Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06112 and RBAM_036810
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:36
# Commandline: needle
# -asequence dna-align/BSNT_06112.1.9828.seq
# -bsequence dna-align/RBAM_036810___csbC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06112-RBAM_036810___csbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06112-RBAM_036810___csbC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06112
# 2: RBAM_036810___csbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1407
# Identity: 847/1407 (60.2%)
# Similarity: 847/1407 (60.2%)
# Gaps: 363/1407 (25.8%)
# Score: 3304.0
#
#
#=======================================
BSNT_06112 0 -------------------------------------------------- 0
RBAM_036810__ 1 GTGAAGAAAAACACCAAAAAATACCTGATTTACTTTTTCGGAGCATTAGG 50
BSNT_06112 0 -------------------------------------------------- 0
RBAM_036810__ 51 CGGGCTGCTTTACGGCTATGACACCGGTGTGATTTCAGGGGCTTTGTTAT 100
BSNT_06112 0 -------------------------------------------------- 0
RBAM_036810__ 101 TTATTAACAATGATATTCCTTTAAACACGCTGACCGAGGGATTGGTCGTC 150
BSNT_06112 0 -------------------------------------------------- 0
RBAM_036810__ 151 AGCATGCTGCTGCTCGGTGCGATTTTCGGGTCCGCATTAAGCGGGACATG 200
BSNT_06112 0 -------------------------------------------------- 0
RBAM_036810__ 201 CTCTGACCGATGGGGCCGGAGAAAAGTGGTTTTCGTCCTTTCACTCATTT 250
BSNT_06112 0 -------------------------------------------------- 0
RBAM_036810__ 251 TTATTATCGGCGCGCTTGCCTGTGCGGCTTCGCAAACCGTCACCATGCTG 300
BSNT_06112 1 ------------------------TTGGCCGTCGGCGGTTCAACGGCACT 26
||.||||||||.||.||||||||.||
RBAM_036810__ 301 ATTATCTCCCGTGTCATTCTCGGGTTAGCCGTCGGGGGCTCAACGGCGCT 350
BSNT_06112 27 TGTGCCCGTGTATCTTTCCGAAATGGCACCGACGAAAATTCGCGGGACAC 76
.||.|||||.|||||.||.||.|||||.|||||.|||||.|||||.||.|
RBAM_036810__ 351 GGTTCCCGTTTATCTATCTGAGATGGCGCCGACAAAAATACGCGGAACGC 400
BSNT_06112 77 TCGGCACAATGAACAACTTAATGATTGTCACCGGGATTTTGCTCGCCTAT 126
||||||||.||||.||||||||||||||.|||||.|||||.|||||.|||
RBAM_036810__ 401 TCGGCACATTGAATAACTTAATGATTGTAACCGGAATTTTACTCGCATAT 450
BSNT_06112 127 ATCGTTAACTACCTGTTCACACCGTTTGAAGCGTGGCGCTGGATGGTCGG 176
|||||.||.|||.|.|||||.|||||||||||.|||||||||||||||||
RBAM_036810__ 451 ATCGTGAATTACATATTCACCCCGTTTGAAGCTTGGCGCTGGATGGTCGG 500
BSNT_06112 177 TCTGGCCGCAGTGCCTGCCGTGCTTCTATTAATCGGCATCGCATTCATGC 226
|||.||||||||.||.||.|.||||.||||||||||.|||||.||.||||
RBAM_036810__ 501 TCTCGCCGCAGTACCGGCGGCGCTTTTATTAATCGGAATCGCGTTTATGC 550
BSNT_06112 227 CGGAATCGCCAAGATGGCTCGTGAAGCGCGGCCGTGAAGAAGAAGCGAGA 276
|||||||.||.|||||||||||.||.|||||||||||..|.|||||.|||
RBAM_036810__ 551 CGGAATCTCCGAGATGGCTCGTCAAACGCGGCCGTGAGCAGGAAGCCAGA 600
BSNT_06112 277 CGAATCATGAACATCACTCATGATCCCAAA---GACATCGAAATGGAATT 323
|.|.|||||.|.||.||.||.|| |||| ||.||||...|.|||||
RBAM_036810__ 601 CAAGTCATGGAAATGACCCACGA---CAAAGAGGATATCGCCGTTGAATT 647
BSNT_06112 324 GGCAGAGATGAAGCAAGGAGAAGCAGAGAAAAAAGAAACAACACTCAGCG 373
|||.||.|||||.|||||||||||.||||||||||||.|.||.|||.||.
RBAM_036810__ 648 GGCGGAAATGAAACAAGGAGAAGCCGAGAAAAAAGAATCTACGCTCGGCT 697
BSNT_06112 374 TCCTAAAAGCCAAATGGATTCGCCCTATGCTTCTGAGTGGCGTCGGTCTT 423
|.||.|||||.||||||||.||.||||||||.||||..||..||||.||.
RBAM_036810__ 698 TGCTGAAAGCAAAATGGATCCGTCCTATGCTGCTGATCGGGATCGGCCTC 747
BSNT_06112 424 GCCATTTTTCAGCAGGCTGTCGGCATTAACACGGTCATCTACTACGCGCC 473
|||||.||.||||||||.|||||.||.||||||||.||.|||||.|||||
RBAM_036810__ 748 GCCATCTTCCAGCAGGCGGTCGGTATCAACACGGTGATTTACTATGCGCC 797
BSNT_06112 474 GACCATTTTTACGAAGGCCGGTCTTGGCACGTCAGCTTCCGCACTCGGCA 523
||||||.|||||.||||||||.||.|||||.||.||.||||..|||||||
RBAM_036810__ 798 GACCATCTTTACAAAGGCCGGACTCGGCACTTCGGCGTCCGTTCTCGGCA 847
BSNT_06112 524 CAATGGGAATCGGCGTCCTTAACGTCATCATGTGTATCACTGCCATGATT 573
|.|||||.|||||.|||.|.||||||||||||||||||||.||||||||.
RBAM_036810__ 848 CGATGGGCATCGGTGTCTTAAACGTCATCATGTGTATCACCGCCATGATC 897
BSNT_06112 574 TTAATTGACCGTGTCGGCCGCAAAAAACTTCTGATCTGGGGAAGTGTCGG 623
|||||.|||||..|||||||.||||||||.|||||.||||||||.|||||
RBAM_036810__ 898 TTAATCGACCGGATCGGCCGGAAAAAACTGCTGATGTGGGGAAGCGTCGG 947
BSNT_06112 624 CATCACACTGAGCCTTGCTGCTTTATCAGGCGTGCTCCTGACACTG---G 670
|||.||..|||||||.||..|..||||||.|.|.||||| .||| |
RBAM_036810__ 948 CATTACCTTGAGCCTGGCGTCACTATCAGCCATTCTCCT---TCTGGCCG 994
BSNT_06112 671 GGCTTTCCGCTTCAACAGCGTGGATGACAGTAGTCTTTCTAGGTGTCTAT 720
|.||.||.|||||||||||.|||.||||.||..|.|||||.||..|||||
RBAM_036810__ 995 GCCTGTCAGCTTCAACAGCATGGCTGACCGTGCTGTTTCTCGGCATCTAT 1044
BSNT_06112 721 ATCGTCTTTTACCAGGCGACATGGGGTCCGGTAGTGTGGGTGCTCATGCC 770
||||||||.|||||||||||.||||||||.||.||.|||||.||.|||||
RBAM_036810__ 1045 ATCGTCTTCTACCAGGCGACCTGGGGTCCCGTCGTATGGGTTCTGATGCC 1094
BSNT_06112 771 TGAGCTCTTCCCATCCAAAGCACGCGGAGCCGCGACAGGGTTCACGACTT 820
.|||||.|||||.||.||.||||||||||||||.||.||.||.|||||.|
RBAM_036810__ 1095 GGAGCTGTTCCCGTCAAACGCACGCGGAGCCGCAACCGGATTTACGACAT 1144
BSNT_06112 821 TGGTGTTATCGGCGGCTAACCTGATCGTGTCGCTTGTCTTCCCGCTGATG 870
||.|..|.|||||..|.|||||||||||.||.||.||.||||||||.|||
RBAM_036810__ 1145 TGATTCTGTCGGCAACCAACCTGATCGTTTCACTGGTATTCCCGCTTATG 1194
BSNT_06112 871 CTAAGCGCGATGGGCATCGCATGGGTCTTTATGG--TTTTCTCAGTCATT 918
||.|||||.||||||||||..|||||.|| .|| |.||||||||||||
RBAM_036810__ 1195 CTGAGCGCTATGGGCATCGGCTGGGTATT--CGGAATATTCTCAGTCATT 1242
BSNT_06112 919 TGTCTTCTCTCATTTTTCTTCGCGTTC------TACATGGTACCGGAAAC 962
|| .|||||||.||||||| ||| |||||.||.||.|||||
RBAM_036810__ 1243 TG---CCTCTCATCTTTCTTC---TTCGCCGCTTACATCGTTCCTGAAAC 1286
BSNT_06112 963 CAAAGGGAAAAGCTTGGAGGAAATTGAA--GCAAGCCTGAAAAAACGGT- 1009
.||.||.|.|||.||.||.|||||.||| ||| |.||||||||||||
RBAM_036810__ 1287 GAAGGGCAGAAGTTTAGAAGAAATCGAAACGCA--CTTGAAAAAACGGTT 1334
BSNT_06112 1010 ----TTAAAAAGAAGAAAAGCACCCAAAACCAAGTGCTGAATGAGCGTAC 1055
|||||| |||...||||..|||||.|||.|.||.||..||||.||
RBAM_036810__ 1335 CTCCTTAAAA--AAGCGCAGCAAACAAAATCAAATTCTTAAACAGCGCAC 1382
BSNT_06112 1056 TTTATAA 1062
..|.|||
RBAM_036810__ 1383 ACTGTAA 1389
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