAATCATTGAAGACG 400
BSNT_06287___ 401 GCGAATGCCGAGGCGTTATTACACAAACCGGCGCACATTATCGTGCGAAA 450
|.||.|||||.||.||.|||||.||||||||.||..|.|||...||.|||
RBAM_038110__ 401 GGGAGTGCCGCGGTGTCATTACGCAAACCGGTGCTGAATATAAGGCAAAA 450
BSNT_06287___ 451 GCAGTTGTCATGACGACAGGGACATATTTAAGAGGACGTATCATTCTTGG 500
.|.||.||..||||.||.||.||.|||||||||||.||.||||||||.||
RBAM_038110__ 451 ACGGTCGTGCTGACAACCGGAACGTATTTAAGAGGGCGGATCATTCTCGG 500
BSNT_06287___ 501 TGATCTGTCTTACTCAAGCGGCCCAAATAACCAGCAGCCTTCTATTAAGC 550
||||.||||||||||||||||.||.||||||||||||||.||||||||.|
RBAM_038110__ 501 TGATTTGTCTTACTCAAGCGGTCCGAATAACCAGCAGCCGTCTATTAAAC 550
BSNT_06287___ 551 TTTCTGAGCATTTGGAGGAACTTGGTTTTGACCTTGTTCGTTTTAAAACA 600
||||||||||.||.|||||.||.||||||||.||.||.|||||||||||.
RBAM_038110__ 551 TTTCTGAGCACTTAGAGGAGCTCGGTTTTGATCTCGTCCGTTTTAAAACG 600
BSNT_06287___ 601 GGTACGCCGCCTCGCGTTAAAAGCGACACGATTGATTACAGCAAAACGGA 650
||.|||||.|||||.||...||||||..|.|||||||||||||||||.||
RBAM_038110__ 601 GGCACGCCTCCTCGTGTCTCAAGCGATTCCATTGATTACAGCAAAACAGA 650
BSNT_06287___ 651 AATTCAGCCTGGTGACGATGTGCCTCGCGCTTTCTCATATGAAACAGTGG 700
|||.|||||.||.|||...||.||.||||||||||||||||||||.||.|
RBAM_038110__ 651 AATCCAGCCGGGGGACCCGGTTCCGCGCGCTTTCTCATATGAAACGGTTG 700
BSNT_06287___ 701 AATATATCACAGATCAGCTCCCTTGCTGGCTGACATATACAAGCCCTGAG 750
||||.||.||.||||||||.||||||||||||||.||.||.||.||||||
RBAM_038110__ 701 AATACATTACCGATCAGCTGCCTTGCTGGCTGACTTACACGAGTCCTGAG 750
BSNT_06287___ 751 ACACATGAGATTATTGACAGCAACCTGCACCGTTCACCGATGTATTCCGG 800
||.||||||||.||.||||||||||||||.|||||.||.|||||||||||
RBAM_038110__ 751 ACTCATGAGATCATCGACAGCAACCTGCATCGTTCGCCAATGTATTCCGG 800
BSNT_06287___ 801 TATGATCAAAGGTACGGGCCCAAGATACTGCCCATCCATTGAAGATAAAG 850
||||||.|||||.|||||.||.|||||||||||.||.|||||||||||||
RBAM_038110__ 801 TATGATTAAAGGAACGGGACCGAGATACTGCCCTTCGATTGAAGATAAAG 850
BSNT_06287___ 851 TTGTACGATTTAATGATAAACCGCGTCACCAGATCTTCCTTGAGCCGGAA 900
|.||.||.||||||||||||||||||||.|||||.|||||||||||||||
RBAM_038110__ 851 TCGTTCGGTTTAATGATAAACCGCGTCATCAGATTTTCCTTGAGCCGGAA 900
BSNT_06287___ 901 GGCAGAAATACACAGGAAGTCTATGTCCAAGGTTTATCTACAAGTCTTCC 950
|||||||||||.||||||||.||.||.|||||||||||.||.||||||||
RBAM_038110__ 901 GGCAGAAATACGCAGGAAGTATACGTTCAAGGTTTATCCACGAGTCTTCC 950
BSNT_06287___ 951 AGAAGACGTACAGCAAAGAATGCTTGCAACGATTCCTGGACTTGAAAACG 1000
.||.|||||.|||||..|.|||||.||.||.|||||.|||||.|||||.|
RBAM_038110__ 951 TGAGGACGTGCAGCAGCGGATGCTGGCGACCATTCCGGGACTGGAAAAGG 1000
BSNT_06287___ 1001 TGCAAATGATGAGAGCCGGCTATGCGATCGAGTATGATGCAATCGTACCG 1050
||||.||||||||||||||.||.|||||.||||||||.||.||.||||||
RBAM_038110__ 1001 TGCAGATGATGAGAGCCGGATACGCGATTGAGTATGACGCGATTGTACCG 1050
BSNT_06287___ 1051 ACACAGCTCTGGCCGACACTTGAAACAAAAAAAATCACAAACCTTTACAC 1100
||.|||||||||||.|||||.||.||.|||||||||.|.|||||.|||||
RBAM_038110__ 1051 ACGCAGCTCTGGCCTACACTGGAGACGAAAAAAATCCCTAACCTGTACAC 1100
BSNT_06287___ 1101 TGCAGGCCAAATTAACGGAACTTCCGGTTATGAAGAAGCTGCGGGACAAG 1150
.||.||.|||||||||||.||.||.||||||||.|||||.||.||.||||
RBAM_038110__ 1101 AGCCGGTCAAATTAACGGTACATCAGGTTATGAGGAAGCAGCCGGGCAAG 1150
BSNT_06287___ 1151 GGATTATGGCGGGAATCAATGCAGGACGAAAAGCGCTTGGAAAAGAAGAA 1200
|.||||||||.||.|||||.|||||.||.|||||||||||||||||||||
RBAM_038110__ 1151 GAATTATGGCAGGGATCAACGCAGGCCGCAAAGCGCTTGGAAAAGAAGAA 1200
BSNT_06287___ 1201 GTGATTTTAAGCCGTTCTGACGCCTATATTGGTGTTCTGATTGATGACCT 1250
|||||..|.||||||||.||.||.|||||.|||||..||||||||||..|
RBAM_038110__ 1201 GTGATCCTCAGCCGTTCCGATGCTTATATCGGTGTATTGATTGATGATTT 1250
BSNT_06287___ 1251 TGTGACAAAAGGTACCAATGAGCCATATCGTCTTTTGACATCACGTGCGG 1300
.||.||.|||||.||||||||.||.||.|||||..||||.|||||.||||
RBAM_038110__ 1251 GGTAACGAAAGGAACCAATGAACCGTACCGTCTGCTGACTTCACGGGCGG 1300
BSNT_06287___ 1301 AATACAGATTGCTGCTTCGCCATGACAATGCTGATTTGCGTCTGACAGAA 1350
||||||||.|||||||.||.||.|||||.||.|||.|.||||||||.|||
RBAM_038110__ 1301 AATACAGACTGCTGCTCCGTCACGACAACGCGGATCTTCGTCTGACGGAA 1350
BSNT_06287___ 1351 ATCGGACACCGCATTGGATTGATTTCTGATGAGCGCTATGCGGCTTTTGA 1400
|||||.|||...||.||.||.|||||||||||||||||||..||.|||||
RBAM_038110__ 1351 ATCGGCCACGATATCGGCTTAATTTCTGATGAGCGCTATGAAGCGTTTGA 1400
BSNT_06287___ 1401 GAAGAAAAAAGCGGCGATCGAGGCGGAGAAAAAACGTCTTCATTCTGTAA 1450
||||||||||||||||||||||||.||||||||||||||....|||||.|
RBAM_038110__ 1401 GAAGAAAAAAGCGGCGATCGAGGCAGAGAAAAAACGTCTCTGGTCTGTTA 1450
BSNT_06287___ 1451 TTATCAAGCCGTCTCCGGAAAATCAAGAATATATCCGTTCTCTTGGCGGA 1500
||||||||||||||||.||.|||||.||||||||||||||.||.||||||
RBAM_038110__ 1451 TTATCAAGCCGTCTCCTGAGAATCAGGAATATATCCGTTCACTCGGCGGA 1500
BSNT_06287___ 1501 AGCGAATTGAAAGATGGAGTTCGCGGCACAGACTTGATGAAGCGTCCTGA 1550
|||||..|||||||.|||||.|||||||||||.||.|||||.|||||.||
RBAM_038110__ 1501 AGCGAGCTGAAAGACGGAGTGCGCGGCACAGATTTAATGAAACGTCCGGA 1550
BSNT_06287___ 1551 AATGAACTATGAAACAGTCACAAAACTGGCGCCGCCAGAAGTGCCAGTTC 1600
||||||||||||||||||.||||||||.|||||..||||....||.||||
RBAM_038110__ 1551 AATGAACTATGAAACAGTGACAAAACTTGCGCCTGCAGATTCTCCGGTTC 1600
BSNT_06287___ 1601 CTCAAGACGTGGCAGAACAAGTAGAAATCCAAGTGAAATATGAAGGATAT 1650
|.|||||.|||||.||||||||.|||||.||.||||||||||||||||||
RBAM_038110__ 1601 CGCAAGATGTGGCGGAACAAGTGGAAATTCAGGTGAAATATGAAGGATAT 1650
BSNT_06287___ 1651 ATTGAAAAATCTCTT-CAGCAAGTGGAAAAACTGAAGAAGATGGAAAATA 1699
||.|||||||| ||| ||||||||||||||.||||||||.||||||||.|
RBAM_038110__ 1651 ATCGAAAAATC-CTTGCAGCAAGTGGAAAAGCTGAAGAAAATGGAAAACA 1699
BSNT_06287___ 1700 AAAAAATTCCAGATCGAATTGATTATGACGCAATTAAGGGGATTGCGACC 1749
|||||||.||.|||||.||||||||||||||.|||||.||.|||||.||.
RBAM_038110__ 1700 AAAAAATCCCTGATCGGATTGATTATGACGCCATTAAAGGAATTGCTACT 1749
BSNT_06287___ 1750 GAGGCGCGTCAAAAACTGAAAAATGTACGGCCTTTGTCTGTTGCCCAAGC 1799
||.||.||||||||.||||||.|.||.||.|||||.||.|||||.|||||
RBAM_038110__ 1750 GAAGCCCGTCAAAAGCTGAAAGAAGTGCGTCCTTTATCAGTTGCTCAAGC 1799
BSNT_06287___ 1800 TTCCCGCATTTCCGGTGTAAACCCGGCGGACATTTCAATTCTATTGGTGT 1849
.|||||.||||||||.||.||.|||||.|||||||||||.||..||||.|
RBAM_038110__ 1800 GTCCCGTATTTCCGGCGTCAATCCGGCAGACATTTCAATCCTGCTGGTAT 1849
BSNT_06287___ 1850 ATTTAGAGCAGGGACGCATTGCGAAGATAGCCGAATAG 1887
|..|.||||||||.||.|||||.|||.||||.||||||
RBAM_038110__ 1850 ACCTGGAGCAGGGCCGTATTGCCAAGGTAGCTGAATAG 1887
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