Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_06023 and RBAM_036340

See Amino acid alignment / Visit BSNT_06023 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:30
# Commandline: needle
#    -asequence dna-align/BSNT_06023___yxiE.1.9828.seq
#    -bsequence dna-align/RBAM_036340___yxiE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06023___yxiE-RBAM_036340___yxiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06023___yxiE-RBAM_036340___yxiE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06023___yxiE
# 2: RBAM_036340___yxiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity:     325/463 (70.2%)
# Similarity:   325/463 (70.2%)
# Gaps:          32/463 ( 6.9%)
# Score: 1071.0
# 
#
#=======================================

BSNT_06023___      1 ATGTTTAACAAAATGTTAGTAGCGATTGACGGATCAGACATGAGTGCA--     48
                     ||||||||.|||||..|.|.|||..|.|||||.||||||||||  |||  
RBAM_036340__      1 ATGTTTAAAAAAATTCTTGCAGCAGTAGACGGTTCAGACATGA--GCAAT     48

BSNT_06023___     49 AAAGCGCTTGATGCCGCAGTGCATTTGGCAAAAGAGCAACAAGCGGAACT     98
                     |||||.||.||.||.||..|.|||.||||.|||||.||.||.||.|||||
RBAM_036340__     49 AAAGCCCTGGACGCAGCGATCCATCTGGCGAAAGAACAGCAGGCTGAACT     98

BSNT_06023___     99 AAGCATTCTTCATGTGGGGAGAGAAGCCGTCGTCACGACTTCTTCTCTGA    148
                     .|.||||||..|||.|||..|.||||||||.|||.|.||.||..||.|.|
RBAM_036340__     99 CACCATTCTCTATGCGGGACGTGAAGCCGTTGTCTCCACATCAGCTTTAA    148

BSNT_06023___    149 CGGGAATTGTCTATGTGCCTGAACACTTTATTGATGAAATCAGGAAC--G    196
                     |.||.|||||||||||.||.|||.||||.|||||.||.||||  |||  |
RBAM_036340__    149 CCGGGATTGTCTATGTTCCGGAAAACTTCATTGAAGACATCA--AACATG    196

BSNT_06023___    197 AGGT----TAAAAAAGAG-GGCCTGAAAATCCTTGAAAATGCAAAAGAAA    241
                     |.||    .|||||.||| ||||     ||.||.|||.||||.||..|.|
RBAM_036340__    197 AAGTCGAGCAAAAAGGAGCGGCC-----ATTCTGGAAGATGCCAAGCAGA    241

BSNT_06023___    242 AAGCAGCCGAAAAAGGCGTTCAAGCTGAAACCATTTACG-CGAATGGCGA    290
                     ||||.||.||||..||.||..|.||.||||.|.|.|||| |.|| |||||
RBAM_036340__    242 AAGCGGCTGAAAGCGGAGTAAACGCGGAAAGCCTGTACGTCCAA-GGCGA    290

BSNT_06023___    291 GCCGGCGCATGAGATACTAAATCACGCAAAAGAGAAAG----GC--GTCA    334
                     .||.||||||.|.||..||||      .|.||.|||||    ||  .|||
RBAM_036340__    291 ACCTGCGCATCAAATTTTAAA------CATAGCGAAAGAACAGCATTTCA    334

BSNT_06023___    335 GCCTGATTGTAGTTGGCAGCCGGGGGATCAGCGGCCTGAAAGAAATGATG    384
                     ..||||||||.||.||.|||||.||.||||||||..|.||||||||||||
RBAM_036340__    335 ATCTGATTGTCGTCGGAAGCCGCGGAATCAGCGGATTTAAAGAAATGATG    384

BSNT_06023___    385 CTTGGAAGCGTCAGCCATAAAGTGTCTCAATTATCAACATGCCCGGTTTT    434
                     ||.||||||||.||||||||.||.||.|||||.||..|.||.||.||..|
RBAM_036340__    385 CTCGGAAGCGTGAGCCATAAGGTCTCACAATTGTCTCCTTGTCCTGTACT    434

BSNT_06023___    435 GATTGTTCGATAG    447
                     |||.||||..||.
RBAM_036340__    435 GATCGTTCATTAA    447


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.