Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06265 and RBAM_037940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:42
# Commandline: needle
# -asequence dna-align/BSNT_06265.1.9828.seq
# -bsequence dna-align/RBAM_037940___ccpB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06265-RBAM_037940___ccpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06265-RBAM_037940___ccpB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06265
# 2: RBAM_037940___ccpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 948
# Identity: 339/948 (35.8%)
# Similarity: 339/948 (35.8%)
# Gaps: 513/948 (54.1%)
# Score: 1140.0
#
#
#=======================================
BSNT_06265 1 ATGGCAAATATAAAAGAGATCGCAAGACTGGCAAATGTATCTGTTTCGAC 50
||||||||||||||||||||.||.|.||||||.|||||.||.||..|.||
RBAM_037940__ 1 ATGGCAAATATAAAAGAGATTGCGAAACTGGCGAATGTGTCGGTGGCCAC 50
BSNT_06265 51 TGTCTCGCGTGTATTGAATCATCATCCGTATGTGTCTGA--AGAAAAGAG 98
.||.||.||.|||||.||.|..||.|||||.||.||||| |||||||
RBAM_037940__ 51 CGTATCACGCGTATTAAACCGACACCCGTACGTATCTGAGGAGAAAAG-- 98
BSNT_06265 99 AAAG---CTTGTTCAACAAGTCATGAAGGATTTGGATTATACACCAAATC 145
| |||||..|.|||||.||||||||..||||||||||.||.||||
RBAM_037940__ 99 ---GCGTCTTGTGAATCAAGTGATGAAGGAGCTGGATTATACCCCTAATC 145
BSNT_06265 146 GAACCGCAATCGATCTCATTCGCGGGAAAACCCATACGGTCGGTGTGATT 195
|||||||.||.|||||.||||||||.||.|||.||||..||||.||||||
RBAM_037940__ 146 GAACCGCCATTGATCTGATTCGCGGAAAGACCAATACAATCGGCGTGATT 195
BSNT_06265 196 CTGCCTTATAGCGATCATCCCTGCTTTGATAAAATCGTTAACGGAATCAC 245
.||||.||.|||||.||||||||||||||.|||||.||.|||||.|||||
RBAM_037940__ 196 TTGCCGTACAGCGACCATCCCTGCTTTGACAAAATTGTAAACGGTATCAC 245
BSNT_06265 246 CAAGGCGGCTTTTCAAAATGAGTATGCAACGACCCTCCTCCCCACCAATT 295
.||||..||.|||....||||.||.|..||.|||||.|||||||||||.|
RBAM_037940__ 246 GAAGGAAGCGTTTGCCCATGATTACGTGACAACCCTTCTCCCCACCAACT 295
BSNT_06265 296 ATAACCCCGCTATTGAAATCAAATATTTAGAGCTGTTAAGAATGAAGAAA 345
||.||||||||||.||.||.|..|||||.||.|||.|.|.||||||.||.
RBAM_037940__ 296 ATGACCCCGCTATAGAGATGACCTATTTCGAACTGCTGAAAATGAAAAAG 345
BSNT_06265 346 ATAGACGGTCTTATCATTACATC-----------------------CCGT 372
||.|||||.||.||..|.||.|| ||||
RBAM_037940__ 346 ATTGACGGACTGATTGTCACGTCCCGCGCGAATGAATGGGAGACCGCCGT 395
BSNT_06265 373 GCCCAACTTGGGGAAAGCTC------TCG-------AAAT---CA-CATA 405
|||..||.|||...|.|.|| ||| |.|| || |||.
RBAM_037940__ 396 GCCTTACCTGGAATACGGTCCCATTGTCGCTTGTGAATATACACAGCATC 445
BSNT_06265 406 AAGCAGA---------CTT-TCATGA---------AGCATTGTACAG--- 433
||| ||| ||| |.|||| |||| |||||
RBAM_037940__ 446 AAG-AGATTCCCTGCGCTTATAATGACAGGCAGGCAGCA---TACAGAGA 491
BSNT_06265 434 CTGCTTACTGA--------------------------------------- 444
..||||..||.
RBAM_037940__ 492 AAGCTTTTTGTATTTGAAAAACCGCGGACATCAAGACGTTGCTTTTACAT 541
BSNT_06265 444 -------------------------------------------------- 444
RBAM_037940__ 542 GTGTGCGGGAAGCGGAAAAAAGCCCGAGTACGGCCGACAAGGTAACCGCA 591
BSNT_06265 444 -------------------------------------------------- 444
RBAM_037940__ 592 TATAAGGCGGTTTTCGGCTCTCTTGATGAAACCCGCATTCTGGTCGGATG 641
BSNT_06265 444 -------------------------------------------------- 444
RBAM_037940__ 642 CCATGATATGGACGACGGAAAGCGAGCGGGTGAGCACTTCTGGGGTTTCG 691
BSNT_06265 444 -------------------------------------------------- 444
RBAM_037940__ 692 ACAAGGCGCCGACGGCCATCTATGCGCACAGTGATGACGTGGCTGCCGGC 741
BSNT_06265 444 -------------------------------------------------- 444
RBAM_037940__ 742 TTGTACCAGTTTGCGAAAGAACAGAAATGGGACGCGGAGATCATCGGCGA 791
BSNT_06265 444 -------------------------------------------------- 444
RBAM_037940__ 792 GGGAAATCTGAGCGTCAGCCGGGCATTGAATATTCCATCCCTGGAACTTC 841
BSNT_06265 444 -------------------------------------------------- 444
RBAM_037940__ 842 ATTTGGAACGGGTCGGTAAGGAAGCATTTTTATTGTTTTTTCACGAAGAA 891
BSNT_06265 444 ------------------------------------------------ 444
RBAM_037940__ 892 ACGGCTAAAAAACAAATTATGCATCAATTTCAGCGGAAAAAGTCTTGA 939
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