Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06184 and RBAM_037240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:38
# Commandline: needle
# -asequence dna-align/BSNT_06184___rocE.1.9828.seq
# -bsequence dna-align/RBAM_037240___rocE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06184___rocE-RBAM_037240___rocE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06184___rocE-RBAM_037240___rocE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06184___rocE
# 2: RBAM_037240___rocE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1417
# Identity: 1134/1417 (80.0%)
# Similarity: 1134/1417 (80.0%)
# Gaps: 29/1417 ( 2.0%)
# Score: 4497.0
#
#
#=======================================
BSNT_06184___ 1 GTGAATACAAACCAAGATAACGGAAATCAGCTCCAGCGGACAATGAAATC 50
|||||||||||.||| ||.|..||||||||.|||||.|||||||||||
RBAM_037240__ 1 GTGAATACAAATCAA---AAAGAGAATCAGCTTCAGCGCACAATGAAATC 47
BSNT_06184___ 51 ACGCCACTTGTTCATGATTTCATTGGGCGGAGTGATCGGAACCGGTTTCT 100
||||||.|||||.||||||||.|||||||||||||||||.|||||.||.|
RBAM_037240__ 48 ACGCCATTTGTTTATGATTTCTTTGGGCGGAGTGATCGGCACCGGGTTTT 97
BSNT_06184___ 101 TCCTTGGAACCGGGTTTACCATTAACCAAGCGGGACCGCTCGGCGCGGTT 150
||||..|.|||||.|||||.||||||||.|||||||||||.|||||||||
RBAM_037240__ 98 TCCTGAGTACCGGATTTACAATTAACCAGGCGGGACCGCTGGGCGCGGTT 147
BSNT_06184___ 151 CTGTCCTATTTAGTGGGCGGCTTTATCATGTTTTTGACGATGCTCTGCTT 200
|||||.|||.|.||.|||||.|||||.|||||||||||.|||||||||||
RBAM_037240__ 148 CTGTCTTATCTGGTCGGCGGTTTTATTATGTTTTTGACAATGCTCTGCTT 197
BSNT_06184___ 201 AGGAGAGCTGGCAGTCGCCTTTCCTGTGTCAGGGTCCTTCCAGACCTATG 250
|||.|||||.||.||.|||.||||.||.||||||||.||.|||||.||.|
RBAM_037240__ 198 AGGCGAGCTTGCGGTTGCCCTTCCCGTATCAGGGTCGTTTCAGACGTACG 247
BSNT_06184___ 251 CGACAAAATTTATCAGCCCGGCCTTCGGGTTTGCGTTCGGCTGGCTGTAC 300
|.||.|||||.||||||||.||.|||||.||.||.|||||||||||||||
RBAM_037240__ 248 CAACCAAATTCATCAGCCCCGCTTTCGGTTTCGCATTCGGCTGGCTGTAC 297
BSNT_06184___ 301 TGGCTCGGCTGGGCGGTTACATGCGCCATTGAATTCTTATCAGCGGGGCA 350
|||||||||||||||||.||||||||||||||.||.|||||.|||||.||
RBAM_037240__ 298 TGGCTCGGCTGGGCGGTGACATGCGCCATTGAGTTTTTATCTGCGGGACA 347
BSNT_06184___ 351 GCTGATGCAACGATGGTTTCCGCATATAGACGTGTGGATCTGGTGTCTGG 400
..||||||..||.||||||||||||.|...|||.|||.|.|||||.||.|
RBAM_037240__ 348 ATTGATGCTCCGCTGGTTTCCGCATGTTCCCGTATGGGTGTGGTGCCTCG 397
BSNT_06184___ 401 TCTTTG-CGGCACTGATGTTTATTTTAAATGCGATCACCACAAAAGCCTT 449
|.|||| ||| ||||||||||.||||.||.||.||.|||||||||||.||
RBAM_037240__ 398 TGTTTGTCGG-ACTGATGTTTCTTTTGAACGCCATTACCACAAAAGCGTT 446
BSNT_06184___ 450 TGCGGAATCAGAATTCTGGTTTTCAGGCATTAAAATTTTGATTATCCTTT 499
.||.||.||.|||||.||||||||.||.|||||||||||..|.||.||..
RBAM_037240__ 447 CGCTGAGTCGGAATTTTGGTTTTCCGGTATTAAAATTTTAGTCATTCTGC 496
BSNT_06184___ 500 TATTTATTATTCTCGGCGGAGCTGCCATGTTTGGCCTGATTGATCTGAAG 549
|.|||||||||.|.|||||.||.||||||||.|||||||||||..||||.
RBAM_037240__ 497 TGTTTATTATTTTGGGCGGCGCCGCCATGTTCGGCCTGATTGACATGAAA 546
BSNT_06184___ 550 GGCGGAGAGCAGGCGCCGTTTTTGACACATTTTTATGAAGACGGGTTATT 599
..|||.||||||||.||.||.||..|.|||||||||||.||.||.||.||
RBAM_037240__ 547 CACGGCGAGCAGGCTCCTTTCTTCTCTCATTTTTATGAGGATGGATTGTT 596
BSNT_06184___ 600 TCCGAACGGCATAAAGGCAATGCTGATTACGATGATTACCGTGAACTTTG 649
||||||||||||.|||||.|||||.|||||||||||||||||.|||||.|
RBAM_037240__ 597 TCCGAACGGCATTAAGGCTATGCTTATTACGATGATTACCGTAAACTTCG 646
BSNT_06184___ 650 CGTTTCAGGGGACTGAGCTGATCGGGGTTGCAGCCGGAGAAAGTGAAGAC 699
||||.|||||.||.|||||||||||||||||.||.||||||||||||.|.
RBAM_037240__ 647 CGTTCCAGGGAACGGAGCTGATCGGGGTTGCCGCGGGAGAAAGTGAAAAT 696
BSNT_06184___ 700 CCTGAAAAAACGATTCCACGGTCAATCAAACAGACAGTATGGAGAACGCT 749
||.||.|||||||||||.||.||.|||...|||||.||||||||||||||
RBAM_037240__ 697 CCCGAGAAAACGATTCCGCGCTCTATCCGGCAGACGGTATGGAGAACGCT 746
BSNT_06184___ 750 TGTCTTCTTTGTGCTTTCAATCATTGTCATTGCCGGCATGATTCCGTGGA 799
||||||.||.||.||.||.|||||.|||||||||||||||||||||||||
RBAM_037240__ 747 TGTCTTTTTCGTTCTCTCCATCATCGTCATTGCCGGCATGATTCCGTGGA 796
BSNT_06184___ 800 AACAGGCGGGTGTCGTGGAAAGTCCATTTGTTGCCGTATTTGAGCAAATC 849
|.||||||||.||.||.|||||.||.|||||.|..||.|||||.||||||
RBAM_037240__ 797 AGCAGGCGGGAGTGGTCGAAAGCCCGTTTGTCGTGGTGTTTGAACAAATC 846
BSNT_06184___ 850 GGGATCCCATATGCAGCTGATATCATGAACTTTGTTATTTTAATCGCGCT 899
||.||.||||||||.||.|||||.||||||||||||||.|||||.|||||
RBAM_037240__ 847 GGTATTCCATATGCCGCCGATATTATGAACTTTGTTATCTTAATTGCGCT 896
BSNT_06184___ 900 GTTATCTGTTGCGAATTCAG----GTTTATACGCATCGACACGTATTCTG 945
|.|.||.||.||.||.|||| |||| ||||||||.|||||..|.
RBAM_037240__ 897 GCTCTCAGTGGCCAACTCAGGCCTGTTT----GCATCGACGCGTATCTTA 942
BSNT_06184___ 946 TACGCGATGGCGAATGAAGGACAGGCCTTCAAAGCGCTCGGAAAAACAAA 995
||.||.||||||||.||||||||.|||||.|||.|||||||.||||.|||
RBAM_037240__ 943 TATGCCATGGCGAACGAAGGACAAGCCTTTAAATCGCTCGGCAAAATAAA 992
BSNT_06184___ 996 TCAGCGCGGTGTGCCGATGTACTCGTTAATCGTAACGATGGCTGTGGCCT 1045
|.|.|||||.|||||||||.||.|..|.|||||.|||.||||.||.||||
RBAM_037240__ 993 TAAACGCGGCGTGCCGATGAACGCTCTGATCGTGACGCTGGCCGTCGCCT 1042
BSNT_06184___ 1046 GCCTATCACTTCTGACAAAGTT---TGCGCAGGCTGAAACT-GTATATAT 1091
||||.||.||.|||.|.|||.| |||||.|| ||.| ||.|||||
RBAM_037240__ 1043 GCCTGTCCCTGCTGTCTAAGGTGGCTGCGCCGG----AAGTCGTTTATAT 1088
BSNT_06184___ 1092 GGTACTGTTATCTTTGGCGGGTATGAGCGCGCAGGTCGGCTGGATTACGA 1141
|.|.||.|||||.||.||.||..|.|||||||||||||||||||||||||
RBAM_037240__ 1089 GTTTCTCTTATCATTAGCCGGACTAAGCGCGCAGGTCGGCTGGATTACGA 1138
BSNT_06184___ 1142 TCTCGCTTTCCCAAATCATGTTTAGACGCAAATATATCCGCGAAGGCGGG 1191
|.||.||.||.||..|.|||||.|||||.|||||.||||||||||||||.
RBAM_037240__ 1139 TTTCCCTGTCGCAGCTGATGTTCAGACGGAAATACATCCGCGAAGGCGGC 1188
BSNT_06184___ 1192 AAGATAGAAGATTTGAAATTTAAAACACCGCTGTACCCGGTGCTTCCGCT 1241
||..|.|||||..||||.||||||||||||||||||||||||||.||..|
RBAM_037240__ 1189 AAAGTGGAAGACCTGAAGTTTAAAACACCGCTGTACCCGGTGCTGCCTAT 1238
BSNT_06184___ 1242 GATCGGCCTAACATTAAATACGGTCGTGCTCATCAGTCTTGCATTTGATC 1291
.|||||.||.||.|||||||||||.||.||.|||||.||.|||||||||.
RBAM_037240__ 1239 TATCGGGCTGACGTTAAATACGGTTGTTCTGATCAGCCTCGCATTTGATT 1288
BSNT_06184___ 1292 CGGAGCAGCGTATCGCGCTGTATTGCGGCGTACCGTTTATGGTCATTTGC 1341
|.||.|||||..||||.||.|||||||||.|.|||||.||||...|.|||
RBAM_037240__ 1289 CAGAACAGCGGCTCGCCCTTTATTGCGGCATCCCGTTCATGGCGGTGTGC 1338
BSNT_06184___ 1342 TACATCATTTATCATGTCGTCAT-TAAAAAACGC--CAGCAGGC-GAATC 1387
...|||.|.||||||.| || || ||||||| || .|||||.| ||| .
RBAM_037240__ 1339 GTTATCGTCTATCATCT-GT-ATGTAAAAAA-GCATAAGCAGTCAGAA-A 1384
BSNT_06184___ 1388 GTCAGCTAGAGCTTTAA 1404
..|||.|||||||||||
RBAM_037240__ 1385 AACAGATAGAGCTTTAA 1401
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