Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05205 and RBAM_037660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_05205___yveB.1.9828.seq
# -bsequence dna-align/RBAM_037660___yveB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05205___yveB-RBAM_037660___yveB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05205___yveB-RBAM_037660___yveB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05205___yveB
# 2: RBAM_037660___yveB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1582
# Identity: 1172/1582 (74.1%)
# Similarity: 1172/1582 (74.1%)
# Gaps: 68/1582 ( 4.3%)
# Score: 4220.5
#
#
#=======================================
BSNT_05205___ 1 ATGAACTATATAAAAGCAGGCAAATGGCTAACC---GTATTCCTAACCTT 47
||| |||.|.||||||| || |||.|..|.|.|||
RBAM_037660__ 1 ATG------------GCACGAAAATGGC---CCGTTGTAATATTGATCTT 35
BSNT_05205___ 48 TTTAGAAATATTGCTGTTTATCGACTTATTTCC-AAAAGAAG-AACA--- 92
|||.|.....||.||||||.|||.||||.|.|| ||.|.||| .|||
RBAM_037660__ 36 TTTGGGTGCGTTCCTGTTTGTCGGCTTACTGCCGAACAAAAGCCACAATT 85
BSNT_05205___ 93 ----TGAC-CAAAAAATAAAATCAAAACAGAAGCCGGACTACCGGGCGGC 137
|||| ||||.| |..|.||.|||...||.|||||.|||||
RBAM_037660__ 86 CCTCTGACACAAACA-------CGGAGCATAAGAAAGATTACCGTGCGGC 128
BSNT_05205___ 138 ATATCATTTTACGACGCCGGATAAATGGAAAAATGACCCTCAAAAACCGA 187
.||||||||||||||.|||||.|||||||||||.|||||||||||.||.|
RBAM_037660__ 129 GTATCATTTTACGACCCCGGACAAATGGAAAAACGACCCTCAAAAGCCCA 178
BSNT_05205___ 188 TCTATTTTGATGGCAAGTATCATTATTTCTATCTATATAACCGGGATTAC 237
|.|.|||.||.||.||.||||||||.|.||||||.|||||.|||||||||
RBAM_037660__ 179 TTTTTTTCGAGGGGAAATATCATTACTACTATCTTTATAATCGGGATTAC 228
BSNT_05205___ 238 CCAAAAGGCAACGGCACAGAATGGCGCCATGCCGTCTCAGAGGATTTGGT 287
||.||.||||||||.|||||||||||.||.|||||.||||||||.|||||
RBAM_037660__ 229 CCGAACGGCAACGGTACAGAATGGCGGCACGCCGTATCAGAGGACTTGGT 278
BSNT_05205___ 288 GCACTGGACCGATGAAGGCGTGGCGATTCCGAAATATACAAATCCG--GA 335
|||||||||.||.||||||..|||.|||||||||||.||.|| || .|
RBAM_037660__ 279 GCACTGGACGGACGAAGGCACGGCTATTCCGAAATACACCAA--CGAAAA 326
BSNT_05205___ 336 CGGTGACATTTGGACCGGTTCCGTCGTAGTTGATAAAGAGAACACAGCCG 385
|||.||.||.|||.|||||||.|||||..||||||||.|.|||||.||.|
RBAM_037660__ 327 CGGCGATATATGGTCCGGTTCTGTCGTCATTGATAAACACAACACCGCGG 376
BSNT_05205___ 386 GCTTCGGGAAAAATGCGCTTGTCGCGATTGTGACACAGCCCTCAGCCAAA 435
|||||||.|||||.|||||.|||||..|...|||.|||||..||||||||
RBAM_037660__ 377 GCTTCGGCAAAAACGCGCTGGTCGCCGTCACGACGCAGCCGACAGCCAAA 426
BSNT_05205___ 436 GACAAAA-AACAGGAGCAATATTTGTGGTACAGCACAGATAAAGGAAAAT 484
|||||| ..|||||.||||||||.|||||||||||.||.|||||||||.
RBAM_037660__ 427 -ACAAAAGCCCAGGAACAATATTTATGGTACAGCACGGACAAAGGAAAAA 475
BSNT_05205___ 485 CATTCAAATTCTACAGTGGCAACCCCGTTATGCCTAATCCGGGCACAGAC 534
|.||.|..|.|||.||||...|.|||||.|||...||||||||.||..|.
RBAM_037660__ 476 CGTTTACTTCCTATAGTGATCAGCCCGTGATGAAAAATCCGGGAACTAAG 525
BSNT_05205___ 535 GATTTCAGAGATCCGAAAGTCATATGGGATGACCAGGATAACAAATGGGT 584
||||||.|.||.||||||||.||.||||||||.||||||.||||||||||
RBAM_037660__ 526 GATTTCCGGGACCCGAAAGTGATCTGGGATGAACAGGATGACAAATGGGT 575
BSNT_05205___ 585 CATGGTCATGGCTGAAGGATCAAAAATCGGCTTTTATGAAT---CCGATA 631
.||||.||||||.|||||...|||||||||.|||||||||| |||||
RBAM_037660__ 576 GATGGCCATGGCCGAAGGCGAAAAAATCGGTTTTTATGAATCACCCGAT- 624
BSNT_05205___ 632 ATCTT-AAGGACTGGCATTACACAAGCGGATTCTTCCCAGAACAGGCGGG 680
|| ||..|.|||.|.|||||..||||.||..||.|..|.|||...||
RBAM_037660__ 625 ---TTAAAAAATTGGAAATACACGGGCGGTTTTATCACTCAGCAGATCGG 671
BSNT_05205___ 681 AATGGTGGAATGTCCCGACCTCTACATGATGCGGGCAAGCGACGGAACGA 730
..|.||.|||||.||||||||.||.||||||||.|||...||||||||..
RBAM_037660__ 672 CCTCGTCGAATGCCCCGACCTTTATATGATGCGTGCAGATGACGGAACAG 721
BSNT_05205___ 731 ATAAGTGGGTTCTCGGTGCCAGCGCGAATGGCAAACCGTGGGGCAAACCA 780
..|||||||||||.||.||.|||||.||.||||||||....||||||||.
RBAM_037660__ 722 CCAAGTGGGTTCTGGGCGCAAGCGCAAACGGCAAACCCGCAGGCAAACCG 771
BSNT_05205___ 781 AATACGTACGCCTACTGGACCGGAAGCTTCGACGGAAAAGAATTCAAAGC 830
|||||||||||.||.||||||||||.|||.|||||.||.|||||.|..||
RBAM_037660__ 772 AATACGTACGCGTATTGGACCGGAAACTTTGACGGGAAGGAATTTACCGC 821
BSNT_05205___ 831 GGATC-AGACTGAAGCCCAATGGCTTGACTATGGCTTCGACTGGTATGGC 879
.|||| ||| .|||.|.||||||||.||.||.|||||.||||||||.|||
RBAM_037660__ 822 CGATCAAGA-AGAACCGCAATGGCTCGATTACGGCTTTGACTGGTACGGC 870
BSNT_05205___ 880 GGTGTGACGTTCGAAGACAGCAAAAGCACAGATCCATTAGA-AAAGCGGT 928
||.||.||.||.||.|||.|.||.|||..|||||| |..|| |||.||.|
RBAM_037660__ 871 GGCGTCACATTTGAGGACGGTAATAGCGAAGATCC-TCTGACAAAACGCT 919
BSNT_05205___ 929 ATGCGCTTGCCTGGATGAACAATTGGGATTATGCCAACAACACCCCGACA 978
|||||||.||.|||||||||||||||||||||.|.||..|.||.||||||
RBAM_037660__ 920 ATGCGCTGGCATGGATGAACAATTGGGATTATCCGAATGAAACACCGACA 969
BSNT_05205___ 979 ATGAAGAACGGCTTTAACGGCACAGATTCTGTCATACGCAAACTCCGGCT 1028
.|.||.|||||||||||||||||.||||||.||.|.||..||.||||.||
RBAM_037660__ 970 CTAAAAAACGGCTTTAACGGCACGGATTCTATCGTCCGTGAAATCCGCCT 1019
BSNT_05205___ 1029 GAAGGAGCAGGA---TGGAACATACAGCCTCGTCTCACAGCCGATTGAAG 1075
..||.||||||| .||.|||||||||||.||.|||.|||||.||||||
RBAM_037660__ 1020 TCAGCAGCAGGACGGCGGCACATACAGCCTTGTGTCAGAGCCGGTTGAAG 1069
BSNT_05205___ 1076 CTTTGGAGCAGCTGACTGTTTCAACTGACGAAATAGAGGATCAGGATGTG 1125
|.|||.|.||..|.||...||||||||||...|||||..|..|..|.|||
RBAM_037660__ 1070 CATTGAACCAATTAACCTCTTCAACTGACAGCATAGAACACAAACAGGTG 1119
BSNT_05205___ 1126 AACGGATCAAAAACATTGTCGATAACAGGTGATACGTACCAGCTTGATAC 1175
|||||.|||.|.|||.||.||||.|.|||||||||.||.||||||||||.
RBAM_037660__ 1120 AACGGTTCAGAGACACTGCCGATCAAAGGTGATACATATCAGCTTGATAT 1169
BSNT_05205___ 1176 GGATCTTTCTTGGTCAGAGCTAAAGAATGCAGGCGTCAGGCTCAGAGAAT 1225
||||.|..||||||||||..|.||.||||||||||||||.||||||||||
RBAM_037660__ 1170 GGATATCGCTTGGTCAGATATCAAAAATGCAGGCGTCAGACTCAGAGAAT 1219
BSNT_05205___ 1226 CAGAAGACCAAAAACGCCATATTGATGTCGGCATTTTCGCCGAAGGCGGC 1275
|||.||||||||..||.||||||||||||||.||||..||.||||.||||
RBAM_037660__ 1220 CAGCAGACCAAAGTCGGCATATTGATGTCGGTATTTCGGCAGAAGACGGC 1269
BSNT_05205___ 1276 TATGCATATGTCAATAGAGCAGCCACAAATCAGCCTGACAAAA-----GC 1320
|||||.|||||.||.|||.|....|||.|.||||||||.|||| ||
RBAM_037660__ 1270 TATGCCTATGTGAACAGATCGTTTACAGACCAGCCTGATAAAACCGGTGC 1319
BSNT_05205___ 1321 AATACCTTTGTCGAAAGCAAAGCTCCTTATGATGTAAGCAAACGTAAGGT 1370
|||| |.||||||||||||.||.|.|||.|.||.||||.|....||
RBAM_037660__ 1320 -ATAC----GCCGAAAGCAAAGCCCCATTTGACGGAAACAAAGGGCGCGT 1364
BSNT_05205___ 1371 GCATTTGAAAATACTTGTCGATAAAACAACGATAGAAGTATTTGTTGGCG 1420
.|||.|||||||.||.||.||.|||||||..||.||||||||||..|.||
RBAM_037660__ 1365 CCATCTGAAAATTCTCGTAGACAAAACAAGTATTGAAGTATTTGCAGACG 1414
BSNT_05205___ 1421 ACGGGAAAACCGTTTTTTCAAATGAAGTCTTCCCAAAGCCTGAAGATAAA 1470
||||.|||||||||||..||||||||||.||||||||.|..||||||.|.
RBAM_037660__ 1415 ACGGAAAAACCGTTTTGACAAATGAAGTGTTCCCAAAACACGAAGATCAG 1464
BSNT_05205___ 1471 GGAATTACCCTTTATTCTGACGGCGGCACAGCCTCCTTCAAAAATATAAC 1520
|||||.||.||.|.||||||.||||||.|.||...|||..|..|||| ..
RBAM_037660__ 1465 GGAATCACGCTCTTTTCTGAAGGCGGCTCCGCTGACTTTCAGCATAT-TG 1513
BSNT_05205___ 1521 AG-TGAAACACTTTGATTCGGTTCACGAATAA 1551
|| ||||.||..|.|.||||.||||....||.
RBAM_037660__ 1514 AGATGAAGCATCTCGGTTCGATTCATTCTTAG 1545
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