Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05973 and RBAM_036140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:28
# Commandline: needle
# -asequence dna-align/BSNT_05973___yxjA.1.9828.seq
# -bsequence dna-align/RBAM_036140___yxjA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05973___yxjA-RBAM_036140___yxjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05973___yxjA-RBAM_036140___yxjA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05973___yxjA
# 2: RBAM_036140___yxjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1204
# Identity: 922/1204 (76.6%)
# Similarity: 922/1204 (76.6%)
# Gaps: 20/1204 ( 1.7%)
# Score: 3457.0
#
#
#=======================================
BSNT_05973___ 1 ATGTACTTTTTACTAAACCTTGTCGGTCTCATTGTGATTATGGCAGTTGT 50
||||||||||||.|.|||.||||||||||||||||..|.|||||.|||||
RBAM_036140__ 1 ATGTACTTTTTATTGAACATTGTCGGTCTCATTGTTGTCATGGCTGTTGT 50
BSNT_05973___ 51 ATTCCTATGTTCTCCGCAGAAAAAGAAAATCAAGTGGCGCCCGATCATGA 100
.|||.||||.|||||..|.||.|||||.||.||.|||||.|||||..|.|
RBAM_036140__ 51 TTTCTTATGCTCTCCCAACAAGAAGAAGATTAAATGGCGTCCGATTGTCA 100
BSNT_05973___ 101 CGTTAATTGTTCTGGAATTGCTGATTACTTGGTTTATGCTGGGAACAAAA 150
.|.|..|.||..|.||.||.||||||||||||||||||.|.||.||||||
RBAM_036140__ 101 TGCTCCTCGTCTTTGAGTTTCTGATTACTTGGTTTATGTTAGGGACAAAA 150
BSNT_05973___ 151 GTCGGAAGCTGGGCTATCGGTAAAATCGGTGATTTCTTCACTTGGCTGAT 200
.||||..|||..|..|||||.||.|||||.|..|||||.||.||||||||
RBAM_036140__ 151 ATCGGCGGCTTTGTCATCGGGAAGATCGGCGCGTTCTTTACATGGCTGAT 200
BSNT_05973___ 201 TGCTTGCGCCAGTGACGGTATCGCGTTTGCCTTTCCGTCAGTGATGGCGA 250
|.|.|||||||||.|.||.||.|||||.||.||||||||.||.|||||.|
RBAM_036140__ 201 TTCCTGCGCCAGTCAAGGGATTGCGTTCGCTTTTCCGTCTGTCATGGCCA 250
BSNT_05973___ 251 ATGAAACAGTAGACTTTTTCTTTAGTGCGCTTCTTCCAATTATCTTTATC 300
||...||.||.||.||||||||.||.||..|.||.||.||||||||..||
RBAM_036140__ 251 ATCCGACGGTTGATTTTTTCTTCAGCGCATTGCTGCCGATTATCTTCGTC 300
BSNT_05973___ 301 GTCACATTCTTTGATATTTTAACGTATTTCGGTATTTTGCCTTGGCTGAT 350
||.||.|||||||||||..|..||||||||||||||.||||.|||||.||
RBAM_036140__ 301 GTGACCTTCTTTGATATGCTGTCGTATTTCGGTATTCTGCCGTGGCTCAT 350
BSNT_05973___ 351 TGATAAAATCGGATGGGTGATTTCAAAGGCTTCCCGCTTGCCGAAATTAG 400
||||||||||||.|||.|||||||.||....|||||..|||||||..|.|
RBAM_036140__ 351 TGATAAAATCGGCTGGCTGATTTCTAAAATATCCCGTCTGCCGAAGCTGG 400
BSNT_05973___ 401 AAAGCTTTTTCTCTATTCAAATGATGTTTCTGGGAAATACCGAAGCACTT 450
|.|||||||||||.||.||.|||||||||.|.||||||||.|||||..|.
RBAM_036140__ 401 AGAGCTTTTTCTCCATCCAGATGATGTTTTTAGGAAATACGGAAGCTTTA 450
BSNT_05973___ 451 GCGGTTATCCGCCAGCAGCTAACGGTTTTAAGCAACAACCGCCTGCTCAC 500
||.||.||||||||||||||..|.|...|.||||||||.||.||..|.||
RBAM_036140__ 451 GCCGTCATCCGCCAGCAGCTTGCCGCCGTCAGCAACAATCGGCTTTTGAC 500
BSNT_05973___ 501 ATTCGGCTTAATGAGCATGAGCAGCATCAGCGGCTCCATTATCGGATCTT 550
||||||..|.||||||||||||||||||||||||||.||.||||||||.|
RBAM_036140__ 501 ATTCGGGCTGATGAGCATGAGCAGCATCAGCGGCTCGATCATCGGATCAT 550
BSNT_05973___ 551 ATCTGTCAATGGTGCCTGCGACATACTTGTTTACAGCCATTCCTTTGAAC 600
|..||.|.|||||.||..|.||.||..|||||||||||||.||..||||.
RBAM_036140__ 551 ACTTGACGATGGTTCCGTCCACTTATGTGTTTACAGCCATCCCGCTGAAT 600
BSNT_05973___ 601 TGCTTAAACGCGCTGATTATCGCAAACCTGCTGAATCCTGTTCACGTGCC 650
||||||||||||||..|.|||||.||..||||||||||.||..||||..|
RBAM_036140__ 601 TGCTTAAACGCGCTTTTAATCGCCAATATGCTGAATCCCGTGGACGTTTC 650
BSNT_05973___ 651 TGAGGATGAAGATATCATCTATACACC--GCCT---AAAGAAGAGAAGAA 695
|.|.||.||.|||||.||.|| | |||| ||||..|||||.||
RBAM_036140__ 651 TAAAGAGGATGATATTATTTA-----CGTGCCTTCAAAAGCGGAGAAAAA 695
BSNT_05973___ 696 AGACTTTTTCTCTACGATTTCTAACAGTATGCTTGTCGGCATGAACATGG 745
||||||.|||||.|||||||||||||||||||||||||||||||||||||
RBAM_036140__ 696 AGACTTCTTCTCCACGATTTCTAACAGTATGCTTGTCGGCATGAACATGG 745
BSNT_05973___ 746 TTATCGTTATTTTAGCAATGGTGATCGGATATGTCGCATTAACGTCAGCA 795
|.||.||.||||||||.|||||||||||.|||||.||.||||||.|.||
RBAM_036140__ 746 TCATTGTCATTTTAGCGATGGTGATCGGCTATGTGGCGTTAACGGCCGC- 794
BSNT_05973___ 796 GTT-AATGGCATTCTTGGCGTTTTCGTACACGGCCTGACCATCCAGACGA 844
||| ||.|||.|.||.||..|.|||.|.|||||..|||||||.||.|.||
RBAM_036140__ 795 GTTAAACGGCGTACTCGGACTGTTCATGCACGGGTTGACCATTCAAAAGA 844
BSNT_05973___ 845 TTTTTGCTTATCTGTTCAGTCCATTCGCATTCCTGCTTGGATT--GCCAG 892
||||..|.||..|.||||||||.||.||.|||||.||.||||| || |
RBAM_036140__ 845 TTTTCTCATACATCTTCAGTCCGTTTGCCTTCCTCCTCGGATTAGGC--G 892
BSNT_05973___ 893 TGCACGATGCGATGTATGTTGCTCAGCTGATGGGCATGAAATTAGCAACG 942
|.||.||.|||||||||||.||.||||||||||||||.||..|.||.|||
RBAM_036140__ 893 TACATGACGCGATGTATGTCGCACAGCTGATGGGCATCAAGCTCGCGACG 942
BSNT_05973___ 943 AACGAGTTTGTTGCGATGCTTGACTTGAAAAACAATCTCAAATCCCTTCC 992
||.||.|||||.||.|||...||..|||||....|.||.||.||.|||||
RBAM_036140__ 943 AATGAATTTGTGGCAATGGCCGATCTGAAAGGGCAGCTGAATTCACTTCC 992
BSNT_05973___ 993 GCCTCACACCGTTGCGGTGGCGACGACATTCCTGACGTCCTTTGCAAACT 1042
|||.|||||..||||.|||||.||||||||||||||.||.||.|||||||
RBAM_036140__ 993 GCCGCACACGATTGCCGTGGCTACGACATTCCTGACATCATTCGCAAACT 1042
BSNT_05973___ 1043 TCAGTACGGTCGGCATGATTTACGGCACGTA-CAAT-TCGATCCTTGACG 1090
||||.||..||||.|||||.|||||..|.|| |||| || |.|||||.|
RBAM_036140__ 1043 TCAGCACCATCGGTATGATCTACGGATCTTATCAATCTC--TGCTTGATG 1090
BSNT_05973___ 1091 GAGAAAAATCAACGGTCATCGGGAGAAACGTGTGGAAACTGATCGTAAGC 1140
|.|||||||||.|..|||||||.|.||||||.|||||.|||.|.||.|||
RBAM_036140__ 1091 GTGAAAAATCAGCCATCATCGGAAAAAACGTCTGGAAGCTGCTTGTCAGC 1140
BSNT_05973___ 1141 GGAATTGCAGTATCTTTATTAAGTGCTGCGATTGTCGGCCTGTTTGTGTG 1190
||||||||.||.||.|||||.||.||.|||||||||||..|||||||.||
RBAM_036140__ 1141 GGAATTGCCGTTTCCTTATTGAGCGCGGCGATTGTCGGATTGTTTGTCTG 1190
BSNT_05973___ 1191 GTAG 1194
|||.
RBAM_036140__ 1191 GTAA 1194
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