Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05955 and RBAM_036090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:27
# Commandline: needle
# -asequence dna-align/BSNT_05955___pepT.1.9828.seq
# -bsequence dna-align/RBAM_036090___pepT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05955___pepT-RBAM_036090___pepT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05955___pepT-RBAM_036090___pepT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05955___pepT
# 2: RBAM_036090___pepT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1270
# Identity: 936/1270 (73.7%)
# Similarity: 936/1270 (73.7%)
# Gaps: 74/1270 ( 5.8%)
# Score: 3413.0
#
#
#=======================================
BSNT_05955___ 1 ATGAAAGAAGAAATCATTGAACGGTTTACTACATATGTAAAAGTCGACAC 50
||||||.|.||||||||||||||.|||||..|.||||||||||||||.||
RBAM_036090__ 1 ATGAAAAATGAAATCATTGAACGCTTTACCTCTTATGTAAAAGTCGATAC 50
BSNT_05955___ 51 ACAGTCCGATG-AATCAGTTGACACTTGTCCTTCCACACCCGGCCAATTG 99
||||||.||.| ||.|| .|||.|..||.|||||.||.||||||||..||
RBAM_036090__ 51 ACAGTCTGACGAAAACA-ATGAAAACTGCCCTTCAACCCCCGGCCAGCTG 99
BSNT_05955___ 100 ACATTAGGAAACATGCTCGTTGATGAATTGAAGTCAATCGGCATGCAGGA 149
|||||.|..||||||||.|..||||||||.|||||.|||||||||
RBAM_036090__ 100 ACATTGGCCAACATGCTGGCAGATGAATTAAAGTCGATCGGCATG----- 144
BSNT_05955___ 150 TGCAGCCA------TTGATGAAAACGGCTATGTCATGGCAACTCTTCCCT 193
.|||.|| |.|||||.||.||.||.||||||||.|||||.||..
RBAM_036090__ 145 -ACAGACATCACAGTCGATGACAATGGGTACGTCATGGCGACTCTGCCGG 193
BSNT_05955___ 194 CCAATACTGAAAAAGACGTGCCGACAATCGGTTTTCTCGCTCACGTCGAC 243
|.|||||.||.||||||||||||||..||||||||||.||||||||.|||
RBAM_036090__ 194 CGAATACGGATAAAGACGTGCCGACTGTCGGTTTTCTGGCTCACGTGGAC 243
BSNT_05955___ 244 ACCGCTACAGACTTTACCGGCAAAAACGTGAATCCGCAAATCATCGAAAG 293
|||||.||.||.||||||||.|||||.||||||||.||.||.||.||.||
RBAM_036090__ 244 ACCGCGACCGATTTTACCGGAAAAAATGTGAATCCTCAGATTATTGAGAG 293
BSNT_05955___ 294 CTATGATGGAAAAGACATCGTTCTTAACGAAAAGCTGCAGGTCACCCTGT 343
|||.||.|||.|.||.||||||||.||.||.||.||..|.|||..|||||
RBAM_036090__ 294 CTACGACGGACATGATATCGTTCTGAATGACAAACTCAATGTCGTCCTGT 343
BSNT_05955___ 344 CACCTGATCAATTCCCTGAGCTGTCTGGCTATAAGGGCCATACACTCATC 393
|.|||||.||||||||.|||||.||..|||||||.|||||.||.||.|||
RBAM_036090__ 344 CGCCTGAGCAATTCCCGGAGCTCTCCCGCTATAAAGGCCAGACGCTGATC 393
BSNT_05955___ 394 ACCACAGACGGCACCACCCTTCTCGGCGCAGACAATAAGGCCGGTATCGC 443
||.|||||||||||.||.||.|||||.||.|||||.||.||.||.||.||
RBAM_036090__ 394 ACAACAGACGGCACGACGCTGCTCGGAGCCGACAACAAAGCGGGCATTGC 443
BSNT_05955___ 444 TGAAATCATGACAGCCATGGATTACCTCATCAAACACCCTGAAATCAAGC 493
|||||||||||||||.||||..|||.|.||||||||.||.||.|||||.|
RBAM_036090__ 444 TGAAATCATGACAGCAATGGCGTACTTGATCAAACATCCGGACATCAAAC 493
BSNT_05955___ 494 ACGGTACAATCAGAGTCGCCTTTACGCCTGATGAAGAAATCGGAAGAGGG 543
||||.||.|||.|.|||||.||.|||||.||||||||||||||.|||||.
RBAM_036090__ 494 ACGGAACGATCCGGGTCGCGTTCACGCCAGATGAAGAAATCGGCAGAGGC 543
BSNT_05955___ 544 CCGCACAAATTTGATGTGAAACGG----TTCAATGCTTCCTTTGCCTACA 589
||.||||||||.||||| ||| |||||.||..|.||.|||||||
RBAM_036090__ 544 CCTCACAAATTCGATGT----CGGCCGCTTCAACGCCGCATTCGCCTACA 589
BSNT_05955___ 590 CGGTTGACGGCGGGCCTCTCGGCGAGCTTGAATACGAAAGCTTCAATGCC 639
||.|.|||||.||.||.||||||||.||..||||.||||||||.||.||.
RBAM_036090__ 590 CGATAGACGGAGGCCCCCTCGGCGAACTGCAATATGAAAGCTTTAACGCA 639
BSNT_05955___ 640 GCTGCCGCAAAAATTACGATTAAAGGCAACAACGTACATCCCGGAACAGC 689
||.||||||||..||||...|.|.||.||.|.|||.||.||.|||||.||
RBAM_036090__ 640 GCAGCCGCAAAGCTTACTTGTTACGGAAAAAGCGTCCACCCGGGAACGGC 689
BSNT_05955___ 690 TAAAGGGAAAATGATCAACTCTGCGAAAATCGCGAT-GAAGCTGAACA-G 737
.|||...||||||.|||||.||.|.||||||||||| |||..|.|.|| |
RBAM_036090__ 690 GAAAAACAAAATGGTCAACGCTTCAAAAATCGCGATGGAATTTCATCACG 739
BSNT_05955___ 738 CCTGCTGCCGGCAGACGAAGCGCCTGAATATACGGAAGGCTATGAAGGCT 787
| |||||||..|||.||||||||.||||||||||||||.||||||||||
RBAM_036090__ 740 C--GCTGCCGAAAGAAGAAGCGCCGGAATATACGGAAGGGTATGAAGGCT 787
BSNT_05955___ 788 TCTACCACTTGCTGTCGATTCAAGGAGACGTAGAGGAAACAAAGCTCTAC 837
||||.||..|.||.||.||..|.||||||||....|||.|....||.|..
RBAM_036090__ 788 TCTATCATCTACTTTCCATGAACGGAGACGTTTCTGAAGCCGCCCTGTCG 837
BSNT_05955___ 838 TACATTATTAGAGACTTTGACAAAGAGA---ATTTCCAAAACAGAAAAGA 884
|||||.||.|||||||||||| ||||| .|||.||.||| |||||||
RBAM_036090__ 838 TACATCATCAGAGACTTTGAC--AGAGACCGCTTTGCAGAAC-GAAAAGA 884
BSNT_05955___ 885 AACAATG-----AAGCGTGCCGTTGAAGAACTTCAAAACG---------- 919
|...||| ||.| ||||.|| ||
RBAM_036090__ 885 ATATATGCAGAAAACC--GCCGATG-------------CGCTGGCGGCCA 919
BSNT_05955___ 920 AATACGGGCAA-GACCGGATTCTGCTGGATATGAAC-----GACCAATAC 963
||||| ||||| ||..|.||...||| ||||| ||.|||||.
RBAM_036090__ 920 AATAC-GGCAACGAAAGCATCAAGCT-----TGAACTGCGTGATCAATAT 963
BSNT_05955___ 964 TACAACATGAGAGAGAAAATTGAACCTGTCATCGAAATCGTCAACATTGC 1013
||||||||||||||.|||||.|||||.||||..||.||.|||.|..|.||
RBAM_036090__ 964 TACAACATGAGAGAAAAAATCGAACCGGTCAAAGAGATAGTCGATGTCGC 1013
BSNT_05955___ 1014 CAAGCAAGCAATGGAAAACCTCGGCATTGAACCGAAGATTTCCCCCATCC 1063
|.|.|||||.|||.|||||||||.|||.||.||||..||....||.||.|
RBAM_036090__ 1014 CTATCAAGCCATGAAAAACCTCGACATCGACCCGATTATCGAACCGATTC 1063
BSNT_05955___ 1064 GCGGCGGCACCGACGGATCGCAACTGTCCTACATGGGGCTTCCGACGCCA 1113
|.|||||.|||||||||||.||.||.||.|||||||||||.|||||.||.
RBAM_036090__ 1064 GGGGCGGAACCGACGGATCACAGCTCTCTTACATGGGGCTGCCGACACCG 1113
BSNT_05955___ 1114 AACATCTTTACAGGCGGGGAAAACTTCCACGGCAAATTTGAATACATCTC 1163
|||||.||.||.|||||..|||||||||||||.||||.|||||||||.||
RBAM_036090__ 1114 AACATTTTCACGGGCGGCCAAAACTTCCACGGAAAATATGAATACATTTC 1163
BSNT_05955___ 1164 AGTTGATAATATGGTCAAAGCCGTAAATGTCATCGTTGAGATTGCAAAGC 1213
.||.|||.||||||..||.||.|||||.|||||.|||||.||.||.|.||
RBAM_036090__ 1164 CGTCGATCATATGGAAAAGGCGGTAAACGTCATTGTTGAAATCGCCAGGC 1213
BSNT_05955___ 1214 AGTTTGAAGCGCAAGCCTAA 1233
..|||||||.||..||.|||
RBAM_036090__ 1214 TCTTTGAAGAGCGCGCTTAA 1233
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