Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05973 and RBAM_036140

See Amino acid alignment / Visit BSNT_05973 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:28
# Commandline: needle
#    -asequence dna-align/BSNT_05973___yxjA.1.9828.seq
#    -bsequence dna-align/RBAM_036140___yxjA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05973___yxjA-RBAM_036140___yxjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05973___yxjA-RBAM_036140___yxjA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05973___yxjA
# 2: RBAM_036140___yxjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1204
# Identity:     922/1204 (76.6%)
# Similarity:   922/1204 (76.6%)
# Gaps:          20/1204 ( 1.7%)
# Score: 3457.0
# 
#
#=======================================

BSNT_05973___      1 ATGTACTTTTTACTAAACCTTGTCGGTCTCATTGTGATTATGGCAGTTGT     50
                     ||||||||||||.|.|||.||||||||||||||||..|.|||||.|||||
RBAM_036140__      1 ATGTACTTTTTATTGAACATTGTCGGTCTCATTGTTGTCATGGCTGTTGT     50

BSNT_05973___     51 ATTCCTATGTTCTCCGCAGAAAAAGAAAATCAAGTGGCGCCCGATCATGA    100
                     .|||.||||.|||||..|.||.|||||.||.||.|||||.|||||..|.|
RBAM_036140__     51 TTTCTTATGCTCTCCCAACAAGAAGAAGATTAAATGGCGTCCGATTGTCA    100

BSNT_05973___    101 CGTTAATTGTTCTGGAATTGCTGATTACTTGGTTTATGCTGGGAACAAAA    150
                     .|.|..|.||..|.||.||.||||||||||||||||||.|.||.||||||
RBAM_036140__    101 TGCTCCTCGTCTTTGAGTTTCTGATTACTTGGTTTATGTTAGGGACAAAA    150

BSNT_05973___    151 GTCGGAAGCTGGGCTATCGGTAAAATCGGTGATTTCTTCACTTGGCTGAT    200
                     .||||..|||..|..|||||.||.|||||.|..|||||.||.||||||||
RBAM_036140__    151 ATCGGCGGCTTTGTCATCGGGAAGATCGGCGCGTTCTTTACATGGCTGAT    200

BSNT_05973___    201 TGCTTGCGCCAGTGACGGTATCGCGTTTGCCTTTCCGTCAGTGATGGCGA    250
                     |.|.|||||||||.|.||.||.|||||.||.||||||||.||.|||||.|
RBAM_036140__    201 TTCCTGCGCCAGTCAAGGGATTGCGTTCGCTTTTCCGTCTGTCATGGCCA    250

BSNT_05973___    251 ATGAAACAGTAGACTTTTTCTTTAGTGCGCTTCTTCCAATTATCTTTATC    300
                     ||...||.||.||.||||||||.||.||..|.||.||.||||||||..||
RBAM_036140__    251 ATCCGACGGTTGATTTTTTCTTCAGCGCATTGCTGCCGATTATCTTCGTC    300

BSNT_05973___    301 GTCACATTCTTTGATATTTTAACGTATTTCGGTATTTTGCCTTGGCTGAT    350
                     ||.||.|||||||||||..|..||||||||||||||.||||.|||||.||
RBAM_036140__    301 GTGACCTTCTTTGATATGCTGTCGTATTTCGGTATTCTGCCGTGGCTCAT    350

BSNT_05973___    351 TGATAAAATCGGATGGGTGATTTCAAAGGCTTCCCGCTTGCCGAAATTAG    400
                     ||||||||||||.|||.|||||||.||....|||||..|||||||..|.|
RBAM_036140__    351 TGATAAAATCGGCTGGCTGATTTCTAAAATATCCCGTCTGCCGAAGCTGG    400

BSNT_05973___    401 AAAGCTTTTTCTCTATTCAAATGATGTTTCTGGGAAATACCGAAGCACTT    450
                     |.|||||||||||.||.||.|||||||||.|.||||||||.|||||..|.
RBAM_036140__    401 AGAGCTTTTTCTCCATCCAGATGATGTTTTTAGGAAATACGGAAGCTTTA    450

BSNT_05973___    451 GCGGTTATCCGCCAGCAGCTAACGGTTTTAAGCAACAACCGCCTGCTCAC    500
                     ||.||.||||||||||||||..|.|...|.||||||||.||.||..|.||
RBAM_036140__    451 GCCGTCATCCGCCAGCAGCTTGCCGCCGTCAGCAACAATCGGCTTTTGAC    500

BSNT_05973___    501 ATTCGGCTTAATGAGCATGAGCAGCATCAGCGGCTCCATTATCGGATCTT    550
                     ||||||..|.||||||||||||||||||||||||||.||.||||||||.|
RBAM_036140__    501 ATTCGGGCTGATGAGCATGAGCAGCATCAGCGGCTCGATCATCGGATCAT    550

BSNT_05973___    551 ATCTGTCAATGGTGCCTGCGACATACTTGTTTACAGCCATTCCTTTGAAC    600
                     |..||.|.|||||.||..|.||.||..|||||||||||||.||..||||.
RBAM_036140__    551 ACTTGACGATGGTTCCGTCCACTTATGTGTTTACAGCCATCCCGCTGAAT    600

BSNT_05973___    601 TGCTTAAACGCGCTGATTATCGCAAACCTGCTGAATCCTGTTCACGTGCC    650
                     ||||||||||||||..|.|||||.||..||||||||||.||..||||..|
RBAM_036140__    601 TGCTTAAACGCGCTTTTAATCGCCAATATGCTGAATCCCGTGGACGTTTC    650

BSNT_05973___    651 TGAGGATGAAGATATCATCTATACACC--GCCT---AAAGAAGAGAAGAA    695
                     |.|.||.||.|||||.||.||     |  ||||   ||||..|||||.||
RBAM_036140__    651 TAAAGAGGATGATATTATTTA-----CGTGCCTTCAAAAGCGGAGAAAAA    695

BSNT_05973___    696 AGACTTTTTCTCTACGATTTCTAACAGTATGCTTGTCGGCATGAACATGG    745
                     ||||||.|||||.|||||||||||||||||||||||||||||||||||||
RBAM_036140__    696 AGACTTCTTCTCCACGATTTCTAACAGTATGCTTGTCGGCATGAACATGG    745

BSNT_05973___    746 TTATCGTTATTTTAGCAATGGTGATCGGATATGTCGCATTAACGTCAGCA    795
                     |.||.||.||||||||.|||||||||||.|||||.||.||||||.|.|| 
RBAM_036140__    746 TCATTGTCATTTTAGCGATGGTGATCGGCTATGTGGCGTTAACGGCCGC-    794

BSNT_05973___    796 GTT-AATGGCATTCTTGGCGTTTTCGTACACGGCCTGACCATCCAGACGA    844
                     ||| ||.|||.|.||.||..|.|||.|.|||||..|||||||.||.|.||
RBAM_036140__    795 GTTAAACGGCGTACTCGGACTGTTCATGCACGGGTTGACCATTCAAAAGA    844

BSNT_05973___    845 TTTTTGCTTATCTGTTCAGTCCATTCGCATTCCTGCTTGGATT--GCCAG    892
                     ||||..|.||..|.||||||||.||.||.|||||.||.|||||  ||  |
RBAM_036140__    845 TTTTCTCATACATCTTCAGTCCGTTTGCCTTCCTCCTCGGATTAGGC--G    892

BSNT_05973___    893 TGCACGATGCGATGTATGTTGCTCAGCTGATGGGCATGAAATTAGCAACG    942
                     |.||.||.|||||||||||.||.||||||||||||||.||..|.||.|||
RBAM_036140__    893 TACATGACGCGATGTATGTCGCACAGCTGATGGGCATCAAGCTCGCGACG    942

BSNT_05973___    943 AACGAGTTTGTTGCGATGCTTGACTTGAAAAACAATCTCAAATCCCTTCC    992
                     ||.||.|||||.||.|||...||..|||||....|.||.||.||.|||||
RBAM_036140__    943 AATGAATTTGTGGCAATGGCCGATCTGAAAGGGCAGCTGAATTCACTTCC    992

BSNT_05973___    993 GCCTCACACCGTTGCGGTGGCGACGACATTCCTGACGTCCTTTGCAAACT   1042
                     |||.|||||..||||.|||||.||||||||||||||.||.||.|||||||
RBAM_036140__    993 GCCGCACACGATTGCCGTGGCTACGACATTCCTGACATCATTCGCAAACT   1042

BSNT_05973___   1043 TCAGTACGGTCGGCATGATTTACGGCACGTA-CAAT-TCGATCCTTGACG   1090
                     ||||.||..||||.|||||.|||||..|.|| |||| ||  |.|||||.|
RBAM_036140__   1043 TCAGCACCATCGGTATGATCTACGGATCTTATCAATCTC--TGCTTGATG   1090

BSNT_05973___   1091 GAGAAAAATCAACGGTCATCGGGAGAAACGTGTGGAAACTGATCGTAAGC   1140
                     |.|||||||||.|..|||||||.|.||||||.|||||.|||.|.||.|||
RBAM_036140__   1091 GTGAAAAATCAGCCATCATCGGAAAAAACGTCTGGAAGCTGCTTGTCAGC   1140

BSNT_05973___   1141 GGAATTGCAGTATCTTTATTAAGTGCTGCGATTGTCGGCCTGTTTGTGTG   1190
                     ||||||||.||.||.|||||.||.||.|||||||||||..|||||||.||
RBAM_036140__   1141 GGAATTGCCGTTTCCTTATTGAGCGCGGCGATTGTCGGATTGTTTGTCTG   1190

BSNT_05973___   1191 GTAG   1194
                     |||.
RBAM_036140__   1191 GTAA   1194


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