Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06172 and RBAM_037150

See Amino acid alignment / Visit BSNT_06172 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:38
# Commandline: needle
#    -asequence dna-align/BSNT_06172___yydA.1.9828.seq
#    -bsequence dna-align/RBAM_037150___yydA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06172___yydA-RBAM_037150___yydA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06172___yydA-RBAM_037150___yydA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06172___yydA
# 2: RBAM_037150___yydA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 481
# Identity:     436/481 (90.6%)
# Similarity:   436/481 (90.6%)
# Gaps:           2/481 ( 0.4%)
# Score: 1998.0
# 
#
#=======================================

BSNT_06172___      1 GTGAATATCAATATTGTGACAATCGGAAAACTAAAAGAAAAATACCTCAA     50
                     ||||||||||||||||||||.|||||||||||||||||||||||||||||
RBAM_037150__      1 GTGAATATCAATATTGTGACCATCGGAAAACTAAAAGAAAAATACCTCAA     50

BSNT_06172___     51 ACAAGGCATTGAAGAATACACCAAACGACTTTCGGCCTACGCAAAAATCG    100
                     .|||||||||||||||||||..||||||||.||.||||||||||||||||
RBAM_037150__     51 GCAAGGCATTGAAGAATACAAAAAACGACTCTCAGCCTACGCAAAAATCG    100

BSNT_06172___    101 ACATCATCGAACTCCCGGACGAAAAAGCGCCGGAAAACCTAAGCGACCAG    150
                     |||||||.||||||||||||||||||||||||||||||||.||||||||.
RBAM_037150__    101 ACATCATTGAACTCCCGGACGAAAAAGCGCCGGAAAACCTGAGCGACCAA    150

BSNT_06172___    151 GACATGAAAATCATAAAAGACAAAGAAGGCGACCGCATCCTATCAAAAAT    200
                     ||||||||||||.|.|||||||||||||||||.||||||||..|.|||||
RBAM_037150__    151 GACATGAAAATCGTCAAAGACAAAGAAGGCGAACGCATCCTGGCCAAAAT    200

BSNT_06172___    201 CAGCCCCGACGCCCACGTCATCGCCCTCGCCATCGAAGGAAAAATGAAAA    250
                     ||||||.|||.|||||||||||||||||||||||||||||||||||||||
RBAM_037150__    201 CAGCCCGGACACCCACGTCATCGCCCTCGCCATCGAAGGAAAAATGAAAA    250

BSNT_06172___    251 CATCCGAAGAACTAGCCGATACAATAGATAAGCTGGCGACATATGGAAAA    300
                     |||||||||||||.||||||||||||||||||||||||||||||||||||
RBAM_037150__    251 CATCCGAAGAACTGGCCGATACAATAGATAAGCTGGCGACATATGGAAAA    300

BSNT_06172___    301 AGCAAAGTCACCTTCGTCATCGGCGGATCACTCGGATTGAGCGACGCGGT    350
                     ||||||.|||||||||||||||||||.|||||.||||||||.|||||.||
RBAM_037150__    301 AGCAAAATCACCTTCGTCATCGGCGGCTCACTAGGATTGAGTGACGCAGT    350

BSNT_06172___    351 AATGAAGCGAGCGGATGAGAAGCTGTCATTCTCGAAAATGACGTTCCCTC    400
                     .|||||||||||.|||||.||||||||.||.|||||.|||||.||.||||
RBAM_037150__    351 GATGAAGCGAGCAGATGAAAAGCTGTCGTTTTCGAAGATGACATTTCCTC    400

BSNT_06172___    401 ATCAGTTGATGCGGCTCATACTAGTGGAGCAGATTTATCGGGCTTTTCGG    450
                     |||||.|.||||||||.||..|.||||||||||||||||||||.||||||
RBAM_037150__    401 ATCAGCTCATGCGGCTGATTTTGGTGGAGCAGATTTATCGGGCGTTTCGG    450

BSNT_06172___    451 ATTAATCGTGGGGAACCGTATCACAAATAG-    480
                     ||.|||||||||||.||.|||||.||.| | 
RBAM_037150__    451 ATAAATCGTGGGGAGCCTTATCATAAGT-GA    480


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