Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05932 and RBAM_036010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:27
# Commandline: needle
# -asequence dna-align/BSNT_05932___cydA.1.9828.seq
# -bsequence dna-align/RBAM_036010___cydA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05932___cydA-RBAM_036010___cydA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05932___cydA-RBAM_036010___cydA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05932___cydA
# 2: RBAM_036010___cydA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1412
# Identity: 1159/1412 (82.1%)
# Similarity: 1159/1412 (82.1%)
# Gaps: 10/1412 ( 0.7%)
# Score: 4742.0
#
#
#=======================================
BSNT_05932___ 1 ATGAGTGAATTGGTATTAGCCCGCATACAATTTGCATCAACAACGTTGTT 50
||||||||.|||||||||||||||||.|||||||||||.|||||.|||||
RBAM_036010__ 1 ATGAGTGAGTTGGTATTAGCCCGCATTCAATTTGCATCTACAACATTGTT 50
BSNT_05932___ 51 TCACTTCTTGTTTGTGCCGATGTCTATCGGGCTTGTGTTTATGGTTGCGT 100
||||||||||||||||||..||||||||||||||||||||||||||||.|
RBAM_036010__ 51 TCACTTCTTGTTTGTGCCTTTGTCTATCGGGCTTGTGTTTATGGTTGCTT 100
BSNT_05932___ 101 TGATGGAGACTCTTTATCTTGTAAAGAAAAATGAGCTGTATCTCAAAATG 150
||||||||||.||||||.||||.||.|||.|.|||...||||||||||||
RBAM_036010__ 101 TGATGGAGACGCTTTATGTTGTCAAAAAACAAGAGACCTATCTCAAAATG 150
BSNT_05932___ 151 GCAAAGTTTTGGGGACACTTATTCTTAATAAATTTCGCAGTCGGTGTTGT 200
||.||.||||||||.||..|.||.|||||.||.|||||.|||||.||.||
RBAM_036010__ 151 GCTAAATTTTGGGGGCATCTCTTTTTAATTAACTTCGCTGTCGGCGTCGT 200
BSNT_05932___ 201 AACGGGGATTTTGCAAGAATTCCAGTTTGGACTGAACTGGTCTGATTACT 250
.||.||||||.|.||.|||||||||||.|||.||||||||||||||||.|
RBAM_036010__ 201 CACAGGGATTCTTCAGGAATTCCAGTTCGGATTGAACTGGTCTGATTATT 250
BSNT_05932___ 251 CCCGTTTTGTCGGAGATGTATTTGGCGCTCCCCTTGCGATTGAAGCATTA 300
||||||||||||||||.||||||||.|||||.||||||.|||||||..|.
RBAM_036010__ 251 CCCGTTTTGTCGGAGACGTATTTGGAGCTCCGCTTGCGGTTGAAGCGCTT 300
BSNT_05932___ 301 TTGGCGTTTTTCATGGAATCTATTTTTATCGGATTATGGATTTTTGGCTG 350
|||||||||||.|||||.||||||||||||||||||||||||||.|||||
RBAM_036010__ 301 TTGGCGTTTTTTATGGAGTCTATTTTTATCGGATTATGGATTTTCGGCTG 350
BSNT_05932___ 351 GGACCGCCTGCCGAAGAAAATTCACGCTCTCTGCATATGGCTCGTATCAT 400
||||||..|..|.||.|||.|.||....||.|||||.|||||.||.||.|
RBAM_036010__ 351 GGACCGTTTATCTAAAAAAGTGCATTTGCTTTGCATTTGGCTTGTGTCCT 400
BSNT_05932___ 401 TCGGAACGATCATGTCATCTTTCTGGATTTTAACAGCAAACTCCTTTATG 450
||||||||||.||||||||||||||||||||.||.||||||||.||.|||
RBAM_036010__ 401 TCGGAACGATTATGTCATCTTTCTGGATTTTGACGGCAAACTCATTCATG 450
BSNT_05932___ 451 CAGGAGCCGGTCGGTTTTACGATCAAAAACGGCCGCGCGGAAATGAATGA 500
||||||||||||||.|||.||||.||||||||||||||||||||||||||
RBAM_036010__ 451 CAGGAGCCGGTCGGCTTTGCGATTAAAAACGGCCGCGCGGAAATGAATGA 500
BSNT_05932___ 501 TTTTGGCGCGTTGATTACAAACCCTCAGCTTTGGGTTGAATTCCCGCACG 550
|||.||.|||.|..|.||||||||||||||||||||||||||.||.||||
RBAM_036010__ 501 TTTCGGGGCGCTTTTGACAAACCCTCAGCTTTGGGTTGAATTTCCTCACG 550
BSNT_05932___ 551 TTATTTTCGGTGCGCTTGCCACTGGAGCTTTCTTTATTGCCGGAGTGAGT 600
|.||||||||.||||||||.||.||.|||||||||||.|||||.||.||.
RBAM_036010__ 551 TCATTTTCGGGGCGCTTGCGACGGGTGCTTTCTTTATCGCCGGTGTCAGC 600
BSNT_05932___ 601 GCTTTTAAACTGCTGAAGAAAAAAGAAGTGCCGTTCTTTAAGCAATCTTT 650
||.||||||.|..|||||||||||||||||||.|||||..|..|||||||
RBAM_036010__ 601 GCATTTAAATTATTGAAGAAAAAAGAAGTGCCTTTCTTCCATAAATCTTT 650
BSNT_05932___ 651 TAAACTCGCAATGATCGTCGGCCTTTGTGCCGGTCTTGGCGTCGGCCTT- 699
.||.||..|.|||||.|||||.||....||||||.|.||||| .||.||
RBAM_036010__ 651 CAAGCTTTCGATGATTGTCGGTCTGATCGCCGGTATCGGCGT-TGCGTTC 699
BSNT_05932___ 700 AGCGGACACATGCAGGCTGAGCACTTGATGGAATCACAGCCGATGAAAAT 749
||||||||.||||||||||||||.||.||||||||.||||||||||||||
RBAM_036010__ 700 AGCGGACATATGCAGGCTGAGCATTTAATGGAATCGCAGCCGATGAAAAT 749
BSNT_05932___ 750 GGCTGCCAGTGAAGGTCTATGGGAAGACAGCGGTGACCCTGCTGCTTGGA 799
||||||||||||||..||.|||||.|||||||||||.|||||.||.||||
RBAM_036010__ 750 GGCTGCCAGTGAAGCGCTTTGGGATGACAGCGGTGATCCTGCCGCGTGGA 799
BSNT_05932___ 800 CCGCTTTTGCGACGATCGATACAAAAAATGAAAAAAGCTCAAATGAAA-- 847
|.||||||||||..||.|||||.||.||.|||||||.|.||...||||
RBAM_036010__ 800 CGGCTTTTGCGAATATTGATACGAATAAAGAAAAAAACACATCAGAAATT 849
BSNT_05932___ 848 TCAAAGTTCCTTATGCCTTGAGCTACTTGGCTTATCAGAAATTCAGCGGA 897
|||| |||||||.||..||||||||||||||||.|||||.||||||||.
RBAM_036010__ 850 TCAA--TTCCTTACGCACTGAGCTACTTGGCTTACCAGAAGTTCAGCGGC 897
BSNT_05932___ 898 AGTGTCAAAGGGATGAAAACCCTTCAGGCTGAGTACGAAAAAATATACGG 947
|||||.||||||||||||||.|||||....||.||||||||||..|||||
RBAM_036010__ 898 AGTGTGAAAGGGATGAAAACACTTCAAAAAGAATACGAAAAAACGTACGG 947
BSNT_05932___ 948 AAAAGGCGACTACATTCCGCCAGTGAAAACGACATTCTGGAGCTTCCGCA 997
||||||||||||.||.|||||.||.||||||||.||||||||.|||||||
RBAM_036010__ 948 AAAAGGCGACTATATCCCGCCTGTTAAAACGACGTTCTGGAGTTTCCGCA 997
BSNT_05932___ 998 TCATGGTAGGAGCAGGTGTTGTCATGATTCTTGCTGCGTTAGGCGGCCTT 1047
|.||||..|||||.||.|...|.|||||..||||.|||.|.|.||| |||
RBAM_036010__ 998 TTATGGCGGGAGCGGGCGCGCTTATGATATTTGCCGCGATTGCCGG-CTT 1046
BSNT_05932___ 1048 TGGT-TAAACCGCCGCAAAAAGCTTGAAAACAGCAAATGGTATTTGCGCA 1096
|..| |.||||||||||||||.|||.|.|..|||||.||||||||.||..
RBAM_036010__ 1047 TATTCTGAACCGCCGCAAAAAACTTCATACGAGCAAGTGGTATTTACGGG 1096
BSNT_05932___ 1097 TCATGATCGCGTTGATTTCCTTCCCGTTTCTTGCGAACTCCGCGGGCTGG 1146
.|||||||||..|||||.|.||.||.||..||||||||||.||.||.|||
RBAM_036010__ 1097 GCATGATCGCACTGATTGCATTTCCATTCATTGCGAACTCTGCCGGTTGG 1146
BSNT_05932___ 1147 ATTATGACAGAAATCGGACGTCAGCCTTGGACGGTTATGGGGTTAATGAC 1196
||||||||.|||||||||||.|||||.||||||||.|||||...|.||||
RBAM_036010__ 1147 ATTATGACTGAAATCGGACGCCAGCCGTGGACGGTCATGGGACAATTGAC 1196
BSNT_05932___ 1197 AACCGCTCAATCTGTGTCACCTAACGTAACAGCGGGCTCCTTGTTATTCT 1246
.|||||.|||||.||.||.|||||||||||..||||.||..||.|.||.|
RBAM_036010__ 1197 GACCGCACAATCCGTTTCTCCTAACGTAACGACGGGATCTCTGCTGTTTT 1246
BSNT_05932___ 1247 CAATCATC-GCATTCGGTGTGATGTACATGATTCTTGGTGCACTGCTTGT 1295
||||.||| || |||||.||.||||||.|||||.|.||.||.||||||||
RBAM_036010__ 1247 CAATTATCAGC-TTCGGCGTCATGTACTTGATTTTAGGCGCGCTGCTTGT 1295
BSNT_05932___ 1296 CTTCTTGTTTATCCGTGAGATTAAAAAAGGTGCGGAGCATAGTGATCATC 1345
.|||.|.||..|.|||||.|||||||||||||||||.|||..|||||||.
RBAM_036010__ 1296 TTTCCTATTCGTTCGTGAAATTAAAAAAGGTGCGGACCATGATGATCATA 1345
BSNT_05932___ 1346 ATGATGTTCCTGTATCAACAGATCCATTTAGTCAGGAGGTATACCATGGC 1395
|.|||||||||||||||||.|||||.||.|||||||||||.||||||||.
RBAM_036010__ 1346 AGGATGTTCCTGTATCAACGGATCCGTTCAGTCAGGAGGTCTACCATGGG 1395
BSNT_05932___ 1396 ATCTCTTCATGA 1407
.||.||||||||
RBAM_036010__ 1396 GTCACTTCATGA 1407
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