Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06041 and RBAM_036450
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:32
# Commandline: needle
# -asequence dna-align/BSNT_06041.1.9828.seq
# -bsequence dna-align/RBAM_036450___hutM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06041-RBAM_036450___hutM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06041-RBAM_036450___hutM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06041
# 2: RBAM_036450___hutM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1452
# Identity: 680/1452 (46.8%)
# Similarity: 680/1452 (46.8%)
# Gaps: 582/1452 (40.1%)
# Score: 2464.5
#
#
#=======================================
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 1 ATGGATGTTGATCAAGGCGGCAATCAACTAAAGCGCACGATGAAAAGCAG 50
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 51 GCACTTATTTATGATTTCATTGGGAGGAGTCATCGGCACGGGGCTGTTTT 100
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 101 TGAGCACAGGGTATACATTGAGCCAGGCCGGGCCGGGCGGGACGATCGCC 150
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 151 GCTTACCTGATCGGCGGCTTGATGATGTATCTTGTCATGCAGTGTCTCGG 200
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 201 AGAATTGTCAGTAGCCATGCCTGTGACCGGTTCATTTCAAACGTATGCGA 250
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 251 CAACGTTTATCGGGCCGTCCACGGGTTTTATGGTCGGTATCATGTATTGG 300
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 301 GTGAATTGGGTGGTGACGGTAGGATCGGAGTTTACAGCTTCCGGTATCCT 350
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 351 CATGCAGCGCTGGTTTCCCCACAGCAGCGTCTGGATGTGGAGCGCGATTT 400
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 401 TCGCGGCTCTCCTTTTTGCCGCCAATGCATTCTCCGTTAAATTGTTTGCA 450
BSNT_06041 0 -------------------------------------------------- 0
RBAM_036450__ 451 GAAACAGAGTTTTGGTTTTCCAGCGTCAAAATCGTTACCATCCTTTTATT 500
BSNT_06041 1 ----------------------ATGTTTGGCCTGATCTCTTTAAACGGAA 28
|||||.||..||||.||.||..||||..
RBAM_036450__ 501 TATCATCTTAGGCGGCGCCGCGATGTTCGGTTTGATTTCATTGCACGGTT 550
BSNT_06041 29 CGGCGGATGCTCCTATGCTGTCAAACTTCACGGACCACGGCGGGCTGTTT 78
|||..||.|||||.||||||||.||.|||||....||||||||.||||||
RBAM_036450__ 551 CGGGTGAAGCTCCGATGCTGTCGAATTTCACCTCGCACGGCGGACTGTTT 600
BSNT_06041 79 CCGAATGGCTTTCTCGCCGTTTTTATCGCGATGATATCTGTGAGTTTCGC 128
|||||.||||||||.||.|||||.||.||.|||||.||.||.||.||.||
RBAM_036450__ 601 CCGAACGGCTTTCTTGCGGTTTTCATTGCAATGATTTCCGTAAGCTTTGC 650
BSNT_06041 129 CTTTTCTGGTACAGAGTTAATCGGCGTTACAGCAGGAGAATCAGCAAATC 178
||||||.||.||.|||.|.|||||..|||||||.||.|||.|.||.||||
RBAM_036450__ 651 CTTTTCAGGGACGGAGCTGATCGGAATTACAGCGGGTGAAACCGCCAATC 700
BSNT_06041 179 C-TCAAAAGGATATACCGCGATCCATCCGTAATGTCGCATGGAGAACCGT 227
| .||||| |||||.|||||.||.|||||.||||||||.||||||||.||
RBAM_036450__ 701 CGGCAAAA-GATATTCCGCGTTCGATCCGGAATGTCGCCTGGAGAACGGT 749
BSNT_06041 228 TATTTTTTTCATTGGCGCTGTCTTCATATTATCCGGGTTGATTTCGTGGA 277
|||.|||||.||.|||||..|.||..|..|.|||||..||||.||.||||
RBAM_036450__ 750 TATCTTTTTTATCGGCGCCATTTTTGTGCTGTCCGGACTGATCTCCTGGA 799
BSNT_06041 278 AGGACGCAGGCGTGATTGAAAGCCCGTTTGTAGCCGTATTTGCGGAGATC 327
||||.||.||.|||||||||||.||||||||.||.||.|||.|..|.|||
RBAM_036450__ 800 AGGAAGCCGGTGTGATTGAAAGTCCGTTTGTCGCGGTCTTTTCCCAAATC 849
BSNT_06041 328 GGAATCCCTTACGCTGCTGATATTATGAATTTCGTGATATTAACAGCCTT 377
||.|||||.|||||.||.|||||.||||||||||||||.|||||.||.||
RBAM_036450__ 850 GGTATCCCATACGCCGCCGATATCATGAATTTCGTGATTTTAACGGCTTT 899
BSNT_06041 378 GCTGTCTGTCGCCAACTCAGGCTTATATGCTTCGACCCGTATGATGTGGT 427
|||.||.|||||||||||.||..|.||||||||.|||||.|||.||||||
RBAM_036450__ 900 GCTTTCGGTCGCCAACTCCGGACTGTATGCTTCCACCCGGATGCTGTGGT 949
BSNT_06041 428 CGTTAGCAAATGAAAACATGATCAGTTCCCGTTTTAAGAAAGTGACCTCT 477
|..|.||.|||||||||||||||||..||||.||.||.|||||.||..|.
RBAM_036450__ 950 CTCTTGCGAATGAAAACATGATCAGCGCCCGGTTCAAAAAAGTCACGCCG 999
BSNT_06041 478 AAAGGCATTCCTTTAAATGC-CTTAATGAT---CAGTATGGCTGTATCTT 523
|||||||||||..|.||||| | ||.| |||.|||||.||.||.|
RBAM_036450__ 1000 AAAGGCATTCCGCTGAATGCTC----TGCTCGCCAGCATGGCCGTTTCCT 1045
BSNT_06041 524 GTTTATCTCTCG-TTTCCAGTATCGTGGCCCCTGGAACTGTCTATGTGGT 572
|..|||| ||.| |.||.||.||||..|||||.||.||.|||||.|||||
RBAM_036450__ 1046 GCATATC-CTTGATCTCAAGCATCGCCGCCCCGGGCACGGTCTACGTGGT 1094
BSNT_06041 573 GATGGTCGCAATTGCTGGATTTGCAGGAGTCGTGGTCTGGATGAGCATTG 622
|.|.||.|||||.||.||||||||.||.||||||||.|||||||||||.|
RBAM_036450__ 1095 GCTTGTGGCAATAGCCGGATTTGCCGGCGTCGTGGTGTGGATGAGCATCG 1144
BSNT_06041 623 CCTTGTCCCAGCTCTTGTTTCGAAAGAGATT-TCTGAAAAAAGGGGGGAA 671
||.||||.|||||.||.|||||||| |.||| |.|||||||.||.||...
RBAM_036450__ 1145 CCCTGTCTCAGCTGTTATTTCGAAA-ACATTATGTGAAAAACGGCGGACG 1193
BSNT_06041 672 TGTAAAAGATCTGACATTTCGCACGCCGCTTTATCCTCTTATGCCTATAG 721
.||....||||||||.||.|||||.|||.|.||.|||||..|.||.||.|
RBAM_036450__ 1194 CGTCTCGGATCTGACCTTCCGCACACCGTTATACCCTCTCGTTCCGATCG 1243
BSNT_06041 722 CCGCTCTCTTATTATGTTCTGCTTCTTGTATCGGTCTTGCTTTTGATCCC 771
|||||.|..|.|||||||..|||||.||..|.||.|||||.|||||||||
RBAM_036450__ 1244 CCGCTGTGATCTTATGTTTCGCTTCATGCGTAGGCCTTGCATTTGATCCC 1293
BSNT_06041 772 AATCAAAGAATCGCACTTTTCTGCGGAGTTCCTTGTATCATCCTTTGCTA 821
||||||||||||||.||.|||||||||.||||||||||.|||||.|||||
RBAM_036450__ 1294 AATCAAAGAATCGCCCTCTTCTGCGGAATTCCTTGTATGATCCTGTGCTA 1343
BSNT_06041 822 TCTCATCTACCATTTCAAAAGAAATGTTACAAAAGCGAAAAAAATCAGCC 871
|||||| .|.|||....||||| |||| |||||
RBAM_036450__ 1344 TCTCAT---TCGTTTTTTGAGAAA------------GAAA-----CAGCC 1373
BSNT_06041 872 AAGAGGAA--TATCCGGCCGATCACATCC-----TATAA----------- 903
||| .|||||.||| |.||||.| .||||
RBAM_036450__ 1374 -----GAAACAATCCGTCCG-TGACATTCATTTGGATAAAACCATGCCAT 1417
BSNT_06041 903 -- 903
RBAM_036450__ 1418 AA 1419
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