Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06185 and RBAM_037250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:38
# Commandline: needle
# -asequence dna-align/BSNT_06185___rocD.1.9828.seq
# -bsequence dna-align/RBAM_037250___rocD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06185___rocD-RBAM_037250___rocD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06185___rocD-RBAM_037250___rocD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06185___rocD
# 2: RBAM_037250___rocD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1247
# Identity: 983/1247 (78.8%)
# Similarity: 983/1247 (78.8%)
# Gaps: 49/1247 ( 3.9%)
# Score: 3990.0
#
#
#=======================================
BSNT_06185___ 1 ATGTTGAAACAGAAAACAAGGGGGAATTCAAATATGACAGCTTTATCTAA 50
|||.|||||||..|.||
RBAM_037250__ 1 ---------------------------------ATGTCAGCTTTCACAAA 17
BSNT_06185___ 51 ATCCAAAGAAATTATTGATCAG----ACGTCTCATTACGGAGCCAACAAT 96
|||..|||||||| ||||| ||.||.||||||||.||.|||||.
RBAM_037250__ 18 ATCTCAAGAAATT----ATCAGCCAAACTTCACATTACGGCGCGAACAAC 63
BSNT_06185___ 97 TATCATCCGCTCCCGATTGTTATTTCTGAAGCGCTGGGTTCTTGGGTAAA 146
||||||||.||.||||||||||||||||||||||.||||..|||||||||
RBAM_037250__ 64 TATCATCCTCTGCCGATTGTTATTTCTGAAGCGCAGGGTGTTTGGGTAAA 113
BSNT_06185___ 147 GGACCCGGAAGGCAATGAATATATGGATATGCTGAGTGCTTATTCTGCGG 196
.|||||.|||||||||.|||||||||||||||||||||||||||||||||
RBAM_037250__ 114 AGACCCTGAAGGCAATCAATATATGGATATGCTGAGTGCTTATTCTGCGG 163
BSNT_06185___ 197 TAAACCAGGGGCACAGACACCCGAAAATCATTCAGGCATTAAAGGATCAG 246
|.|||||||||||||||||.|||||.|||||||||||..|.|||||||||
RBAM_037250__ 164 TGAACCAGGGGCACAGACATCCGAAGATCATTCAGGCGCTGAAGGATCAG 213
BSNT_06185___ 247 GCTGATAAAATCACCCTCACGTCACGCGCGTTTCATAACGATCAGCTTGG 296
||.|||||||||||.||.||||||||||||||.|||||.||||||||.||
RBAM_037250__ 214 GCGGATAAAATCACTCTGACGTCACGCGCGTTCCATAATGATCAGCTCGG 263
BSNT_06185___ 297 GCCGTTTTACGAAAAAACAGCTAAACTGACAGGCAAAGAGATGATTCTGC 346
.||||||||.||.||||||||.||.|||||.||.|||||.||||||||||
RBAM_037250__ 264 TCCGTTTTATGAGAAAACAGCCAAGCTGACCGGAAAAGATATGATTCTGC 313
BSNT_06185___ 347 CGATGAATACAGGAGCCGAAGCGGTTGAATCCGCGGTGAAAGCGGCGAGA 396
||||||||||.||.||.|||||.|||||||||||.||.||||||||||||
RBAM_037250__ 314 CGATGAATACGGGGGCGGAAGCCGTTGAATCCGCTGTCAAAGCGGCGAGA 363
BSNT_06185___ 397 CGCTGGGCGTATGAAGTGAAGGGCGTAGCTGACAATCAAGCGGAAATTAT 446
||||||||.|||||.||.||.||.|||||.||.|||||.||||||||.||
RBAM_037250__ 364 CGCTGGGCATATGAGGTCAAAGGGGTAGCGGATAATCAGGCGGAAATCAT 413
BSNT_06185___ 447 CGCATGTGTCGGGAACTTCCACGGCCGCACGATGCTGGCGGTATCTCTTT 496
.||.|||.||||.||||||||||||.|.||||||||.||||||||.||||
RBAM_037250__ 414 TGCGTGTATCGGCAACTTCCACGGCAGAACGATGCTTGCGGTATCCCTTT 463
BSNT_06185___ 497 CTTCTGAAGAGGAATATAAACGAGGATTCGGCCCGATGCTTCCGGGAATC 546
||||.|||||.||.||||||||.||.|||||.||.|||||||||||.||.
RBAM_037250__ 464 CTTCAGAAGATGAGTATAAACGCGGTTTCGGACCTATGCTTCCGGGTATA 513
BSNT_06185___ 547 AAACTCATTCCTTACGGCGATGTGGAAGCGCTTCGACAGGCCATTACGCC 596
|||.|.|||||.|||||.||.|..||||||||.||.|.|||.||||||||
RBAM_037250__ 514 AAATTAATTCCATACGGAGACGCAGAAGCGCTGCGCCGGGCGATTACGCC 563
BSNT_06185___ 597 GAATACAGCGGCATTCTTGTTTGAACCGATTCAAGGCGAAGCGGGTATTG 646
|||.|||||.||.|||||.||.|||||||||||.||.||||||||.||.|
RBAM_037250__ 564 GAACACAGCCGCTTTCTTATTCGAACCGATTCAGGGAGAAGCGGGCATCG 613
BSNT_06185___ 647 TAATTCCGCCGGAAGGATTTTTACAGGAAGCGGCGGCGATTTGTAAGGAA 696
|.||.||||||||||||||||||||.||||||||.||.||||||||||||
RBAM_037250__ 614 TCATCCCGCCGGAAGGATTTTTACAAGAAGCGGCCGCCATTTGTAAGGAA 663
BSNT_06185___ 697 GAGAATGT-CTTGTTTATTGCGGATGAAATTCAAACGGGTCTCGGACGTA 745
||.||||| ||| .|.||.||.|||||||||||.|||||.|||||.||.|
RBAM_037250__ 664 GAAAATGTGCTT-CTGATCGCTGATGAAATTCAGACGGGACTCGGCCGCA 712
BSNT_06185___ 746 CAGGCAAGACGTTTGCCTGTGACTGGGACGGCATTGTTCCGGATATGTAT 795
||||.||.||.||.||...|||||||||....||.||.||||||||||..
RBAM_037250__ 713 CAGGGAAAACATTCGCGGTTGACTGGGAAAATATCGTACCGGATATGTTC 762
BSNT_06185___ 796 ATCTTGGGCAAAGCGCTTGGCGGCGGTGTGTTCCCGATCTCATGCATTGC 845
|||||.||||||||.||.|||||.||.||.||||||||.||.|||||.||
RBAM_037250__ 763 ATCTTAGGCAAAGCACTCGGCGGGGGCGTCTTCCCGATTTCGTGCATCGC 812
BSNT_06185___ 846 GGCGGACCGCGAGATCTTAGGCGTGTTTAACCCTGGCTCACACGGCTCCA 895
||||.||||.||.||..|.||.|||||||||||.||.||.||||||||.|
RBAM_037250__ 813 GGCGAACCGTGATATTCTCGGTGTGTTTAACCCGGGTTCCCACGGCTCGA 862
BSNT_06185___ 896 CATTTGGCGGAAACCCGCTTGCATGTGCAGTGTCTATTGCCTCATTGGAA 945
||||.||||||||||||||.||.||.||.||.||..|.||.||..|.|||
RBAM_037250__ 863 CATTCGGCGGAAACCCGCTCGCTTGCGCGGTATCGCTCGCATCTCTTGAA 912
BSNT_06185___ 946 GTGCTGGAGGATGAAAAGCTGGCGGATCGTTCTCTTGAGCTTGGAGAATA 995
||.||.|||||.|||..||||||.||.|||||.|||.|||||||....||
RBAM_037250__ 913 GTCCTTGAGGAAGAAGGGCTGGCAGAGCGTTCCCTTCAGCTTGGCCGTTA 962
BSNT_06185___ 996 CTTTAAAAGCGAGCTTGAGAGCATTGACAACCCGGTTATTAAAGAAGTCC 1045
.||||||...||||||||||..||.||.||.|||.|.||.|||||.||.|
RBAM_037250__ 963 TTTTAAAGAAGAGCTTGAGAAAATCGATAATCCGATCATAAAAGACGTGC 1012
BSNT_06185___ 1046 GCGGCAGAGGGCTGTTTATCGGTGTGGAATTGACTGAAGCGGCACGTCCG 1095
||||..|.||.|||||||||||.||.|||.||||.||||||||.||.|||
RBAM_037250__ 1013 GCGGTCGCGGCCTGTTTATCGGCGTTGAACTGACAGAAGCGGCCCGCCCG 1062
BSNT_06185___ 1096 TATTGTG---AGCGTTTGAAGGAAGAAGGGCTTTTATGCAAGGAAACGCA 1142
||.|||| ||| ||||.|..|||||||||||||||||.|||||.||
RBAM_037250__ 1063 TACTGTGAAAAGC---TGAAAGGCGAAGGGCTTTTATGCAAAGAAACACA 1109
BSNT_06185___ 1143 TGATACAGTCATTCGTTTTGCACCGCCATTAATCATTTCCAAAGAGGATT 1192
||||||.||.||.||||||||||||||.|||||.||||||||.||.||.|
RBAM_037250__ 1110 TGATACCGTGATCCGTTTTGCACCGCCGTTAATGATTTCCAAGGAAGACT 1159
BSNT_06185___ 1193 TGGATTGGGCGATAGAGAAAATTAAGCACGTGCTGCAAAACGCATAA 1239
||||.||||||||..|.||.||.|...|||||||.||||||||.|||
RBAM_037250__ 1160 TGGACTGGGCGATCCAAAAGATCACAAACGTGCTTCAAAACGCGTAA 1206
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