Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05986 and RBAM_036210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:29
# Commandline: needle
# -asequence dna-align/BSNT_05986___yxiO.1.9828.seq
# -bsequence dna-align/RBAM_036210___yxiO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05986___yxiO-RBAM_036210___yxiO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05986___yxiO-RBAM_036210___yxiO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05986___yxiO
# 2: RBAM_036210___yxiO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1338
# Identity: 931/1338 (69.6%)
# Similarity: 931/1338 (69.6%)
# Gaps: 105/1338 ( 7.8%)
# Score: 3283.0
#
#
#=======================================
BSNT_05986___ 1 ---------------------------------ATGATGAAACGTTTTAC 17
.||||||||||.|||.|
RBAM_036210__ 1 ATGCAGAGAACCGGTTTTTGGGAAGGAGCGTGTGTGATGAAACGGTTTTC 50
BSNT_05986___ 18 GAAACAAGAAAACAGCTGGGTATTATATGACTGGGCAAATTCTGCTTACT 67
||||.||||||.|||||||.|..|.|||||.|||||.|||||.|||||.|
RBAM_036210__ 51 GAAAGAAGAAAGCAGCTGGATGCTGTATGATTGGGCCAATTCAGCTTATT 100
BSNT_05986___ 68 C---AATTGTCGTGACCACCGCGGTATTTCCGTTATTTTATAAATCAGCA 114
| .|||.|..|| ||.||||||||.||.||.||||.||||.|.||.
RBAM_036210__ 101 CGGTCATTATTATG---ACGGCGGTATTCCCCTTGTTTTTTAAAGCCGCG 147
BSNT_05986___ 115 GCTGCGGAAAGCGGTGTCAGCGCCGCTCAATCGACTGCCTATCTGGGCTA 164
||.|||||||.||||||||||||.||..|.||.||.||.|||.|||||||
RBAM_036210__ 148 GCGGCGGAAAACGGTGTCAGCGCGGCGGATTCTACCGCTTATTTGGGCTA 197
BSNT_05986___ 165 TACCATTG----CGATTTCAACGTTTATTCTTGCGATGCTCGGTCCTATT 210
|||.|||| || |.||.||||||.|.|||||||||||.||..|.
RBAM_036210__ 198 TACGATTGCCGCCG----CGACTTTTATTTTGGCGATGCTCGGCCCCGTC 243
BSNT_05986___ 211 TTAGGCACAATCGCCGACTATGAAGGGTGCAAGAAAAAGTTCTTCGGTTT 260
|||||.||.||.||||||||..||||.|||||||||..|||.||.|..||
RBAM_036210__ 244 TTAGGAACGATTGCCGACTACAAAGGATGCAAGAAACGGTTTTTTGCCTT 293
BSNT_05986___ 261 CTTTGTGTCAG-CCGGTGTCGCCAGCACCGCGATGCTCGCCTTTATCCCA 309
|||| |.||.| .||||||.||..|||||||...|||.||.||.||.||.
RBAM_036210__ 294 CTTT-TTTCTGATCGGTGTGGCGGGCACCGCCGCGCTGGCTTTGATTCCC 342
BSNT_05986___ 310 AGTGAGCATTGGCTGCTATTGCTACTGTTTTATACGATATCGGCTATCGG 359
.|.||...||||.||||.||..||.|.|.|||||||||.||..|.|||||
RBAM_036210__ 343 GGCGAATCTTGGATGCTGTTATTAATTTGTTATACGATTTCCACGATCGG 392
BSNT_05986___ 360 TTTTTCCGGCGCCAATGTGTTTTATGATGCCTTTCTCGTGGACGTCACGC 409
.|||.||||..|.|||||||||||||||||.||||||||.||.||..|..
RBAM_036210__ 393 CTTTGCCGGGTCTAATGTGTTTTATGATGCGTTTCTCGTTGATGTGGCCG 442
BSNT_05986___ 410 CTGAGAAACGGATGAATCTCGTCT-CGGCACGGGGTTTTGGCTTAGGATA 458
|..||.|.|||||||||.|.||.| ||.||..||||||.||| |.||.||
RBAM_036210__ 443 CAAAGGAGCGGATGAATATGGTGTCCGCCAGAGGGTTTGGGC-TGGGCTA 491
BSNT_05986___ 459 CATTGGCAGCACGATTCCATTTATCATCAGTATTGCTGTCATCCTGCTC- 507
.||.|||||.|||||.||.|||.||.||||.|||||.||.||.|| .||
RBAM_036210__ 492 TATCGGCAGTACGATCCCTTTTCTCCTCAGCATTGCCGTGATTCT-TTCA 540
BSNT_05986___ 508 GCACAAGCAGAGACGATTCCAGTGTCTG-------TATCGGCCGCAAGCC 550
||||||||.|||..||||||..||||.| |..||||||||
RBAM_036210__ 541 GCACAAGCGGAGGTGATTCCGCTGTCCGCCCAGGCTGCCGGCCGCA---- 586
BSNT_05986___ 551 AGCTGTCCTTTTTCATAACGGCTGCCTGGTGGGGGCTGTTCACTATCCCA 600
|..|||||||.||.|||||.||.||||||||||||||..|.|||||.
RBAM_036210__ 587 ---TTGCCTTTTTGATTACGGCGGCATGGTGGGGGCTGTTTTCGATCCCG 633
BSNT_05986___ 601 ATGATTAAACATGTCCATCAACGCTATTACATCAAAAGAGAACCTCATAT 650
.|..||...|..||||..||.||||||||.|||.|.||.||.||.|...|
RBAM_036210__ 634 CTCCTTCTCCGCGTCCGCCAGCGCTATTATATCGAGAGGGAGCCGCGGCT 683
BSNT_05986___ 651 TGTCATCAACAGCTTTAAGCGGCTCGGCCAG-ACGATGAAACGGATCAGG 699
|||.||||.|||.|||||.||||| ||||.| |||.||||.|.|||||||
RBAM_036210__ 684 TGTAATCAGCAGTTTTAAACGGCT-GGCCGGCACGCTGAAGCAGATCAGG 732
BSNT_05986___ 700 CAATACCGGGCACTTTTCCTCTTTTTGCTCGCTTATTTCTTTTATATCGA 749
.|..|||||||.||.||..|.|||.|||||||.||||||||.||.|||||
RBAM_036210__ 733 AAGCACCGGGCGCTGTTTTTGTTTCTGCTCGCCTATTTCTTCTACATCGA 782
BSNT_05986___ 750 CGGAGTCGGCACGATTATTACGATGTCGACATCCTATGGATCAGATTTAG 799
|||.||||||||.||.|||||.|||||.||.||.||.||..|.||..|.|
RBAM_036210__ 783 CGGGGTCGGCACCATCATTACAATGTCCACGTCATACGGGGCTGACCTCG 832
BSNT_05986___ 800 GGATCGGTTCCTCAAGCCTCCTGATCATCCTATTTGTCACCCAGGTGGTC 849
|.|||.|..|..|||..||.|||||..|..||||||||||.|||||.|||
RBAM_036210__ 833 GCATCAGCGCGGCAAATCTGCTGATTGTTTTATTTGTCACTCAGGTCGTC 882
BSNT_05986___ 850 GCTGCACCGTTTTCGATTGTATACGGAAAACTGGCAGAACGCTTCACGGG 899
||.||.||.|||||||||.|.||||||...|||||.|||||.||.|..||
RBAM_036210__ 883 GCCGCGCCTTTTTCGATTTTGTACGGACGGCTGGCCGAACGGTTTAAAGG 932
BSNT_05986___ 900 GAAGACCATGCTGTACGTCGGGATCGTCATTTATATGATCGTCTGCGTGT 949
.||.||.|||||.||.|.|||.||||.|.|.||||||||.||||||..||
RBAM_036210__ 933 AAAAACGATGCTTTATGCCGGAATCGGCGTGTATATGATTGTCTGCACGT 982
BSNT_05986___ 950 ATGCCTATTTTATGAAGACAACGATTGATTTCTGGATACTGGCTATGCTT 999
||||.|||||||||.|..|..|..|||||||||||.|..|||||||||||
RBAM_036210__ 983 ATGCTTATTTTATGGATTCCGCTTTTGATTTCTGGGTTTTGGCTATGCTT 1032
BSNT_05986___ 1000 GTCGCCACCTCGCAGGGCGGTATTCAAGCCCTAAGCCGTTCCTATTTCGC 1049
||||||||.||.||.||.||||||||.||.||.|||||.||.||.||.||
RBAM_036210__ 1033 GTCGCCACTTCCCAAGGAGGTATTCAGGCGCTGAGCCGCTCTTACTTTGC 1082
BSNT_05986___ 1050 CAAGCTTGTGCCAAAGCGCCACGCCAATGAATTCTTTGGCTTCTACAACA 1099
.||||||||.||.||.|...||||||||||.||.||.|||||.||.||.|
RBAM_036210__ 1083 AAAGCTTGTCCCCAAACAGAACGCCAATGAGTTTTTCGGCTTTTATAATA 1132
BSNT_05986___ 1100 TTTTTGGAAAATTCGCCTCAATTATGGGGCCGCTACTCATTGCCGTTACC 1149
|.||.||.||.|||||.||.|||||.||.|||||..|.||||||||.|||
RBAM_036210__ 1133 TCTTCGGCAAGTTCGCTTCGATTATCGGCCCGCTTTTGATTGCCGTGACC 1182
BSNT_05986___ 1150 GCCCAGCTGACCGGGAAATCCTCGACTGCGGTGTTCAGCCTGATCATTTT 1199
||||||||||||||.||.||.||..|.||.||||||||||||||||||||
RBAM_036210__ 1183 GCCCAGCTGACCGGAAATTCGTCAGCCGCCGTGTTCAGCCTGATCATTTT 1232
BSNT_05986___ 1200 GTTTGTGATTGGTATTGTGATTCTTGCCTTTGTTCCCGAGGAAACCAGCA 1249
||||||.||.||.||||..||||||||.|||||.||.|||||.||
RBAM_036210__ 1233 GTTTGTAATCGGGATTGGCATTCTTGCGTTTGTGCCTGAGGAGAC----- 1277
BSNT_05986___ 1250 CAGATGTCAGCCAGCAGCAAAATGACCTGCCCCTTTAA 1287
|..||.|
RBAM_036210__ 1278 --GGCGTAA----------------------------- 1284
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