Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05935 and RBAM_036020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:27
# Commandline: needle
# -asequence dna-align/BSNT_05935.1.9828.seq
# -bsequence dna-align/RBAM_036020___cimH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05935-RBAM_036020___cimH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05935-RBAM_036020___cimH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05935
# 2: RBAM_036020___cimH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1380
# Identity: 506/1380 (36.7%)
# Similarity: 506/1380 (36.7%)
# Gaps: 738/1380 (53.5%)
# Score: 1828.0
#
#
#=======================================
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 1 ATGGGAGAACTTCAACCAAAATTGCAAACGGATTCAATCCAAAAACAGGA 50
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 51 ACGGACTGATAACTGGTTTGCCAGAGCAATGAATATAAGAATCGGCATTA 100
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 101 TTCCTCTTCCTATCTATATCCTGCTTTTCTTGCTTATTACGGTGTTTGTC 150
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 151 ATGAGCCGTGATGTAAAAAGCGACATTCTGACATCAATTGCCGTCATGAG 200
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 201 TTTTTTCGGATTTACCTTCGGCCAGATCGGAAAATCCATTCCGATCGTGC 250
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 251 GGTCCATCGGCGGCCCTGCGATTCTCGCAACCTTTATTCCATCCGCTGTC 300
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 301 GTCTACTACCACCTGCTTCCGAAAGACATTATTACTTCAACAACAGAATT 350
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 351 CACGGAAAGCTCCAACTTTCTCTATCTATTTATTGCCGGTATCGTCGTCG 400
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 401 GCAGTATTCTCGGGATGAAAAGAGAGACGCTCGTCAAAGCTTTCGTCAAG 450
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 451 ATTTTTATTCCGCTGATCGCCGGCTCGATCGCGGCCGCCATCGTCGGCTT 500
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 501 ATGCGTCGGGACGCTGCTCGGGCTCGGCTTTCAGCACACACTGCTTTATA 550
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 551 TTGTCGTTCCGATTATGGCGGGGGGTGTCGGTGAAGGCGCGATTCCTTTA 600
BSNT_05935 0 -------------------------------------------------- 0
RBAM_036020__ 601 TCCATCGGCTACTCCGATATTATGCCGATGTCCCAGGGAGACGCCTTTGC 650
BSNT_05935 1 -------------------ATGCTGGGCAGCTTGTGCGCGATTATTCTAG 31
|||||.||||||.|||||||.|||||..||.
RBAM_036020__ 651 GCTTGTGCTGCCGTCCATCATGCTCGGCAGCCTGTGCGCCATTATGTTAT 700
BSNT_05935 32 CGGGATTGCTGAACCGAATCGGAAAGAAA---AAACCGGAATGGACAGGC 78
||||.||||||||....||||| |||| ||||||||||||||.|||
RBAM_036020__ 701 CGGGTTTGCTGAATGTCATCGG---GAAACGCAAACCGGAATGGACGGGC 747
BSNT_05935 79 AACGGCAAAGTGGA--------------CCGCTCCGAAGAAGAGTCCCCT 114
|||||.||.||.|| |||||||
RBAM_036020__ 748 AACGGGAAGGTTGATAAGTCTGATCATTCCGCTCC--------------- 782
BSNT_05935 115 GCGC--TGGAGGAATCACAAAGCGGACAGCAAATGTTCAACCTTT----- 157
||| |||| ||| |.|.||.||||.|.||.|.||
RBAM_036020__ 783 -CGCATTGGA------ACA-----GCCGGCCAATGATAAAACGTTTGATT 820
BSNT_05935 158 ----CTTTATTTGCGGCAGGCGGTATCCTTGCTGTTTCTTTATACTTAGT 203
|||| ||.||..|.||||||||..|.||.|||||..|.||.||.||
RBAM_036020__ 821 TGTCCTTT-TTCGCTTCGGGCGGTATTTTAGCGGTTTCCCTCTATTTGGT 869
BSNT_05935 204 CGGCATGCTCGCTCACGATTT-TTTCGGTTTTCCGGCACCCGTTGCCATG 252
|||||||||.||.||.||||| ||||.| .|||||||.||.||.|..|||
RBAM_036020__ 870 CGGCATGCTGGCGCATGATTTCTTTCAG-CTTCCGGCTCCTGTCGTGATG 918
BSNT_05935 253 CTGTTACTGGCTGTTCTAATCAAGCTGTTCAGATTGGTGCCTGCCTCAAT 302
||..|.||.||.|||||.||.|||||||||||..|||.|||.||.|||||
RBAM_036020__ 919 CTCGTCCTTGCCGTTCTCATTAAGCTGTTCAGGCTGGCGCCGGCTTCAAT 968
BSNT_05935 303 TGAAAATGGCGCGTTTGGAGTGTCCCGCTTCTTTTCAACAGCTGTGACCT 352
||||||.||.||.||.||.||.||.|||||.||.||.|||||.|||||||
RBAM_036020__ 969 TGAAAACGGAGCCTTCGGCGTCTCGCGCTTTTTCTCGACAGCCGTGACCT 1018
BSNT_05935 353 ACCCGCTTCTCTTTGCGATTGGGGTATCCATGACGCCGTGGGACAAGCTT 402
|.|||||..|.||||||||.||.||.||.|||||.||||||||||||||.
RBAM_036020__ 1019 ATCCGCTCTTATTTGCGATCGGCGTTTCAATGACACCGTGGGACAAGCTG 1068
BSNT_05935 403 GTCGCCGCTTTTAACCTCAGCAATATTATTACGATTCTGTCTGTCGTTGT 452
.|.||.||.||||...|||||||.||.|||||.|||.|.||..||||.||
RBAM_036020__ 1069 ATTGCGGCGTTTACGATCAGCAACATCATTACCATTTTATCAATCGTCGT 1118
BSNT_05935 453 GACCATGATGGCCGTTGGCTTCTTCACTGGAAAATGGCTGAACATGTATC 502
.||.|||||||||||.||.||..|.||.||||||||||||||..||||.|
RBAM_036020__ 1119 CACGATGATGGCCGTCGGTTTTCTGACCGGAAAATGGCTGAATCTGTACC 1168
BSNT_05935 503 CGATTGAAACCGCCATTATCAATGCGTGCCATTCTGGACAAGGCGGCACC 552
|||||||.||.||.|||||.|||||.||||||||.||.||.|||||||||
RBAM_036020__ 1169 CGATTGAGACGGCGATTATTAATGCCTGCCATTCCGGCCAGGGCGGCACC 1218
BSNT_05935 553 GGAGACGTCGCTATTTTAAGCGCGGCGGAAAGGCTTGAGTTGATGCCGTT 602
||.||||||||.||.||.|||||.||.|||.||||||||.|.||||||||
RBAM_036020__ 1219 GGCGACGTCGCGATCTTGAGCGCCGCTGAACGGCTTGAGCTTATGCCGTT 1268
BSNT_05935 603 CGCCCAGGTATCTACCCGCATCGGGGGCGCGATCAC----AGTGTCCTTA 648
||||||.||.||.|||.|.|||||.||.|||||.|| ||||||
RBAM_036020__ 1269 CGCCCAAGTGTCGACCAGAATCGGCGGAGCGATTACCGTGAGTGTC---- 1314
BSNT_05935 649 ACCTTATTGCTGCTTCACCAGTTTTATTGA 678
|||.|..||||||||||.||.||.||||.|
RBAM_036020__ 1315 ACCCTTCTGCTGCTTCATCAATTCTATTAA 1344
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