Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05205 and RBAM_037660

See Amino acid alignment / Visit BSNT_05205 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05205___yveB.1.9828.seq
#    -bsequence dna-align/RBAM_037660___yveB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05205___yveB-RBAM_037660___yveB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05205___yveB-RBAM_037660___yveB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05205___yveB
# 2: RBAM_037660___yveB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1582
# Identity:    1172/1582 (74.1%)
# Similarity:  1172/1582 (74.1%)
# Gaps:          68/1582 ( 4.3%)
# Score: 4220.5
# 
#
#=======================================

BSNT_05205___      1 ATGAACTATATAAAAGCAGGCAAATGGCTAACC---GTATTCCTAACCTT     47
                     |||            |||.|.|||||||   ||   |||.|..|.|.|||
RBAM_037660__      1 ATG------------GCACGAAAATGGC---CCGTTGTAATATTGATCTT     35

BSNT_05205___     48 TTTAGAAATATTGCTGTTTATCGACTTATTTCC-AAAAGAAG-AACA---     92
                     |||.|.....||.||||||.|||.||||.|.|| ||.|.||| .|||   
RBAM_037660__     36 TTTGGGTGCGTTCCTGTTTGTCGGCTTACTGCCGAACAAAAGCCACAATT     85

BSNT_05205___     93 ----TGAC-CAAAAAATAAAATCAAAACAGAAGCCGGACTACCGGGCGGC    137
                         |||| ||||.|       |..|.||.|||...||.|||||.|||||
RBAM_037660__     86 CCTCTGACACAAACA-------CGGAGCATAAGAAAGATTACCGTGCGGC    128

BSNT_05205___    138 ATATCATTTTACGACGCCGGATAAATGGAAAAATGACCCTCAAAAACCGA    187
                     .||||||||||||||.|||||.|||||||||||.|||||||||||.||.|
RBAM_037660__    129 GTATCATTTTACGACCCCGGACAAATGGAAAAACGACCCTCAAAAGCCCA    178

BSNT_05205___    188 TCTATTTTGATGGCAAGTATCATTATTTCTATCTATATAACCGGGATTAC    237
                     |.|.|||.||.||.||.||||||||.|.||||||.|||||.|||||||||
RBAM_037660__    179 TTTTTTTCGAGGGGAAATATCATTACTACTATCTTTATAATCGGGATTAC    228

BSNT_05205___    238 CCAAAAGGCAACGGCACAGAATGGCGCCATGCCGTCTCAGAGGATTTGGT    287
                     ||.||.||||||||.|||||||||||.||.|||||.||||||||.|||||
RBAM_037660__    229 CCGAACGGCAACGGTACAGAATGGCGGCACGCCGTATCAGAGGACTTGGT    278

BSNT_05205___    288 GCACTGGACCGATGAAGGCGTGGCGATTCCGAAATATACAAATCCG--GA    335
                     |||||||||.||.||||||..|||.|||||||||||.||.||  ||  .|
RBAM_037660__    279 GCACTGGACGGACGAAGGCACGGCTATTCCGAAATACACCAA--CGAAAA    326

BSNT_05205___    336 CGGTGACATTTGGACCGGTTCCGTCGTAGTTGATAAAGAGAACACAGCCG    385
                     |||.||.||.|||.|||||||.|||||..||||||||.|.|||||.||.|
RBAM_037660__    327 CGGCGATATATGGTCCGGTTCTGTCGTCATTGATAAACACAACACCGCGG    376

BSNT_05205___    386 GCTTCGGGAAAAATGCGCTTGTCGCGATTGTGACACAGCCCTCAGCCAAA    435
                     |||||||.|||||.|||||.|||||..|...|||.|||||..||||||||
RBAM_037660__    377 GCTTCGGCAAAAACGCGCTGGTCGCCGTCACGACGCAGCCGACAGCCAAA    426

BSNT_05205___    436 GACAAAA-AACAGGAGCAATATTTGTGGTACAGCACAGATAAAGGAAAAT    484
                      |||||| ..|||||.||||||||.|||||||||||.||.|||||||||.
RBAM_037660__    427 -ACAAAAGCCCAGGAACAATATTTATGGTACAGCACGGACAAAGGAAAAA    475

BSNT_05205___    485 CATTCAAATTCTACAGTGGCAACCCCGTTATGCCTAATCCGGGCACAGAC    534
                     |.||.|..|.|||.||||...|.|||||.|||...||||||||.||..|.
RBAM_037660__    476 CGTTTACTTCCTATAGTGATCAGCCCGTGATGAAAAATCCGGGAACTAAG    525

BSNT_05205___    535 GATTTCAGAGATCCGAAAGTCATATGGGATGACCAGGATAACAAATGGGT    584
                     ||||||.|.||.||||||||.||.||||||||.||||||.||||||||||
RBAM_037660__    526 GATTTCCGGGACCCGAAAGTGATCTGGGATGAACAGGATGACAAATGGGT    575

BSNT_05205___    585 CATGGTCATGGCTGAAGGATCAAAAATCGGCTTTTATGAAT---CCGATA    631
                     .||||.||||||.|||||...|||||||||.||||||||||   ||||| 
RBAM_037660__    576 GATGGCCATGGCCGAAGGCGAAAAAATCGGTTTTTATGAATCACCCGAT-    624

BSNT_05205___    632 ATCTT-AAGGACTGGCATTACACAAGCGGATTCTTCCCAGAACAGGCGGG    680
                        || ||..|.|||.|.|||||..||||.||..||.|..|.|||...||
RBAM_037660__    625 ---TTAAAAAATTGGAAATACACGGGCGGTTTTATCACTCAGCAGATCGG    671

BSNT_05205___    681 AATGGTGGAATGTCCCGACCTCTACATGATGCGGGCAAGCGACGGAACGA    730
                     ..|.||.|||||.||||||||.||.||||||||.|||...||||||||..
RBAM_037660__    672 CCTCGTCGAATGCCCCGACCTTTATATGATGCGTGCAGATGACGGAACAG    721

BSNT_05205___    731 ATAAGTGGGTTCTCGGTGCCAGCGCGAATGGCAAACCGTGGGGCAAACCA    780
                     ..|||||||||||.||.||.|||||.||.||||||||....||||||||.
RBAM_037660__    722 CCAAGTGGGTTCTGGGCGCAAGCGCAAACGGCAAACCCGCAGGCAAACCG    771

BSNT_05205___    781 AATACGTACGCCTACTGGACCGGAAGCTTCGACGGAAAAGAATTCAAAGC    830
                     |||||||||||.||.||||||||||.|||.|||||.||.|||||.|..||
RBAM_037660__    772 AATACGTACGCGTATTGGACCGGAAACTTTGACGGGAAGGAATTTACCGC    821

BSNT_05205___    831 GGATC-AGACTGAAGCCCAATGGCTTGACTATGGCTTCGACTGGTATGGC    879
                     .|||| ||| .|||.|.||||||||.||.||.|||||.||||||||.|||
RBAM_037660__    822 CGATCAAGA-AGAACCGCAATGGCTCGATTACGGCTTTGACTGGTACGGC    870

BSNT_05205___    880 GGTGTGACGTTCGAAGACAGCAAAAGCACAGATCCATTAGA-AAAGCGGT    928
                     ||.||.||.||.||.|||.|.||.|||..|||||| |..|| |||.||.|
RBAM_037660__    871 GGCGTCACATTTGAGGACGGTAATAGCGAAGATCC-TCTGACAAAACGCT    919

BSNT_05205___    929 ATGCGCTTGCCTGGATGAACAATTGGGATTATGCCAACAACACCCCGACA    978
                     |||||||.||.|||||||||||||||||||||.|.||..|.||.||||||
RBAM_037660__    920 ATGCGCTGGCATGGATGAACAATTGGGATTATCCGAATGAAACACCGACA    969

BSNT_05205___    979 ATGAAGAACGGCTTTAACGGCACAGATTCTGTCATACGCAAACTCCGGCT   1028
                     .|.||.|||||||||||||||||.||||||.||.|.||..||.||||.||
RBAM_037660__    970 CTAAAAAACGGCTTTAACGGCACGGATTCTATCGTCCGTGAAATCCGCCT   1019

BSNT_05205___   1029 GAAGGAGCAGGA---TGGAACATACAGCCTCGTCTCACAGCCGATTGAAG   1075
                     ..||.|||||||   .||.|||||||||||.||.|||.|||||.||||||
RBAM_037660__   1020 TCAGCAGCAGGACGGCGGCACATACAGCCTTGTGTCAGAGCCGGTTGAAG   1069

BSNT_05205___   1076 CTTTGGAGCAGCTGACTGTTTCAACTGACGAAATAGAGGATCAGGATGTG   1125
                     |.|||.|.||..|.||...||||||||||...|||||..|..|..|.|||
RBAM_037660__   1070 CATTGAACCAATTAACCTCTTCAACTGACAGCATAGAACACAAACAGGTG   1119

BSNT_05205___   1126 AACGGATCAAAAACATTGTCGATAACAGGTGATACGTACCAGCTTGATAC   1175
                     |||||.|||.|.|||.||.||||.|.|||||||||.||.||||||||||.
RBAM_037660__   1120 AACGGTTCAGAGACACTGCCGATCAAAGGTGATACATATCAGCTTGATAT   1169

BSNT_05205___   1176 GGATCTTTCTTGGTCAGAGCTAAAGAATGCAGGCGTCAGGCTCAGAGAAT   1225
                     ||||.|..||||||||||..|.||.||||||||||||||.||||||||||
RBAM_037660__   1170 GGATATCGCTTGGTCAGATATCAAAAATGCAGGCGTCAGACTCAGAGAAT   1219

BSNT_05205___   1226 CAGAAGACCAAAAACGCCATATTGATGTCGGCATTTTCGCCGAAGGCGGC   1275
                     |||.||||||||..||.||||||||||||||.||||..||.||||.||||
RBAM_037660__   1220 CAGCAGACCAAAGTCGGCATATTGATGTCGGTATTTCGGCAGAAGACGGC   1269

BSNT_05205___   1276 TATGCATATGTCAATAGAGCAGCCACAAATCAGCCTGACAAAA-----GC   1320
                     |||||.|||||.||.|||.|....|||.|.||||||||.||||     ||
RBAM_037660__   1270 TATGCCTATGTGAACAGATCGTTTACAGACCAGCCTGATAAAACCGGTGC   1319

BSNT_05205___   1321 AATACCTTTGTCGAAAGCAAAGCTCCTTATGATGTAAGCAAACGTAAGGT   1370
                      ||||    |.||||||||||||.||.|.|||.|.||.||||.|....||
RBAM_037660__   1320 -ATAC----GCCGAAAGCAAAGCCCCATTTGACGGAAACAAAGGGCGCGT   1364

BSNT_05205___   1371 GCATTTGAAAATACTTGTCGATAAAACAACGATAGAAGTATTTGTTGGCG   1420
                     .|||.|||||||.||.||.||.|||||||..||.||||||||||..|.||
RBAM_037660__   1365 CCATCTGAAAATTCTCGTAGACAAAACAAGTATTGAAGTATTTGCAGACG   1414

BSNT_05205___   1421 ACGGGAAAACCGTTTTTTCAAATGAAGTCTTCCCAAAGCCTGAAGATAAA   1470
                     ||||.|||||||||||..||||||||||.||||||||.|..||||||.|.
RBAM_037660__   1415 ACGGAAAAACCGTTTTGACAAATGAAGTGTTCCCAAAACACGAAGATCAG   1464

BSNT_05205___   1471 GGAATTACCCTTTATTCTGACGGCGGCACAGCCTCCTTCAAAAATATAAC   1520
                     |||||.||.||.|.||||||.||||||.|.||...|||..|..|||| ..
RBAM_037660__   1465 GGAATCACGCTCTTTTCTGAAGGCGGCTCCGCTGACTTTCAGCATAT-TG   1513

BSNT_05205___   1521 AG-TGAAACACTTTGATTCGGTTCACGAATAA   1551
                     || ||||.||..|.|.||||.||||....||.
RBAM_037660__   1514 AGATGAAGCATCTCGGTTCGATTCATTCTTAG   1545


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