Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05978 and RBAM_036170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:29
# Commandline: needle
# -asequence dna-align/BSNT_05978___katE.1.9828.seq
# -bsequence dna-align/RBAM_036170___katE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05978___katE-RBAM_036170___katE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05978___katE-RBAM_036170___katE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05978___katE
# 2: RBAM_036170___katE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2119
# Identity: 1631/2119 (77.0%)
# Similarity: 1631/2119 (77.0%)
# Gaps: 125/2119 ( 5.9%)
# Score: 6346.0
#
#
#=======================================
BSNT_05978___ 1 ATGAGTGATGATCAAAACAAACGTGTAAATGAACACTCAAAGGACGAGCA 50
|||||||||||||||||||||||.|||||||||||||||||||||||.||
RBAM_036170__ 1 ATGAGTGATGATCAAAACAAACGAGTAAATGAACACTCAAAGGACGAACA 50
BSNT_05978___ 51 GCTTGAACAGTACAGGACCGATAACAGCGGGAAGAAAATGACGACAAACC 100
|||.||.||||||.||.|.|||||||||||.||.|||||||||||.||.|
RBAM_036170__ 51 GCTGGAGCAGTACCGGTCTGATAACAGCGGCAAAAAAATGACGACCAATC 100
BSNT_05978___ 101 A-AGGCTTGCGAGTGTCAGAGGATGAGCATTCGTTAAAAGCCGGGGTTCG 149
| .||||| ||.|||||.||||||||.|||||.||||||||.||.||.||
RBAM_036170__ 101 AGGGGCTT-CGCGTGTCTGAGGATGAACATTCTTTAAAAGCGGGCGTCCG 149
BSNT_05978___ 150 CGGTCCGACGCTGATGGAGGATTTTCACTTTCGGGAGAAAATGACGCACT 199
|||.||.||||||||||||||||||||.|||||.||.|||||||||||||
RBAM_036170__ 150 CGGCCCCACGCTGATGGAGGATTTTCATTTTCGTGAAAAAATGACGCACT 199
BSNT_05978___ 200 TTGACCATGAGAGGATTCCGGAGCGCGTTGTGCATGCGCGCGGGTATGGC 249
|||||||.|||.||||||||||.||.||.||.||||||||||||||.|||
RBAM_036170__ 200 TTGACCACGAGCGGATTCCGGAACGGGTCGTTCATGCGCGCGGGTACGGC 249
BSNT_05978___ 250 GTGCATGGCTTTTTTCAGGTTTACGAACCAATGACGGAATATACACGGGC 299
||.|||||...|||||||||.||||||||.||||||||||||||||||||
RBAM_036170__ 250 GTTCATGGGCATTTTCAGGTGTACGAACCGATGACGGAATATACACGGGC 299
BSNT_05978___ 300 CAAATTTCTTCAGGACCCTTCGGTGAAGACACCGGTATTTGTCCGTTTTT 349
.||||||.|.||.|||||.||.||.||.||.||.||.||.||||||||.|
RBAM_036170__ 300 GAAATTTTTGCAAGACCCGTCCGTCAAAACGCCTGTTTTCGTCCGTTTCT 349
BSNT_05978___ 350 CTACGGTCGCGGGTTCTAAAGGCTCCGCAGACACGGTGCGGGATGCCAGA 399
|.||.||.||||||||.||.||.||.||.|||||.||.||.||.|||||.
RBAM_036170__ 350 CAACAGTGGCGGGTTCCAAGGGGTCAGCCGACACCGTCCGTGACGCCAGG 399
BSNT_05978___ 400 GGCTTTGCGACAAAATTTTATACTGAAGAAGGAAACTATGACCTTGTGGG 449
||.||||||||.||.|||||||||||||||||.|||||||||||.||.||
RBAM_036170__ 400 GGATTTGCGACGAAGTTTTATACTGAAGAAGGGAACTATGACCTCGTCGG 449
BSNT_05978___ 450 AAATAACATTCCGGTGTTTTTCATTCAGGATGCGATCAAATTTCCGGATT 499
|||.||.|||||||||||.|||||||||||.|||||||||||.||||||.
RBAM_036170__ 450 AAACAATATTCCGGTGTTCTTCATTCAGGACGCGATCAAATTCCCGGATC 499
BSNT_05978___ 500 TGGTTCATGCGTTTAAGCCTGAGCCACACAATGAAATGCCTCAGGCCGCG 549
|.|||||.||..|.||.||.||.||.||||||||||||||.|||||.|||
RBAM_036170__ 500 TCGTTCACGCCATAAAACCGGAACCGCACAATGAAATGCCGCAGGCTGCG 549
BSNT_05978___ 550 ACTGCTCACGATACGTTTTGGGATTTTGTCGCCAATAACCCTGAGTCGGC 599
||.|||||.||||||||.||||||||||||||.||.||.|||||.||.||
RBAM_036170__ 550 ACGGCTCATGATACGTTCTGGGATTTTGTCGCAAACAATCCTGAATCCGC 599
BSNT_05978___ 600 TCACATGGTGATGTGGACGATGTCAGACAGAGGCATCCCGCGCAGCTACA 649
.||||||||.||||||||||||||.|||.|.|||||||||||.|||||..
RBAM_036170__ 600 GCACATGGTCATGTGGACGATGTCTGACCGCGGCATCCCGCGGAGCTATC 649
BSNT_05978___ 650 GAATGATGGAAGGCTTCGGCGTTCACACGTTCCGTTTTGTCAATGAACAA 699
|.||||||||.|||||||||||.||.|||||||||||.|||||.||..||
RBAM_036170__ 650 GGATGATGGAGGGCTTCGGCGTGCATACGTTCCGTTTCGTCAACGAGAAA 699
BSNT_05978___ 700 GGAAAGGCACGTTTCGTGAAATTTCACTGGAAGCCGGTGCTCGGCGTGCA 749
|||||.||.||.||.||.|||||.||||||||.||.|||||||||||.||
RBAM_036170__ 700 GGAAAAGCGCGCTTTGTAAAATTCCACTGGAAACCCGTGCTCGGCGTTCA 749
BSNT_05978___ 750 TTCTCTCGTATGGGATGAAGCGCAAAAAATTGCCGGGAAAGATCCAGATT 799
|||.||||||||||||||||||||.||||||||||||||||||||.||||
RBAM_036170__ 750 TTCCCTCGTATGGGATGAAGCGCAGAAAATTGCCGGGAAAGATCCCGATT 799
BSNT_05978___ 800 TCCACCGCCGTGACCTGTGGGAAACAATTGAAAACGGCGGCAAGGTTGAA 849
||.|||||||.||||||||||||||.|||||||||||||||||.||.||.
RBAM_036170__ 800 TCAACCGCCGCGACCTGTGGGAAACGATTGAAAACGGCGGCAAAGTCGAG 849
BSNT_05978___ 850 TACGAGCTCGGCGTGCAGATGATTGATGAGGAAGATGAATTCAAGTTTGA 899
||.||||||||.||.|||||||||||.||.|||||||||||.||.|||||
RBAM_036170__ 850 TATGAGCTCGGTGTTCAGATGATTGACGAAGAAGATGAATTTAAATTTGA 899
BSNT_05978___ 900 TTTTGATATTCTTGACCCAACTAAGCTGTGGCCGGAAGAGCTTGTGCCGG 949
|||.|||||.|||||.||.||.||||||||||||||.|||.|.||.||.|
RBAM_036170__ 900 TTTCGATATCCTTGATCCGACGAAGCTGTGGCCGGAGGAGTTGGTTCCCG 949
BSNT_05978___ 950 TGAAGATCATTGGAAAAATGACGCTGAACCGCAATCAGGATAATGTGTTT 999
|.|||.|.||.|||||||||||.||..|||||||||||||.|||||.|||
RBAM_036170__ 950 TCAAGCTGATCGGAAAAATGACCCTTGACCGCAATCAGGACAATGTCTTT 999
BSNT_05978___ 1000 GCGGAAACAGAACAAGTCGCATTCCACCCGGGAAATGTCGTGCCGGGCAT 1049
||||||||.|||||||||||||||||||||||.|||||||||||||||||
RBAM_036170__ 1000 GCGGAAACGGAACAAGTCGCATTCCACCCGGGCAATGTCGTGCCGGGCAT 1049
BSNT_05978___ 1050 CGATTTTACCAATGACCCGCTATTGCAGGGGCGGCTTTTCTCTTATACGG 1099
.|||||.||||||||.|||||..|.||.||.|||||||||||||||||||
RBAM_036170__ 1050 TGATTTCACCAATGATCCGCTTCTTCAAGGCCGGCTTTTCTCTTATACGG 1099
BSNT_05978___ 1100 ATACACAGCTCATCCGTCTTGGCGGCCCGAACTTCCATGAGATTCCGATT 1149
|||||||||||||||||||||||||.|||||.||.||.|||||||||||.
RBAM_036170__ 1100 ATACACAGCTCATCCGTCTTGGCGGGCCGAATTTTCACGAGATTCCGATC 1149
BSNT_05978___ 1150 AACCGGCCGGTCTGTCCATTCCATAACAACCAATACGACGGCTATCACCG 1199
||||||||||||||.||.||||||||||||||||||||||||||.|||||
RBAM_036170__ 1150 AACCGGCCGGTCTGCCCGTTCCATAACAACCAATACGACGGCTACCACCG 1199
BSNT_05978___ 1200 GATGACGATCAATAAGGGACCTGTCGCTTATCATAAAAACTCACTGCAAA 1249
|||||||||.||||||||.||.|||||.|||||||||||.||.|||||.|
RBAM_036170__ 1200 GATGACGATTAATAAGGGTCCCGTCGCCTATCATAAAAATTCCCTGCAGA 1249
BSNT_05978___ 1250 ACAATGATCCGTCGCCTGCGACAGCTGAAGAAGGCGGCTACGTCCACTAT 1299
||||||||||||||||.||..|||..|||||||||||.|||||.||.||.
RBAM_036170__ 1250 ACAATGATCCGTCGCCGGCCTCAGAAGAAGAAGGCGGATACGTTCATTAC 1299
BSNT_05978___ 1300 CAGGAAAAAGTCGAGGGCAAAAAAATCCGCCAGCGAAGCGACAGCTTCAA 1349
|||||||||||.||.||||.|||||||||||||||.||.||.||||||||
RBAM_036170__ 1300 CAGGAAAAAGTAGAAGGCAGAAAAATCCGCCAGCGCAGTGAGAGCTTCAA 1349
BSNT_05978___ 1350 CGATTATTACTCACAGGCGAAGCTTTTCTGGAACAGCATGTCTCCTGTGG 1399
.||.||||..||.|||||.|||.|.||||||||||||||||||||.|..|
RBAM_036170__ 1350 TGACTATTTTTCTCAGGCCAAGATGTTCTGGAACAGCATGTCTCCCGCCG 1399
BSNT_05978___ 1400 AGAAACAGCACATCATTTCTGCTTTCTGCTTCGAGGTCGGGAAGGTCAAA 1449
|||||.|.||.|||||.||.||.|||||.||.||.|||||.||.||.||.
RBAM_036170__ 1400 AGAAAGAACATATCATCTCCGCATTCTGTTTTGAAGTCGGAAAAGTGAAC 1449
BSNT_05978___ 1450 AGCAAAGACGTACAGCGGCAGGTCGTTGATGTCTTCAGCAATGTCGATGC 1499
|||||.||.||.||||.||||||.||||||||||||||..|.|||||.||
RBAM_036170__ 1450 AGCAAGGATGTGCAGCAGCAGGTGGTTGATGTCTTCAGTCACGTCGACGC 1499
BSNT_05978___ 1500 AGATTTAGCAGAAGAAATTGCCAAAGGAGTAGGCGTGGCGACGCCCGCGA 1549
.|...|.||.||.....||||.||||||.|.||||||....||||..|||
RBAM_036170__ 1500 CGGGCTTGCCGAGCGTGTTGCGAAAGGAATCGGCGTGAACCCGCCGCCGA 1549
BSNT_05978___ 1550 AG---CGTAAAGCATCTAAAGAAA--TTCTTACTTCGCCTGCGTTAAGCC 1594
|| ||| |.||||.|.|||| ||| |||||.||.||.|||||||
RBAM_036170__ 1550 AGGACCGT---GAATCTGATGAAACGTTC--ACTTCCCCGGCCTTAAGCC 1594
BSNT_05978___ 1595 ----AAGCCCGTACAGTGAAAACCGCGTCAACAAGAAAAGTCGCTGT--- 1637
||.| ||.|||||.||.||..|.|||||..|.|||||.||
RBAM_036170__ 1595 AGGAAAAC----ACGGTGAAGACGGCAGCGACAAGGCAGGTCGCGGTTTT 1640
BSNT_05978___ 1638 -ACTGGCCGGAAACGGATT---TCATGAAAAAGAGCTGCAAAC-AGTGCT 1682
||.|.|| ||||.|| |.||||.|||| .||||| ||||||
RBAM_036170__ 1641 AACCGACC----ACGGGTTTTCTGATGAGAAAG----TCAAACAAGTGCT 1682
BSNT_05978___ 1683 GGAAGCCTTAAAGCAAGAAGGAATCACAGTGGATATCATCAGCCAAAATC 1732
.||.||.|..||.||.|..|||.|||.||..|||||||||||||.....|
RBAM_036170__ 1683 TGACGCATGCAAACAGGCGGGAGTCAGAGCCGATATCATCAGCCCCGCGC 1732
BSNT_05978___ 1733 TGGGGTATATGACAAGCGGCAGCGGACA---------GCAGCTTGAGGC- 1772
|||| ||.||.||..|||.| |.||||.||.||
RBAM_036170__ 1733 TGGG---------AACCGTCAAGGGAGAAAACGGTACGGAGCTGGAAGCG 1773
BSNT_05978___ 1773 -CAGCGGCACGTTCCTGACGGTTGATTCTGTTCTGTATGATGCCGTCT-- 1819
|||| |||.||||||||.|..|||||.||.|||||.||.||.||.|
RBAM_036170__ 1774 TCAGC--CACTTTCCTGACAGCGGATTCCGTCCTGTACGACGCTGTTTTC 1821
BSNT_05978___ 1820 ATGCCGCAGGAGGGCCGGAGTTAAA--------AGACA---ACAAA---C 1855
||.||| ||.|.|||| ||||| .|||| |
RBAM_036170__ 1822 ATTCCG----------GGCGGTAAACAAAGCACAGACAGCCTCAAAGCCC 1861
BSNT_05978___ 1856 AA------GCGATGGCGTTTATCAGAGAAGCTTACAATCACTACAAGGCG 1899
|| ||.|..|..||..||||.|||||.|.||..||.|||||.|||
RBAM_036170__ 1862 AAAAATCGGCCAGAGACTTCGTCAGCGAAGCCTTCAGCCATTACAAAGCG 1911
BSNT_05978___ 1900 ATCGGTGCAGCAAATGAAGGAATTGACCTTCT-TCAATCCT--CTGTCGG 1946
|||||.||..|...||||||||..||.||||| .| ||| |.|.|||
RBAM_036170__ 1912 ATCGGCGCCTCCGGTGAAGGAAAAGAACTTCTCGC---CCTCGCCGCCGG 1958
BSNT_05978___ 1947 ----GACAACAGAGGGACCAGGCATCGTAACGGCTAAAGATGAACCTGAC 1992
||.||| ||.||.|||.|.||..||| |.| |||.|||..
RBAM_036170__ 1959 AACCGAAAAC----GGCCCCGGCCTTGTTCCGG---ACG--GAAACTGCG 1999
BSNT_05978___ 1993 TACACCGCTTTCAGCAAGGCATTTATCGATGCGGTTGCTGCTCATCGCCA 2042
.||| ||||.|..|.||.||.||||..|||||.||
RBAM_036170__ 2000 AACA----------------ATTTCTGAAAGCCGTGGCTGAGCATCGGCA 2033
BSNT_05978___ 2043 TTGGGATAGACGAATTTGA 2061
||||||.|||...||.|.|
RBAM_036170__ 2034 TTGGGACAGAAACATATAA 2052
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