Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05931 and RBAM_036000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:26
# Commandline: needle
# -asequence dna-align/BSNT_05931___cydB.1.9828.seq
# -bsequence dna-align/RBAM_036000___cydB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05931___cydB-RBAM_036000___cydB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05931___cydB-RBAM_036000___cydB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05931___cydB
# 2: RBAM_036000___cydB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1027
# Identity: 815/1027 (79.4%)
# Similarity: 815/1027 (79.4%)
# Gaps: 20/1027 ( 1.9%)
# Score: 3211.5
#
#
#=======================================
BSNT_05931___ 1 ATGGCATCTCTTCATGATCTTTGGTTTATACTCGTTGCTGTATTGTTTGT 50
||||..||.|||||||||||||||||||||||||||.|.||.||||||||
RBAM_036000__ 1 ATGGGGTCACTTCATGATCTTTGGTTTATACTCGTTTCAGTTTTGTTTGT 50
BSNT_05931___ 51 AGGATTCTTCTTTTTGGAGGGCTTTGATTTCGGGGTCGGCATGGCGACCC 100
.|||||.||||||||.|||||.|||||.|||||.||||||||..||||||
RBAM_036000__ 51 CGGATTTTTCTTTTTAGAGGGTTTTGACTTCGGTGTCGGCATTTCGACCC 100
BSNT_05931___ 101 GTTTTCTTGGCCATAATGAATTAGAACGCAGAGTGCTGATCAACACGATC 150
|.||||||||||||||||||||||||||||||||||||.|.|||||.|||
RBAM_036000__ 101 GATTTCTTGGCCATAATGAATTAGAACGCAGAGTGCTGGTTAACACCATC 150
BSNT_05931___ 151 GGGCCGTTCTGGGACGCGAATGAAGTGTGGCTTTTGACTGGCGCAGGCGC 200
||.|||||||||||.||||||||.|||||||||.|.||.||..|.||.||
RBAM_036000__ 151 GGCCCGTTCTGGGATGCGAATGAGGTGTGGCTTATCACAGGTACGGGAGC 200
BSNT_05931___ 201 CATTTTCGCGGCATTCCCAAACTGGTATGCAACGATGCTGAGCGGTTATT 250
.||.||||||||||||||.|||||||||||.||||||||||||||.||||
RBAM_036000__ 201 GATCTTCGCGGCATTCCCGAACTGGTATGCGACGATGCTGAGCGGATATT 250
BSNT_05931___ 251 ACATTCCGTTTGTCATAGTGCTGCTTGCGTTAATGGGCCGCGGGGTCGCG 300
|||||||||||.||||..|.||.|||||.||.|||||.|||||.||.||.
RBAM_036000__ 251 ACATTCCGTTTATCATCATTCTTCTTGCCTTGATGGGGCGCGGCGTGGCA 300
BSNT_05931___ 301 TTTGAGTTCCGCGGCAAGGTGGATCATTTAAAATGGGTAAAGGTTTGGGA 350
|||||.|||||||||.|.|||.||.||.|.||||||||.||....|||||
RBAM_036000__ 301 TTTGAATTCCGCGGCCAAGTGAATAATCTGAAATGGGTCAAAACATGGGA 350
BSNT_05931___ 351 CTGGGTCGTTTTCTTCGGCAGTCTGATTCCTCCGTTTGTGCTTGGTGTGC 400
||||||..|||||||||||||.||.||.||.||.|||||..|.||..|..
RBAM_036000__ 351 CTGGGTGATTTTCTTCGGCAGCCTTATCCCGCCATTTGTATTCGGACTTA 400
BSNT_05931___ 401 TGTTCACGACATTATTCCGCGGGATGCCGATTGATGCCGAC--ATGAACA 448
|.|||||.|..||.||||||||..|||||||||| |.||| |||||||
RBAM_036000__ 401 TTTTCACAAGCTTGTTCCGCGGTGTGCCGATTGA--CGGACATATGAACA 448
BSNT_05931___ 449 TTCACGCACATGTATCTGATTATATCAATGTATATTCTATACTTGGCGGT 498
||||||||..|.|.||.|||..|.|.||.||.|||||..|.|||||||||
RBAM_036000__ 449 TTCACGCAGGTTTTTCAGATATTGTGAACGTGTATTCCGTTCTTGGCGGT 498
BSNT_05931___ 499 GTGACGGTAACACTTCTTTGCTTCCAGCATGGATTAATGTTTATCACGCT 548
|.|.|.||.||.|||||||..||||.|||.||.||||||||||||||.||
RBAM_036000__ 499 GCGGCCGTCACCCTTCTTTCATTCCTGCACGGTTTAATGTTTATCACCCT 548
BSNT_05931___ 549 GCGTACGATTGGTGATTTGCAAAACCGCGCCCGGAAAATGGCGCAAAA-- 596
|||.|||||.||||||||.|||.|.||.||..|.|||||| ||||||
RBAM_036000__ 549 GCGCACGATCGGTGATTTACAAGAGCGTGCGAGAAAAATG--GCAAAACG 596
BSNT_05931___ 597 -GATAATGGGTGTTGTTTTTGTAGCGGTTCTTGCCTTCGCGGCCCTTTCT 645
| ||||.||||||.|.|||.|.|..||.|||||.|||...||..|.|||
RBAM_036000__ 597 CG-TAATCGGTGTTATCTTTCTTGTTGTACTTGCTTTCTTTGCGATGTCT 645
BSNT_05931___ 646 GCGTATCAGACAGACATGTTTACACGCCGCGGC-GAGATTACCATTCCGC 694
||.||..|.||.||.|||||||||||||| ||| .|.||.||.||||||.
RBAM_036000__ 646 GCATACGATACGGATATGTTTACACGCCG-GGCAAACATCACGATTCCGG 694
BSNT_05931___ 695 TCGCTGTTTTGATTGTCATCTGC----TTTATGCTCGCGGCTGTATTTAT 740
|....||..|||||||||||||| || ||.||...|||.||.||
RBAM_036000__ 695 TATTCGTGCTGATTGTCATCTGCAACGTT----CTTGCCATTGTGTTCAT 740
BSNT_05931___ 741 TCGTAAGAAAAAAGACGGCTGGACATTTGGGATGACAGGCGCTGGTCTGG 790
..|.||||||||||||||||||.||||.||.|||||.|||||.|||||.|
RBAM_036000__ 741 GAGCAAGAAAAAAGACGGCTGGGCATTCGGTATGACCGGCGCGGGTCTTG 790
BSNT_05931___ 791 CGCTGACCGTGGGAATGATCTTTATTTCCCTATTCCCTCGCGTAATGGTC 840
|..||||.||.|..|||||.|||||.||.||.|||||.|||||.||||||
RBAM_036000__ 791 CTTTGACAGTTGCGATGATTTTTATCTCTCTGTTCCCGCGCGTCATGGTC 840
BSNT_05931___ 841 AGCTCGCTTCATAGCGCATACGATTTAACAGTAGCTAACGCTTCTTCCGG 890
||||||||..|.|||||.||.||.|||||||||||||||||.||||||||
RBAM_036000__ 841 AGCTCGCTGAAAAGCGCGTATGACTTAACAGTAGCTAACGCGTCTTCCGG 890
BSNT_05931___ 891 AGATTATTCGCTTAAAGTCATGTCAATTGCAGCATTAACGCTATTGCCGT 940
.||||||||.|||||.||||||.||||||..|||.|.||.||..||||||
RBAM_036000__ 891 TGATTATTCACTTAAGGTCATGACAATTGTCGCACTGACTCTGCTGCCGT 940
BSNT_05931___ 941 TCGTCATCGGCAGCCAGATCTGGAGCTATTATGTCTTCCGGAAGCGCGTC 990
|.|||||||||||.|||||||||||||||||||||||||||||.||||||
RBAM_036000__ 941 TTGTCATCGGCAGTCAGATCTGGAGCTATTATGTCTTCCGGAAACGCGTC 990
BSNT_05931___ 991 AGCCATAAGGAGCCTATGACTTATTAA 1017
|||||||||||||||||||||||||||
RBAM_036000__ 991 AGCCATAAGGAGCCTATGACTTATTAA 1017
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