Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06020 and RBAM_036330

See Amino acid alignment / Visit BSNT_06020 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:30
# Commandline: needle
#    -asequence dna-align/BSNT_06020___yxxF.1.9828.seq
#    -bsequence dna-align/RBAM_036330___yxxF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06020___yxxF-RBAM_036330___yxxF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06020___yxxF-RBAM_036330___yxxF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06020___yxxF
# 2: RBAM_036330___yxxF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 957
# Identity:     679/957 (71.0%)
# Similarity:   679/957 (71.0%)
# Gaps:          63/957 ( 6.6%)
# Score: 2445.5
# 
#
#=======================================

BSNT_06020___      1 TTGATGCAGCAAGATCTCTCAATCACACCAAAACAAAAATCAACAGCCGT     50
                        |||||                  |.|..||||||.|||||..|||||
RBAM_036330__      1 ---ATGCA------------------AGCTGAACAAACATCAAATGCCGT     29

BSNT_06020___     51 AATCAAAATGGTCATCTCCATGGTGATTTTCGGTTCTATCGGCTTTTTCT    100
                     .||||||||||||||.||||||||.||||||||.||.|||||||||||||
RBAM_036330__     30 CATCAAAATGGTCATTTCCATGGTCATTTTCGGATCAATCGGCTTTTTCT     79

BSNT_06020___    101 CAGAGCATACCAATCTGCCGTCATTTGAATTGGTCTTTGTCCGCTGCCTT    150
                     ||||.|||||.|||.||||.|||.|||||.||||||||||..|.||.||.
RBAM_036330__     80 CAGAACATACGAATGTGCCTTCAATTGAACTGGTCTTTGTGAGATGTCTG    129

BSNT_06020___    151 TGCGCGACGCTGTTTTTAGGCCTTTGCTGGCTGGCGTCCGGCCAGTATAA    200
                     |||||..|..|||||.|.|||.||||||||.|.|..|||||.|.|||...
RBAM_036330__    130 TGCGCCTCATTGTTTCTGGGCGTTTGCTGGTTTGGTTCCGGACGGTACCG    179

BSNT_06020___    201 AACTGAAAAATGGAGCAAGAGAGACGTGCTGCAAACATTGGCGTGCGGTT    250
                     .||.|||.||||||.|..|.|.||.||||||||.|||.||||.|||||.|
RBAM_036330__    180 CACCGAACAATGGAACCGGCGGGAGGTGCTGCAGACACTGGCCTGCGGAT    229

BSNT_06020___    251 TCTTTCTTGTATTCAACTGGGTGTTCTTATTTAAGTCTTTTGAAGAAACG    300
                     |.|||||.||..|.|||||||||||.||||||||.||.|||||.||.||.
RBAM_036330__    230 TTTTTCTCGTGCTGAACTGGGTGTTTTTATTTAAATCGTTTGAGGAGACA    279

BSNT_06020___    301 TCCGTTACAATTGCCATCTCCGTTTATCACCTAGCGCCGGTGCTTGTTCT    350
                     ||.||.||.||.||.||.|||||||||||.||.||.|||||.||.||.||
RBAM_036330__    280 TCAGTGACGATAGCGATTTCCGTTTATCATCTGGCTCCGGTTCTCGTCCT    329

BSNT_06020___    351 TCTTCTGGGGAGTTTCCTCTACAGAGAGAAATTAAATGTGATCTCCGTCA    400
                     ||||||||||||..|..|.|||.|.||||||.|..||.||.|.|||||||
RBAM_036330__    330 TCTTCTGGGGAGCCTTATATACCGGGAGAAACTGCATATGGTGTCCGTCA    379

BSNT_06020___    401 GCTCCATTATCATCTGCTTTCTGGGAACTGCGCTGATTTCCGGGATTAAC    450
                     ..|||||..|.||.||.||||||||.||.||.|||||||||||.||.|||
RBAM_036330__    380 CTTCCATCGTAATTTGTTTTCTGGGCACCGCCCTGATTTCCGGCATCAAC    429

BSNT_06020___    451 GGCAGCACTTCATTGACACAGCTGATGGGATCAGGGATCATATGGGCAGT    500
                     ||.||.||.|||||..|.||||||||||||||.||.||.||.|||||.||
RBAM_036330__    430 GGAAGTACATCATTTTCTCAGCTGATGGGATCGGGTATTATTTGGGCCGT    479

BSNT_06020___    501 TCTCGCCGCACTGTTTTATGCGTTCACCACTTTATTG---GGAAAAGGCA    547
                     .||.|||||.||.||||||||.||.||.||   |.||   ||.|||||||
RBAM_036330__    480 GCTGGCCGCTCTTTTTTATGCTTTTACGAC---ACTGGCCGGGAAAGGCA    526

BSNT_06020___    548 TTCACAATCTCAGTCCTTACACGACCACCTTCTTGCAGACGGGTTTAGGG    597
                     |..|||..|||||.||.|||.|...|||||..||||||||.||.||.||.
RBAM_036330__    527 TCAACAGCCTCAGCCCATACGCCGTCACCTGTTTGCAGACCGGATTGGGC    576

BSNT_06020___    598 GTTATCATCCTGATTCCGTTTATTCACTTTGGCGCTTTTGCTGACCTATC    647
                     ||||||||.||..|||||||..|.|..||.|||||||||.||||..|.||
RBAM_036330__    577 GTTATCATTCTTCTTCCGTTCGTCCGTTTCGGCGCTTTTTCTGATTTGTC    626

BSNT_06020___    648 TCAGGGAAACTGGATTATGGTGGTATCTACCGGCATCATCCATACGGGTA    697
                     .||.|..||||||||.|||.|.||.||.|||||.||||||||||||||.|
RBAM_036330__    627 GCATGTGAACTGGATCATGATTGTGTCGACCGGTATCATCCATACGGGAA    676

BSNT_06020___    698 TTGTATATTTGTTGTTTTTTGACAGTTTGCGAATTTTATCAACGAAATTT    747
                     ||||.||||||.|.|||||||||||.|||||..|||||||.||....|||
RBAM_036330__    677 TTGTGTATTTGCTCTTTTTTGACAGCTTGCGGTTTTTATCCACCCGGTTT    726

BSNT_06020___    748 ATTTCAATCATTGTATTTCTCGACCCCGCTGTCGCGATCGTGCTCGATAC    797
                     |||||||||||.||||||||.||.||.||.||.|||||.|||||.||.||
RBAM_036330__    727 ATTTCAATCATCGTATTTCTTGATCCGGCGGTGGCGATTGTGCTTGACAC    776

BSNT_06020___    798 CGTCTTCACAGGCTTCCGCCCTGACCTCTATCAAACGCTTGGCATCGTGC    847
                     |||.||.||.||.||.|||||.|||||.||||||.|..|.||.||.||..
RBAM_036330__    777 CGTATTTACGGGATTTCGCCCCGACCTTTATCAATCTTTGGGGATTGTAT    826

BSNT_06020___    848 TGATCTTTGCGGGCATGGCCTTGACGCTTGTCAGGAGGCA----------    887
                     ||||.||||||||.|||||..||.|.||..|..|.|.|||          
RBAM_036330__    827 TGATTTTTGCGGGAATGGCGCTGTCTCTGATTCGAAAGCAAAAAGCCGTG    876

BSNT_06020___    888 ---GGGGAAGGCGAATGTGGCAGCTGAGGGTA--CGGATATTGAACAAAT    932
                        |.||||    |.|..||||   ||..|.|  ||.||||.|       
RBAM_036330__    877 CCGGCGGAA----ACTCAGGCA---GACAGCACCCGTATATAG-------    912

BSNT_06020___    933 GCAATAA    939
                            
RBAM_036330__    912 -------    912


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06020 and RBAM_036330

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
