Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00978 and RBAM_037760

See Amino acid alignment / Visit BSNT_00978 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence dna-align/BSNT_00978___ydgI.1.9828.seq
#    -bsequence dna-align/RBAM_037760___ydgI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00978___ydgI-RBAM_037760___ydgI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00978___ydgI-RBAM_037760___ydgI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00978___ydgI
# 2: RBAM_037760___ydgI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 639
# Identity:     539/639 (84.4%)
# Similarity:   539/639 (84.4%)
# Gaps:           9/639 ( 1.4%)
# Score: 2317.0
# 
#
#=======================================

BSNT_00978___      1 ATGA---------TCAAAACAAACGATTTTATGGAAATTATGAAAGGCCG     41
                     ||||         |.|||||||||||.||||||||.||||||||||||||
RBAM_037760__      1 ATGAAAACAGAACTGAAAACAAACGACTTTATGGACATTATGAAAGGCCG     50

BSNT_00978___     42 CCGTTCTATCCGCAACTATGATCCGGCAGTAAAAATCAGCAAAGAAGAAA     91
                     ||||||.||.||.||.||.||||||||.||.|||||||||||||||||||
RBAM_037760__     51 CCGTTCCATTCGGAATTACGATCCGGCTGTTAAAATCAGCAAAGAAGAAA    100

BSNT_00978___     92 TGACAGAGATCTTAGAGGAAGCAACAACTGCCCCATCTTCTGTTAACGCG    141
                     ||||..|.|||.|.||.||||||||.||.||.||.|||||.||.||||||
RBAM_037760__    101 TGACTCAAATCCTGGAAGAAGCAACGACAGCGCCGTCTTCAGTCAACGCG    150

BSNT_00978___    142 CAGCCATGGCGTTTTCTTGTCATTGACAGCCCGGAAGGAAAAGAAAAGCT    191
                     |||||.|||||||||||.||||||||||||||.||||||||||||||.||
RBAM_037760__    151 CAGCCGTGGCGTTTTCTCGTCATTGACAGCCCTGAAGGAAAAGAAAAACT    200

BSNT_00978___    192 CGCACCGCTTGCAAGCTTTAACCAAACACAGGTCACAACATCATCTGCTG    241
                     |||.||||||||.|||||||||||||||||.||||..|||||||||||.|
RBAM_037760__    201 CGCGCCGCTTGCCAGCTTTAACCAAACACAAGTCAGCACATCATCTGCGG    250

BSNT_00978___    242 TCATCGCTGTATTTGCAGACATGAACAATGCAGACTACTTAGAAGAAATC    291
                     |.|||||.||.||.|||||.|||||||.||..|||||.|||||||||||.
RBAM_037760__    251 TGATCGCGGTTTTCGCAGATATGAACAGTGATGACTATTTAGAAGAAATT    300

BSNT_00978___    292 TATTCAAAAGCCGTGGAACTTGGTTACATGCCGCAGGAGGTCAAAGACAG    341
                     |||||||||||.||.|||||.||.||||||||||||||.||.||||||||
RBAM_037760__    301 TATTCAAAAGCGGTCGAACTGGGCTACATGCCGCAGGAAGTAAAAGACAG    350

BSNT_00978___    342 ACAAATCGCCGCGCTGACCGCACATTTTGAAAAGCTTCCGGCACAGGTCA    391
                     |||||||||.|||.||||.||.|||||||||||.||.||||..||.||.|
RBAM_037760__    351 ACAAATCGCTGCGTTGACGGCGCATTTTGAAAAACTGCCGGAGCAAGTGA    400

BSNT_00978___    392 ACCGTGAAACGATCCTGATTGATGGAGGTCTTGTTTCCATGCAGCTGATG    441
                     |||||||||||||.||||||||.|||||.||.||||||||||||||||||
RBAM_037760__    401 ACCGTGAAACGATTCTGATTGACGGAGGACTCGTTTCCATGCAGCTGATG    450

BSNT_00978___    442 CTGACTGCACGCGCGCATGGCTACGATACAAACCCGATCGGCGGATACGA    491
                     ||.||.|||||||||||.|||||.||.|||||||||||||||||.|||||
RBAM_037760__    451 CTTACGGCACGCGCGCACGGCTATGACACAAACCCGATCGGCGGCTACGA    500

BSNT_00978___    492 TAAAGAAAACATCGCGGAAACCTTCGGATTAGATAAAGAACGTTATGTAC    541
                     |||||||||.||.||.||....||||||.|.||||||||.||||||||||
RBAM_037760__    501 TAAAGAAAAGATTGCCGAGGTTTTCGGAATGGATAAAGAGCGTTATGTAC    550

BSNT_00978___    542 CGGTTATGCTACTTTCTATCGGAAAAGCAGCAGACGAAGGCTATGCTTCC    591
                     ||||.|||||..|.||.|||||||||||.|||||||||||.|||||||||
RBAM_037760__    551 CGGTCATGCTGTTATCAATCGGAAAAGCGGCAGACGAAGGATATGCTTCC    600

BSNT_00978___    592 TACCGTCTGCCGATTGATACAATTGCAGAATGGAAATAA    630
                     ||||||||.||.||.||.|||||.|||.|||||||||||
RBAM_037760__    601 TACCGTCTTCCTATCGAAACAATCGCACAATGGAAATAA    639


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.