Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04810 and RBAM_037030
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:20
# Commandline: needle
# -asequence dna-align/BSNT_04810___pucD.1.9828.seq
# -bsequence dna-align/RBAM_037030.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04810___pucD-RBAM_037030.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04810___pucD-RBAM_037030.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04810___pucD
# 2: RBAM_037030
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2943
# Identity: 1280/2943 (43.5%)
# Similarity: 1280/2943 (43.5%)
# Gaps: 1317/2943 (44.8%)
# Score: 2209.0
#
#
#=======================================
BSNT_04810___ 1 ATGATCAT--CAATAAACCGTCAAGAGTCAGGC---CGGATGGAAG---- 41
| .|.||.|.||..|||||| |.| ||.|..||.|
RBAM_037030 1 -------TTGGAGTATATCGGGAAGAGT--GTCATTCGAAAAGAGGCTCT 41
BSNT_04810___ 42 -GGATAAGGTCACAGGGGAATTGAAATATATGACCGATCTCAGCTTTCCG 90
||| ||.||.||.||..||..||||||| ||.||| |.|||.|.
RBAM_037030 42 TGGA-AAAGTGACGGGTAAAGCGAAATAT---ACGGAT----GATTTTCA 83
BSNT_04810___ 91 GGA---ATGC----TGTATGGCAAGGTGCTGAGAAGTGCTTATCCTCATG 133
.|| |.|| |..|.|..||..|||||...|||.|.|||.|.||||
RBAM_037030 84 AGAAACAGGCACATTACACGCAAAAATGCTGGTCAGTCCATATGCGCATG 133
BSNT_04810___ 134 CAGAGATTGTGTCGGTTTGCACCAT--AAAAGCTGAGAAAATGGAAGGCG 181
|.||.|||||||| |.||.||..| |.||||| ||||||
RBAM_037030 134 CCGATATTGTGTC--TATGGACTTTTCAGAAGCT-------TGGAAG--- 171
BSNT_04810___ 182 TGCAGGCCGTCGTCACACATAAAGACGTTCCCGGC-TTAAACCGAT-TTG 229
.|||||||| |.|.|.|||| |||
RBAM_037030 172 --------------------------ATTCCCGGCGTGAGAGCGATATTG 195
BSNT_04810___ 230 G--------CATTGTCATCCCT-----------------------GATCA 248
| |.||.|| |.|| ||||
RBAM_037030 196 GGTGATGAACCTTTTC--CGCTTGCAGGTGAGGAAATTAAAGACAGATC- 242
BSNT_04810___ 249 GCCGGTT--TTATGTGAGGACAGGGTGCGGTATGTCGGGGATGCGATCGC 296
||||.|| |||| .|.|||||..|.||....||.||..||.|.||
RBAM_037030 243 GCCGATTGCTTAT-----AAAAGGGTTAGATACCATGGTGAGCCGGTTGC 287
BSNT_04810___ 297 CGCAGTTGCTGCGGAAA--CGGA----AG--AAATCGCGGAAGCGGCGCT 338
.|..||||.|||||||| |.|| || ||| ||| |.|||
RBAM_037030 288 TGTTGTTGTTGCGGAAAATCCGATTACAGCTAAA------AAG-GCCGC- 329
BSNT_04810___ 339 GGAGCTG--ATTCGAGTTGAGTATAAAGAGCTGGAAGTCATGGATTCCCC 386
||| || ||...|||....||||||...||....|||.|..|||||||
RBAM_037030 330 GGA--TGCCATCAAAGTATCCTATAAACCTCTTCCCGTCGTCAATTCCCC 377
BSNT_04810___ 387 -----AG------AAAAAGCGAT-------TCGGCC--GA--ATGCGCA- 413
|| .||||| ||| |||.|| || |||||.|
RBAM_037030 378 CCGTGAGGCCTTTCAAAAG-GATGCGCCGCTCGTCCATGAACATGCGGAC 426
BSNT_04810___ 414 ---------AAGAC------TGCAT----------GAGGACGGGAATAT- 437
||||| ||.|| ||.||| .|||||
RBAM_037030 427 CGCTATGAGAAGACAAAAGGTGTATTCCCGGTTCCGAAGAC--CAATATC 474
BSNT_04810___ 438 -----CCTGCACCGCGCATTTT----TTTCAAACGGCGATGTGGAAGAAG 478
||||.| | ||..|||.||..||.|.|||||.|
RBAM_037030 475 GCAAACCTGGA----------TAAGGTTAGAAAAGGAAATATTGAAGACG 514
BSNT_04810___ 479 GGTTT----CAAG-CATCTGACA---------CAG---TCCTTGAAGAAA 511
||||| .||| .||.||||| ||| ||||| .||
RBAM_037030 515 GGTTTAGGGAAAGTGATGTGACAGCAGAATTCCAGATTTCCTT----TAA 560
BSNT_04810___ 512 CC--TATGA----GCTGCCGCGG----CAGATGCATACGTATATGGAAAC 551
|| |.||| |||||...|| ||||||| .||..|.|.||||
RBAM_037030 561 CCCTTCTGATCACGCTGCGATGGAAACCAGATGC--TCGATTGTTGAAA- 607
BSNT_04810___ 552 GGAGGGAGGCGTAGCCGTTC---CGGAAGACGACGGGGGTTTTACGATGT 598
||| ||||.||.|| ||| |
RBAM_037030 608 -----------------TTCGGGCGGATGAGGA------------GAT-T 627
BSNT_04810___ 599 ATGCAGGAACCCAGCACGGCTATAAAGACCGTTTCCAGCTTGCC------ 642
|| ||..|.|.||.| ||.|.|||..|.|| |||||
RBAM_037030 628 AT-CATTACCACATC----CTCTCAAGCTCCTT------TTGCCATTAAA 666
BSNT_04810___ 643 -------------CGTATTTTTGACAT----TCCTGAAGAGAAGATCAGG 675
.|||||||.|| || .||.||| ||..||||
RBAM_037030 667 AAATTAATGCAGTGGTATTTTGGA-ATCGAACCCGGAA-AGGTGATC--- 711
BSNT_04810___ 676 ATTGTGTCAAGTCCGA----------TGGGCGGCTCGTTCGGAGGAAAGG 715
||||| | |.||.||..|||.|||||||||.|
RBAM_037030 712 -----GTCAA-----AACGCCTTTAGTAGGTGGGGCGTACGGAGGAAAAG 751
BSNT_04810___ 716 ATGAGCTGAATATTCAGCCGT--------------ATGCCGCGCT-TTTG 750
||||||| .||| || ||||
RBAM_037030 752 --------------CAGCCGTTCAGTTAGAGGTGATTGC----CTATTTG 783
BSNT_04810___ 751 TCACTGAAAAGC-------GGACGTCCTGTCAAAATCCATCAGACACGAA 793
.|| |.|||||| ||.||.||.||||||.|...|.|.||..||.
RBAM_037030 784 GCA-TCAAAAGCAGTCGGAGGCCGGCCCGTCAAATTGTTTAATACGAGAG 832
BSNT_04810___ 794 AGGA--ATCTGTA----------CGTTC---------TGGCATTAAGCGC 822
|.|| ||||| | ||||| ||| || ||
RBAM_037030 833 AAGAGGATCTG-ATCACATCTCCCGTTCATATCGGGTTGG-AT-----GC 875
BSNT_04810___ 823 CATCCGATG--AAGATTA--CGATAAAAACGGGTGCGGATCATTCGGGAA 868
||| || || |||| .|.||.||| |||| |.|
RBAM_037030 876 CAT----TGTCAA-ATTAGGGGCTACAAA-------GGAT-------GGA 906
BSNT_04810___ 869 ATC-TATTGGC-GCATGACGTGAA------AATTG-TGGCGGACACAGGC 909
||| ||..||| ||| |||.|..| |.||| |||||||
RBAM_037030 907 ATCTTAAAGGCGGCA-GACATTCAGCTTTTATTTGATGGCGGA------- 948
BSNT_04810___ 910 GCATATGCT-------------ACGCTCGGACCGGCT---GTTCTTGATT 943
||.|||.|| || .||.|.|.|||| ||..||||||
RBAM_037030 949 GCGTATTCTGATAAAGGAGTGGAC-ATCAGCCGGGCTGCGGTGGTTGATT 997
BSNT_04810___ 944 TTTCTGTCGAGCATGCCGCGGGGCCGTAC-CGTATTCCGA--ATATCCGG 990
.| .||||.|||||| || || ||| ||||.|||
RBAM_037030 998 GT---------------ACGGGTCCGTACGCG-AT--CGATCATATACGG 1029
BSNT_04810___ 991 ACTGAAGGAATATCAGTATT-------TACGAA-----------CAACGG 1022
..||| .||| |||| |||||| |||
RBAM_037030 1030 TGTGA------TTCA-TATTGTATGTATACGAATCATCCATATCCAA--- 1069
BSNT_04810___ 1023 GGTG---GCGGGGGA--------------------ATTT---------CG 1040
||| .|.||||| |||| ||
RBAM_037030 1070 -GTGCATTCAGGGGATACAGCCATGCTGAAGTGTTATTTGCCTTTGAGCG 1118
BSNT_04810___ 1041 G--------GGTTTTGGCGGCAA-------------------------CC 1057
| .||.|||||||.|| ||
RBAM_037030 1119 GACGATGGATGTATTGGCGGAAAAGCTGAACATGGATCCATTAGAACTCC 1168
BSNT_04810___ 1058 -------AAATCACATTTGC-------ACTCGAAACCCATCTC--GATCG 1091
||||..||||.|| ||.|.|.|||.| ||| |.||.
RBAM_037030 1169 GCTATAAAAATGCCATTCGCCCCGGTGACACCACACCGA-CTCAAGTTCT 1217
BSNT_04810___ 1092 TCTCAGCGGCAT----GCTCGGCATCG---ACCCGCTCGA---GC--TGA 1129
||||| || ||.||| ||| |...|| ||| || |||
RBAM_037030 1218 TCTCA-----ATTCAAGCACGG--TCGGAAATGTGC-CGAAATGCATTGA 1259
BSNT_04810___ 1130 GAAGA---AA--AAATATCAGAAAACCGCATGACTTGGGGCCGCTTGAG- 1173
| ||| || ||.|| ||||.||||..| |||
RBAM_037030 1260 G-AGATTGAAGGAATTA------------ATGAATTGGTCC-----GAGG 1291
BSNT_04810___ 1174 --CATCGAATTGCA--------CC--AACTGACGG------------AGC 1199
||.|||||||.| || ||...|||| |||
RBAM_037030 1292 GACAGCGAATTGAAATCGATGGCCGGAAGATACGGGCGAAGGGAATCAGC 1341
BSNT_04810___ 1200 GGCACAGGTGTTGAATGC-----CAT---ATCTAAAT-----CTCC---- 1232
.||| |.|.|||..| ||| ||..|||| .|||
RBAM_037030 1342 TGCA----TTTGGAAAACCTCAACATTTGATACAAATGCAACGTCCGGGG 1387
BSNT_04810___ 1233 -CATTCTTACAAGAACC----AGCC----GGAACTGC------------- 1260
.||||| |||| |.|| |||| ||
RBAM_037030 1388 TGATTCT------AACCTTTAATCCCGATGGAA--GCATTAATTTGATGT 1429
BSNT_04810___ 1261 ---GGGTATCTGCAAAGAGGCAC-GGGAGCGGCAATTACAATGCACGGCG 1306
||||| .||.|||..||.|| |||| |||..|||.|||
RBAM_037030 1430 CAGGGGTA-GTGGAAATTGGAACAGGGA----CAAAAACAGTGC------ 1468
BSNT_04810___ 1307 GCGGACTGGGGTATGGCCGAATGGATGC-GGCAGGAGGCCGTTTGTCCCT 1355
|.|||.|| ||.| |||.|.|
RBAM_037030 1469 -------------TAGCCCAA---ATCCTGGCGGAA-------------- 1488
BSNT_04810___ 1356 TTCGAGTGA----------AGGCAAAATCACAGCATCGTTTGGATTTGAA 1395
|||.||| |.||||||| ||.|.| ||
RBAM_037030 1489 --CGAATGAAAATGGATATAAGCAAAAT-------TCATGT-------AA 1522
BSNT_04810___ 1396 GAATGCGGACAGGGGATTCTAG-----------------CAGCGATTG-- 1426
.||||| ||.||| .||| ||||
RBAM_037030 1523 AAATGC----------TTATAGATACACAAACAACACCCGAGC-ATTGGA 1561
BSNT_04810___ 1427 -AACAGATTGTCATGGAGGAGTTAGGTTGTGCCGCAGA-GGATATTTCCA 1474
||| |.||| ||| ||||| |||
RBAM_037030 1562 AAAC-------CGTGG-GGA-------------GCAGAGGGA-------- 1582
BSNT_04810___ 1475 TTGTTATTGGGGATACCGCAAAAGTGCC-----GAAGTCAG--------G 1511
.||||.||| |||.||| |||| |||..||| |
RBAM_037030 1583 -CGTTAATGG-----CCGGAAA--TGCCGTACTGAATGCAGCGGAGGAAG 1624
BSNT_04810___ 1512 CTCCTCCACAGC---ATCCCGTGGCACAAGCATG-GTGTGGCACGCGATC 1557
|...||.|.||| |...|||||| |.|||| ||||.| ||.|.||
RBAM_037030 1625 CCATTCGAAAGCTTAAGGACGTGGC---ATCATGTGTGTTG--CGGGTTC 1669
BSNT_04810___ 1558 CAGCT-------TTTGAAGAAGCCG--------------TTTCTAGCTCA 1586
|.| | ||.||||..|||| |||.|||.|||
RBAM_037030 1670 CTG-TCGAGGAATTGGAAGTGGCCGACGGAAAGGTTTATTTTATAGATCA 1718
BSNT_04810___ 1587 -------------GTTGAAAAA-------------ACGG------GCGGC 1604
|||||||.| |||| |...|
RBAM_037030 1719 TCCTTCTGTACATGTTGAAATAAAAGACATTGCTTACGGATATACGTTTC 1768
BSNT_04810___ 1605 AGAATGGAGCGGCTGTTCAGCGGAAAACCTTATTCCCGGCGCTGCAGGC- 1653
.||||||| ||.||| ||| ||| |||
RBAM_037030 1769 CGAATGGA---------------AATACC--ATT---GGC------GGCC 1792
BSNT_04810___ 1654 ------TTGC--GTGACAAAAACACA--AAGGCGCTCGTGGTGACGTATA 1693
|||| |.|.|||..||||| ||..|| |.|||||.||.
RBAM_037030 1793 AAATCATTGCGAGCGGCAATTACACATTAACCCG-----GATGACGAATT 1837
BSNT_04810___ 1694 AGGAGCTGGCTGAAAAAGGCCCTTTGGCAGAGGAAA--CGGCATTTGACT 1741
..||.|.|| |||.| ||.|||||||| |||.|
RBAM_037030 1838 TAGACCGGG-----AAACG------GGAAGAGGAAAGCCGGGA------- 1869
BSNT_04810___ 1742 TTCCAACAACGCCTGATCCTGTGGTGGGCGGCCATTTCCTC--TACTC-- 1787
||.|| ||||||.| || |.|||
RBAM_037030 1870 -----------CCCGA-------GTGGGCTG--------TCGGTGCTCAG 1893
BSNT_04810___ 1788 --ATTTGGAGCGGCTGCCGTTGAGGTGGAGGTAGATCTGTTAACAGG--- 1832
|.|||.| ||||||.|||| |.|||.||
RBAM_037030 1894 GGAATTGAA---------GTTGAGTTGGA----------TAAACGGGATT 1924
BSNT_04810___ 1833 ---CGATGTCAAATTGATAGATTGTGAGCACGCTATTGCGGCAGGTCCGG 1879
|| |.||.|||| |.|.| ||| ||||| |.|
RBAM_037030 1925 ATACG-TATCGAATT-ACAAA-----AGC---CTATT----------CTG 1954
BSNT_04810___ 1880 TTGT-----------CAGT--------------CCGCAGGGATATCGAGG 1904
|||| |.|| |.|||.|| ||
RBAM_037030 1955 TTGTAGATATAGGAACTGTACTGAATGAAAAAGCTGCAAGG-------GG 1997
BSNT_04810___ 1905 TCAAATTGAAGGCGGCGCTG-CCATGGCACTCGGCTACACACTGATGGAG 1953
|| ||.|||.||.||.|.|| ..||||.|.||| ||.| |||||
RBAM_037030 1998 TC-AAGTGATGGGGGGGATGAGTATGGGAATCG------CATT--TGGAG 2038
BSNT_04810___ 1954 GAAGCGAAA---------ATGA--CGGATGGCCG----TT--ATGCTGCG 1986
||||.|||| .||| |..|||||.| || ||.||..|
RBAM_037030 2039 GAAGAGAAACCTTTGTATTTGATTCATATGGCAGAGTATTAAATCCTCAG 2088
BSNT_04810___ 1987 ----GAAAAT-----CTCGATCACTATTTGATTCCCGGA----------- 2016
|||.|| |.|..||||||| |||
RBAM_037030 2089 CTTAGAACATACCGCCCCCTTCACTAT---------GGAGAGCAGCCTGA 2129
BSNT_04810___ 2017 ----ATCA---AAGATGTT-----CCTGACATGAAGCTGATTGCAATAGA 2054
|||| ||..|||| ||.| |||| |||||||
RBAM_037030 2130 ATATATCATTGAATTTGTTGAAACCCCG-CATG----TGATTGC------ 2168
BSNT_04810___ 2055 AGACTTAATGAAGGGAGACGTATATGGACCGCGCGG-------------- 2090
|.|| ||||||.|||||||
RBAM_037030 2169 -GCCT-----------------TATGGAGCGCGCGGCGGCGGGGAACACG 2200
BSNT_04810___ 2091 ---TGTTGGCGA----------AATCGGAACAATCGCCATCACTCCGGCG 2127
||||||.|| |.|.||| |||.|||.| ||||.||
RBAM_037030 2201 GACTGTTGGGGATGCCGGCAGCATTGGGA--AATTGCCTT---TCCGCCG 2245
BSNT_04810___ 2128 ATTGTAAAGGCAGTACATGATGCGGTCGGATGCTGGATAAAC-------- 2169
.|| || |..|||..|| ||.||.|||
RBAM_037030 2246 CTT----------TA------GGTGTCCAAT--TGAATCAACTTCCTCTC 2277
BSNT_04810___ 2170 -------AAGCTGCCAATT---------TCAAGAG-------AAGAGCTG 2196
|| ||||| .|||||| ||||
RBAM_037030 2278 ATTCCCGAA-----CAATTATGGAGGACGCAAGAGGGGTGGAAAGA---- 2318
BSNT_04810___ 2197 CTTGA-AGCGATCGACAGAAAGGGGCTGAAGCAATGGACGTAA 2238
||| |.||.|.||
RBAM_037030 2319 --TGATACCGTTTGA---------------------------- 2331
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