Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00970 and RBAM_036990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_00970___ydgF.1.9828.seq
# -bsequence dna-align/RBAM_036990___ydgF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00970___ydgF-RBAM_036990___ydgF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00970___ydgF-RBAM_036990___ydgF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00970___ydgF
# 2: RBAM_036990___ydgF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1531
# Identity: 882/1531 (57.6%)
# Similarity: 882/1531 (57.6%)
# Gaps: 338/1531 (22.1%)
# Score: 2259.5
#
#
#=======================================
BSNT_00970___ 1 GTGACAGACGACATGACGAAAGACAATATAAATCAGCAAACGT--TGCAG 48
|| .||||
RBAM_036990__ 1 -----------------------------------------GTGGAGCAG 9
BSNT_00970___ 49 AGAG-GCTTGAAAAACAGG--CATATC-------------CAGCTCATCG 82
.||| ||| |||.||| |.|||| |||||.||||
RBAM_036990__ 10 CGAGAGCT----AAAGAGGGACTTATCGAATCGGCACGTGCAGCTGATCG 55
BSNT_00970___ 83 CCATCGGCGGAGCCATTGGGACAGGCTTATTTCTCGGCTCTGGCAAATCG 132
||||.|||||..|.||.||.||.||.||.|||.|.||.|||||.||..||
RBAM_036990__ 56 CCATTGGCGGCACGATCGGCACCGGATTGTTTTTAGGGTCTGGTAAGGCG 105
BSNT_00970___ 133 ATTCATTTTGCCGGACCTTCGATTTTATTTGCTTATATGATCACAGGGAT 182
|||||..|.||.||.|||||.||..|.|||||.|||.|.||...|||
RBAM_036990__ 106 ATTCAGCTGGCGGGTCCTTCTATCATCTTTGCGTATTTTATTGTAGG--- 152
BSNT_00970___ 183 TATT-TGCTTCTTAATT----ATGAGATCGCTGGGTGAACTGCTGTTATC 227
|||| .||||.|| || |||.|..|||||||.||||||||||||||
RBAM_036990__ 153 TATTGCGCTTTTT--TTCGTCATGCGGGCGCTGGGAGAACTGCTGTTATC 200
BSNT_00970___ 228 AAACTTGAACTATCACTCTTTTGTGGACTTTGTACAAGACTACCTAGGCG 277
.||...|..|||.||.||.||...|||..||| ||.|||||
RBAM_036990__ 201 TAAAGCGGGCTACCAATCATTAACGGATATTG----------CCGAGGCG 240
BSNT_00970___ 278 ATAT-----------GGCAGCATTTATCACCGGCTGGACATATTGGTTCT 316
||| .|||||.|||.|||||||||||||.||.|||||.|
RBAM_036990__ 241 -TATTTAGGGCCGCGTGCAGCGTTTGTCACCGGCTGGACCTACTGGTTTT 289
BSNT_00970___ 317 GCTGGATTTCCATTGCGATGGCTGATCTGACAGCAGTCGGGCTCTACACT 366
||||||||...|..||.|||||.|||.|||..||.|||||..|.||....
RBAM_036990__ 290 GCTGGATTATGACGGCTATGGCGGATGTGATCGCCGTCGGTGTGTATGTG 339
BSNT_00970___ 367 CAATATTGGCTCCCGGGTGTGCCGCAATGGGTGCCCGG--CTTAATCGCT 414
.||||||||.| .|.|.|.|||||.|||.| .|||| ||| |||..|
RBAM_036990__ 340 AAATATTGGTT---TGATATTCCGCAGTGGAT-TCCGGCACTT-ATCTGT 384
BSNT_00970___ 415 CTAATTATTTTACTGATTA----TGAACCTGGCGACAGTCAAGCTATTTG 460
.||.|.||||| |||| |.||.|||...||.||.|||.|.||||
RBAM_036990__ 385 TTACTCATTTT----ATTAGGGCTTAATCTGTTAACGGTTAAGATTTTTG 430
BSNT_00970___ 461 GAGAATTAGAATTTTGGTTTGCTTTGATTAA---AGTCATTGCCATTTTG 507
|||||||.||.||||||||.||.||.||||| ||||| |.|||.|.
RBAM_036990__ 431 GAGAATTGGAGTTTTGGTTCGCCTTAATTAAGGTAGTCA---CGATTCTC 477
BSNT_00970___ 508 GCGTTAATCGTCATTGG------CCTTGTGATGATT---TTCAAAGGCTT 548
||||||||.|||||.|| .||..||.||||| ||||||
RBAM_036990__ 478 GCGTTAATTGTCATCGGTGTGGTTCTGCTGGTGATTGGGTTCAAA----- 522
BSNT_00970___ 549 TTCCACAAGC--TCAGGAGTGTCCAGCTTCA----CAAATCTCT-GGAGC 591
|.|| .|.||| .|.|.|||| |.|||||.| ||||
RBAM_036990__ 523 ------ACGCATACCGGA----ACGGTTTCAGCGGCGAATCTGTGGGAG- 561
BSNT_00970___ 592 CACGGAGGCCTGTTCCCGAATGG-----CATGCACGGGTTTATCCTCTCG 636
|||||.|||.||||.|||||.|| || ||.|||.|.||.|||
RBAM_036990__ 562 CACGGCGGCTTGTTTCCGAACGGATTTTCA-----GGCTTTTTGCTTTCG 606
BSNT_00970___ 637 TTCCAGATGGTTGTGTTTGCTTTTGTCGGCATTGAGCTTGTCGGGCTTAC 686
|||||||||||..|.||.||.|.||||||..|.||..|.||.||..|..|
RBAM_036990__ 607 TTCCAGATGGTGATCTTCGCCTATGTCGGTGTGGAATTAGTGGGTGTGTC 656
BSNT_00970___ 687 AGCCGGTGAAACAGAAAACCCTGAAAAAGTA------ATCCCTAAGGCGA 730
.||.|..|||||...|||.|| ||||||..| |||| ||.|
RBAM_036990__ 657 GGCGGCGGAAACGTCAAATCC-GAAAAAAAATATTCCATCC-----GCTA 700
BSNT_00970___ 731 TCAACAATATTCC-TGTCCGTGTGCTGCT----TTTTTATA--TCGGGGC 773
||||.||.||||| | |||.|.| |||||.|| |||||||
RBAM_036990__ 701 TCAATAAAATTCCAT-------TGCGGATTTTATTTTTCTACGTCGGGGC 743
BSNT_00970___ 774 TCTTCTCGTGATTATGAGCATCTATCCTTGGGATGTCA--TCAATCCCAG 821
..|.|||.|..||.|..|.||..||||.| ||||| || |.||| .|.|
RBAM_036990__ 744 ATTGCTCATTCTTTTATGTATTAATCCGT-GGATG-CAGCTGAAT-GCGG 790
BSNT_00970___ 822 C-GAAAGCCCATTCGTACAAGTATTT--GTCGCT-GTTGGCATC------ 861
| |||||.||.||.||| |||...|| || || ||.||||||
RBAM_036990__ 791 CGGAAAGTCCTTTTGTA-AAGACCTTCAGT--CTGGTCGGCATCCCGTTA 837
BSNT_00970___ 862 GTCGGGGCTGCAAGTATTATCAACTTTGTTGTATTGACTTCCGCTGCTTC 911
|.||.|| |.||.||.||.|||||.|||||.||.||.||.|||||
RBAM_036990__ 838 GCCGCGG------GAATCATTAATTTTGTCGTATTAACGTCTGCCGCTTC 881
BSNT_00970___ 912 AGCATGCAACAGC--GCTGTATTCAGTACAAGCCGTATGGTCTATTCCCT 959
.||.||.|||||| |.|||.|||| ||||||||.||..|.|||..|.|
RBAM_036990__ 882 TGCTTGTAACAGCGGGATGTTTTCA--ACAAGCCGGATTTTGTATAACTT 929
BSNT_00970___ 960 -GGCGAAA-GATCACAATGCGCCTGAGTCAA---TGGCGAAACTGACTCA 1004
.||.||| || .|||| ||||| |.||| |.|||||.||||.|.|
RBAM_036990__ 930 AAGCAAAACGA-AACAA-GCGCC---GGCAAGTTTTGCGAAGCTGAATAA 974
BSNT_00970___ 1005 GCGTAAA----GTGCCTAGAAATGCTTTATTCTTTTCAGCTATCGTGATT 1050
||| |||||.||....||.||||...|.||.|.|||.|||.|.
RBAM_036990__ 975 ----AAATCATGTGCCGAGCCGCGCATTATGGATATCGGTTATTGTGCTG 1020
BSNT_00970___ 1051 TTAATCGGTGTTACGTTAAACTACATCATGCCAGAAGGCGTATT----CA 1096
|.|...||.|.|...||||.|.|..|.||.||.||| |||..|| ||
RBAM_036990__ 1021 TCAGCTGGCGCTCTTTTAAGCAAATTGATACCGGAA-GCGGCTTTTGGCA 1069
BSNT_00970___ 1097 CCCTGATCACAAGTATTTCAACCGTATGC----TTTATCTACATTTGG-- 1140
.|.||| |||||.|..|| |||.| |.|||||||
RBAM_036990__ 1070 TCGTGA------------CAACCATCAGCGCGATTTGT-TTCATTTGGGT 1106
BSNT_00970___ 1141 -------GGGATTACGGTCATCTGCCATATGAAATACCGCAAAACAAGAC 1183
|.|||| .|..||||.|||||.|.||||.|.|||||..|.|
RBAM_036990__ 1107 GTGGGGCGTGATT---CTTGTCTGTCATATCAGATACAGGAAAACCCGTC 1153
BSNT_00970___ 1184 CTGAATTAGCGAAAACAAACAAG-------TTTAAGCTTCCGCTTTATCC 1226
|.||.|| |||..|||| ||.|||...|||.||...||
RBAM_036990__ 1154 CGGACTT-------ACACGCAAGCTCGTCTTTCAAGGCGCCGTTTGCGCC 1196
BSNT_00970___ 1227 GTTTACAAATTACCTGATTCTTGCGTTCCTGGC---GTTTG------TTC 1267
|||||..|||||| ||..|.||||| ||||| |||
RBAM_036990__ 1197 GTTTATCAATTAC---------GCCGTGCTGGCGCTGTTTGCCGTCATTC 1237
BSNT_00970___ 1268 TGG---TTGTGCTGGCACTGGCACAGGAT---ACTCGTGTTTCCTTATTT 1311
||| ||.||||| .|.|| |||| ||.|| .||...|||
RBAM_036990__ 1238 TGGTGATTATGCTG---TTTGC---GGATGCAACGCG----CCCGGCTTT 1277
BSNT_00970___ 1312 G----TCACACCGGTTTGGTTTATTTTGCTGATTGTGATTTAT------- 1350
| |.||.|||.|.||||||||| .||||.|...||||
RBAM_036990__ 1278 GCTGCTGACGCCGCTGTGGTTTATT----GGATTATTTCTTATCTATCGG 1323
BSNT_00970___ 1351 ---AAAGTGAGAAAAGCGA-AGCATCAATAA 1377
|.||.|||||| || ||..|.|
RBAM_036990__ 1324 GCGAGAGGGAGAAA---GACAGATTGA---- 1347
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