Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06038 and RBAM_036390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:31
# Commandline: needle
# -asequence dna-align/BSNT_06038___yxiA.1.9828.seq
# -bsequence dna-align/RBAM_036390___yxiA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06038___yxiA-RBAM_036390___yxiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06038___yxiA-RBAM_036390___yxiA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06038___yxiA
# 2: RBAM_036390___yxiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1480
# Identity: 1025/1480 (69.3%)
# Similarity: 1025/1480 (69.3%)
# Gaps: 179/1480 (12.1%)
# Score: 3654.0
#
#
#=======================================
BSNT_06038___ 1 ---------------------------------------------ATGGC 5
||.|.
RBAM_036390__ 1 ATGAAAACCAGTTTCTTTCGTGTGTGCCTGGTCTCAGCAGCGGTCATCGG 50
BSNT_06038___ 6 CTTCACCCTCCCAAACTACGTCTATGCA--CAAAAACCTA--------TA 45
.|||||.||.|| ||| |||||.||.| |.
RBAM_036390__ 51 GTTCACTCTGCC-------------GCAGGCAAAAGCCCAGCATCCGGTT 87
BSNT_06038___ 46 TTTAAAGAAGTCAGCGTCCATGACCCTTCCATCATTGAAACAAACGGCAC 95
|||..|||.||||||||.|||||.||.|||.||||..|||||..||..||
RBAM_036390__ 88 TTTTCAGAGGTCAGCGTGCATGATCCGTCCGTCATCAAAACAGGCGATAC 137
BSNT_06038___ 96 CTTTTATGTTTTTGGATCTCATCTCGCTTCCGCAAAAACAAATGACCTCA 145
.|.||||||.||.||.||.|||.|.||||||||.||..|.||..||||.|
RBAM_036390__ 138 ATATTATGTATTCGGCTCGCATTTGGCTTCCGCCAAGTCGAAAAACCTGA 187
BSNT_06038___ 146 TGCAATGGCAGCAGCTGAC--CAACAGCGTAAGCAA---CGACAACCCAC 190
||||.|||||||||.||.| || ||||| ||| |.|.||.||.|
RBAM_036390__ 188 TGCAGTGGCAGCAGATGTCTTCA--AGCGT---CAATCCCAATAATCCCC 232
BSNT_06038___ 191 TTATCCCGAATGTCTATAAAGAATTAAAAGAAACCTTCGAATGGGCGCAA 240
|.||||||||.|||||.|..|||||||||||.||.|||||.|||||.||.
RBAM_036390__ 233 TGATCCCGAACGTCTACACCGAATTAAAAGAGACATTCGACTGGGCCCAG 282
BSNT_06038___ 241 TCCGATACTCTTTGGGCGGCTGACGTCACGCAGCTGGCGGACGGCAAATA 290
||.|||||.||.||||||.|.||||||.|.||||||.|.|||||.|||||
RBAM_036390__ 283 TCTGATACGCTGTGGGCGCCGGACGTCGCCCAGCTGTCTGACGGGAAATA 332
BSNT_06038___ 291 CTACATGTACTACAACGCCTGCCGCGGCGACTCGCCTAGGTCCGCCATGG 340
.|||||||||||.||||||||....||.||||||||..|.|||||..|.|
RBAM_036390__ 333 TTACATGTACTATAACGCCTGTAAAGGAGACTCGCCGCGATCCGCTCTCG 382
BSNT_06038___ 341 GTGTTGCCGTCGCTGACAACATCGAAGGGCCATACAAAAACAAAGGCATC 390
||||.|||||...||||||.||||||||.||.||||||||||||||.|||
RBAM_036390__ 383 GTGTCGCCGTGAGTGACAAAATCGAAGGACCCTACAAAAACAAAGGTATC 432
BSNT_06038___ 391 TTTTTGAAATCAGGAATGGAAGGCACAAGCAACGATGGAACACCGTATGA 440
|||||||||||.||.||||||||.|.||||.|.||.||.||..|||||.|
RBAM_036390__ 433 TTTTTGAAATCGGGCATGGAAGGAAAAAGCGAAGACGGCACGACGTATAA 482
BSNT_06038___ 441 CGCAACAAAA----CATCCGAATGTCGTCGACCCGCATACCTTCTTTGAT 486
.|| ||| ||.|||||.|||||.||.|||||.||.||.|||||.
RBAM_036390__ 483 TGC----AAACGTTCACCCGAACGTCGTAGATCCGCAAACGTTTTTTGAC 528
BSNT_06038___ 487 AAAGACGGCAAGCTGTGGATGGTGTATGGATCATACTCAGGCGGCATTTT 536
.|..|.||||||||.|||||||||||.||.||.|||||.|||||.|||||
RBAM_036390__ 529 CACAAAGGCAAGCTCTGGATGGTGTACGGCTCTTACTCCGGCGGGATTTT 578
BSNT_06038___ 537 CATACTTGAAATGAATCCGAAAACGGGCTTCCCGCTTCCTGGA--CAGGG 584
||||||.|||||||||||||||||.||.||||||||.|| || ||.||
RBAM_036390__ 579 CATACTGGAAATGAATCCGAAAACCGGTTTCCCGCTCCC--GAACCAAGG 626
BSNT_06038___ 585 ATACGGGAAAAAACTGCTTGGCGGCAACCATAGCAGAATCGAAGGCCCGT 634
.|||||.|||||||||||.|||||.||.||.|||||||||||||||||||
RBAM_036390__ 627 CTACGGAAAAAAACTGCTCGGCGGAAATCACAGCAGAATCGAAGGCCCGT 676
BSNT_06038___ 635 ATGTTCTCTACAATCCAGACACCCAATACTACTACTTATACCTATCATAT 684
|..|...|||||||||.||.||..||||.|||||..|.||.||.||||..
RBAM_036390__ 677 ACATCAGCTACAATCCGGAAACGAAATATTACTATCTGTATCTGTCATTC 726
BSNT_06038___ 685 GGCGGTCTTGATGCAACAGGCGGCTATAACATCCGTGTGGCCCGCTCCAA 734
|||||.|||||.|||.|.|||||.|||.|.||.||||||||.|||||.||
RBAM_036390__ 727 GGCGGACTTGACGCAGCCGGCGGTTATCATATGCGTGTGGCGCGCTCTAA 776
BSNT_06038___ 735 GAAACCAGACGGCCCTTATTATGATGCAGAAGGCAATCCAATGCTTGATG 784
.||.||.|||||.||.||.|||||.||.|.||||.||...||||||||||
RBAM_036390__ 777 AAATCCGGACGGTCCGTACTATGACGCCGCAGGCCATAACATGCTTGATG 826
BSNT_06038___ 785 TCCGCGGCAAAGAAGGCACATTCTTCGACGACCGTTCCATCGAATCATAC 834
.|...||.|||||.||||..|||||.||||||....|.||.|||.|.|||
RBAM_036390__ 827 CCAAAGGAAAAGACGGCAGTTTCTTTGACGACAAAGCAATTGAACCGTAC 876
BSNT_06038___ 835 GGCGTCAAACTCATGGGCAGCTACACTTTTGAAACAGAAAATGAAAAAGG 884
||.|||||||||||||||.||||||..||.|...||.||..|||||||||
RBAM_036390__ 877 GGGGTCAAACTCATGGGCGGCTACAGCTTCGCCTCACAATCTGAAAAAGG 926
BSNT_06038___ 885 CACCGGGTACGTCTCACCAGGCCACAACTCCGCATACTATGACGAAAAAA 934
|||.||.|||||.||.||.||.||||||||||..|..||.||||..||||
RBAM_036390__ 927 CACGGGCTACGTATCGCCGGGACACAACTCCGTGTTTTACGACGGGAAAA 976
BSNT_06038___ 935 CCGGGCGTTCCTATTTAATCTTCCACACCCGCTTCCCGGGCAGGGGTGAG 984
|....||.||.||..|.||.|||||||||||.||||||..|||.||.||.
RBAM_036390__ 977 CGAAACGATCATACCTCATTTTCCACACCCGTTTCCCGAACAGAGGCGAA 1026
BSNT_06038___ 985 GAACACGAAGTCAGAGTCCACCAATTGTTCATGAATAAAGACGGCTGGCC 1034
||.||||||||||||||.||.||..|||.||||||.||||||||.|||||
RBAM_036390__ 1027 GAGCACGAAGTCAGAGTGCATCAGCTGTACATGAACAAAGACGGATGGCC 1076
BSNT_06038___ 1035 GGTAGCAGCGCCATATCGTTACGCAGGTGAA------ACACTGAAAGAAG 1078
.||.|||||||||||.||.||.||.||.||| ||||
RBAM_036390__ 1077 CGTTGCAGCGCCATACCGCTATGCGGGAGAACCGGATACAC--------- 1117
BSNT_06038___ 1079 TAAAACAAAAAGACAT--------------CA-CAGGAACATACAAACTC 1113
|||| || |.|||.|.|||||||||
RBAM_036390__ 1118 ------------ACATTCCGGCGGCCGCCGCATCCGGAGCCTACAAACTC 1155
BSNT_06038___ 1114 ATCCAGCACGGAAAAGACATCTCAGC--CGACATCAAAAAAACCATCAAC 1161
|||||||||||||||||||||.|||| || ||||||||..|.|..|||
RBAM_036390__ 1156 ATCCAGCACGGAAAAGACATCACAGCTACG--ATCAAAAACCCAAAAAAC 1203
BSNT_06038___ 1162 ATCCAGCTCAACAAAAACCACACCATTTCCGGGGAAATGACCGGAACATG 1211
||||||||.|||||..||..|||||||||||||||||||||||||||.||
RBAM_036390__ 1204 ATCCAGCTTAACAACGACGGCACCATTTCCGGGGAAATGACCGGAACCTG 1253
BSNT_06038___ 1212 GCAGAAAACCGGA-AAAAACACAG-CCGACATCACGTTAGCGGGCA-AGA 1258
| |.||||.|||| |..|.||.|| ||||..|.||.|.|.| |||| |.|
RBAM_036390__ 1254 G-ACAAAAACGGACAGCAGCAAAGCCCGAATTAACCTGAAC-GGCACAAA 1301
BSNT_06038___ 1259 CGTATAACGGGGTATTTTTACGCC------AGTGGGATTCGGTGAGAGAG 1302
| |||.||||.||.|| || |.|||||.||.|.|||||||
RBAM_036390__ 1302 C-TATGACGGCGTCTT------CCTGAAAGAATGGGACTCAGCGAGAGAG 1344
BSNT_06038___ 1303 -AAGAACGTCATGACGTTTAGTGTGTTGAATGGCAGCGGT------GAGG 1345
||||| ||..||||||||||||||.|| |||||| ||||
RBAM_036390__ 1345 AAAGAA-GTTGTGACGTTTAGTGTGCTG------AGCGGTGATGGGGAGG 1387
BSNT_06038___ 1346 CTGTTTGGGGTAGT-AAGCTTAAAAGATAA 1374
|||||||||| ||| ||| |.|
RBAM_036390__ 1388 CTGTTTGGGG-AGTGAAG-TGA-------- 1407
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