Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05993 and RBAM_036240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:30
# Commandline: needle
# -asequence dna-align/BSNT_05993.1.9828.seq
# -bsequence dna-align/RBAM_036240.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05993-RBAM_036240.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05993-RBAM_036240.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05993
# 2: RBAM_036240
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 385
# Identity: 182/385 (47.3%)
# Similarity: 182/385 (47.3%)
# Gaps: 149/385 (38.7%)
# Score: 464.5
#
#
#=======================================
BSNT_05993 1 ------------------TTGTTTC---AGCATATCAAGAAAT-GGCGTT 28
.||.||| |||.|.| ||||.| .||.||
RBAM_036240 1 ATGAAAAAGAATAAGTGGCTGATTCAAGAGCTTTT--AGAATTCCGCCTT 48
BSNT_05993 29 TTTATCGAGAAACAGATCACGTGCTTGGTGCCATTTATACGATTGAGTTA 78
|| .||.|||..||| .||||.|...||||||||
RBAM_036240 49 TT--CCGGGAACGAGA---------------GATTTCTGTAATTGAGTT- 80
BSNT_05993 79 GCAGCTGTTTATCATTCACGTACGA------------TTGTT-----GTC 111
|.||||| ||.|||..|||.|| ||||| .||
RBAM_036240 81 ---GGTGTTT-TCCTTCGAGTATGAACATCAGCTCATTTGTTTGAGGCTC 126
BSNT_05993 112 ATATTCAAAGACGTTTCAGTCGTTACGATACGAGATATGGAGACCCTAAC 161
||||.||||||||||||...||||...|||..|||.|||||||
RBAM_036240 127 ATATGCAAAGACGTTTCTTCCGTTCAAATAAAAGAAATGGAGA------- 169
BSNT_05993 162 GGACCTGTCTGATGGACTTCTCCA--TATTGAAACGCAA-----CC---- 200
|.|.|| |||.||| |.|| .||||.|| ||| ||
RBAM_036240 170 -GTCATG-CTGCTGG-----TTCAGGCATTGTAA--CAATTGATCCTGCT 210
BSNT_05993 201 -----------------ACAAGGTATGTACCTTGTGGAAGAATGGGAGGA 233
||| |.|| |..||.|||||.||.||||||.|
RBAM_036240 211 GCTGACGGAGATGAGGGACA--GCAT-TTTCTCGTGGAGGAGTGGGAGAA 257
BSNT_05993 234 GCAGACATTCCGCTTTTGTTGCCGGCAATATGAGGTGATGGAAGTTGAAT 283
.||.||.||||||||||.||||||.|||||||| .|.||.||||.
RBAM_036240 258 CCAAACGTTCCGCTTTTATTGCCGTCAATATGA------AGCAGCTGAAA 301
BSNT_05993 284 AG--------------------------------- 285
||
RBAM_036240 302 AGAAGGAGGCACAAAATGGAACGGCACAAACATGA 336
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