Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01013 and RBAM_035930

See Amino acid alignment / Visit BSNT_01013 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_01013___ydhT.1.9828.seq
#    -bsequence dna-align/RBAM_035930___ydhT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01013___ydhT-RBAM_035930___ydhT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01013___ydhT-RBAM_035930___ydhT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01013___ydhT
# 2: RBAM_035930___ydhT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1139
# Identity:     777/1139 (68.2%)
# Similarity:   777/1139 (68.2%)
# Gaps:         106/1139 ( 9.3%)
# Score: 2611.0
# 
#
#=======================================

BSNT_01013___      1 TTGTTTAAGAAACATACGATCTCTTTGCTCA-----TTATATTTTTACTT     45
                                             .||||||     |||           
RBAM_035930__      1 ------------------------ATGCTCAAAAAGTTA-----------     15

BSNT_01013___     46 GC-GTCTGC--------TGTTTTA---------------GCAAAACCAAT     71
                     || ||||||        .||||||               ||.|..||.||
RBAM_035930__     16 GCAGTCTGCCTGTCTATCGTTTTATTACTCTTAGGAGCCGCCAGTCCGAT     65

BSNT_01013___     72 TGAAGCGCATACTGTGTCGCCTGTGAATCCTAATGCCCAGCAGACAACAA    121
                     ....||.||.||.||.|..||.||.||.||.||||||||||||||.||||
RBAM_035930__     66 ATCGGCTCACACCGTTTATCCCGTTAACCCAAATGCCCAGCAGACGACAA    115

BSNT_01013___    122 AAGCAGTGATGAACTGGCTTGCGCACCTGCCGAACCGAACGGAAAACAGA    171
                     |||...|.|||||||||||.|||||||||||.|||||..|.||||||||.
RBAM_035930__    116 AAGATATCATGAACTGGCTGGCGCACCTGCCCAACCGTTCAGAAAACAGG    165

BSNT_01013___    172 GTCCTTTCCGGAGCGTTCGGAGGTTACAGTCATGACACATTTTCTATGGC    221
                     |||.|.|||||.||||||||.||.|||||..|||.|||.|||||.|||.|
RBAM_035930__    166 GTCATGTCCGGGGCGTTCGGCGGGTACAGCGATGTCACTTTTTCAATGAC    215

BSNT_01013___    222 TGAGG----CTGATAGAATCCGAAGCGCCACCGGGCAATCGCCTGCTATT    267
                     .||||    |.|.|.|||    ||.|||.||.||.||.||.||.||.||.
RBAM_035930__    216 AGAGGAAAACCGCTTGAA----AAACGCGACGGGACAGTCTCCCGCCATC    261

BSNT_01013___    268 TACGGCTGCGATTATGCCAGAGGGTGGCTTGAAACAGCTAAAATTGAAGA    317
                     ||||||||.||.||||..|||||.||||||||||||||..|.||....||
RBAM_035930__    262 TACGGCTGTGACTATGGGAGAGGATGGCTTGAAACAGCGGATATCACCGA    311

BSNT_01013___    318 TTCAATAGATGTA-AGCTGCAACGGTGATTTAATGTCGTATTGGAAAAAT    366
                     |||.||.||| || |||||||||.|....|||||.||.||.|||||||..
RBAM_035930__    312 TTCTATCGAT-TACAGCTGCAACAGCAGCTTAATCTCATACTGGAAAAGC    360

BSNT_01013___    367 GGCGGAATTCCGCAAATCAGTTTGCACCTGGCGAACCCTGCTTTTCAGTC    416
                     |||||..|.||.||..||||..||||.||.||.||.||.|||||||..||
RBAM_035930__    361 GGCGGCCTCCCTCAGGTCAGCCTGCATCTCGCAAATCCGGCTTTTCCATC    410

BSNT_01013___    417 AGGGCATTTTAAAACACCGATTACAAACGATCAGTATAAAAAAATACTAG    466
                     .||..|.|.||||||..|.||..|||||...|||||.|||||.||.||.|
RBAM_035930__    411 CGGAAACTATAAAACGGCCATCTCAAACAGCCAGTACAAAAACATCCTGG    460

BSNT_01013___    467 ATTCTTCAACAGCAGAAGGAAAACGGCTAAATGCCATGCTCAGCAAAATT    516
                     |..|||||||.|..||||||||||||||..|.||..|||||||||||||.
RBAM_035930__    461 ACCCTTCAACTGTTGAAGGAAAACGGCTGGAGGCGCTGCTCAGCAAAATC    510

BSNT_01013___    517 GCTGACGGACTTCAAGAGCTGGAGAACCAAGGTGTGCCTGTTCTGTTCAG    566
                     ||.|||||.|||....|||||.|.||.|||||.||..|.|||||||||||
RBAM_035930__    511 GCCGACGGCCTTACTCAGCTGAAAAATCAAGGCGTCACCGTTCTGTTCAG    560

BSNT_01013___    567 GCCGCTGCATGAAATGAACGGCGAATGGTTTTGGTGGGGACTTACATCAT    616
                     .|||||||||||||||||||||||.|||||.||||||||.||.|||...|
RBAM_035930__    561 ACCGCTGCATGAAATGAACGGCGAGTGGTTCTGGTGGGGGCTGACAGGCT    610

BSNT_01013___    617 ATAACCAAAAGGATAATGAAAGAATCTCTCTATATAAACAGCTCTACAAG    666
                     |.||||||||.||.|||||.||||||||.||.||.|||.||||.||||||
RBAM_035930__    611 ACAACCAAAAAGACAATGAGAGAATCTCGCTGTACAAAGAGCTTTACAAG    660

BSNT_01013___    667 AAAATCTATCATTATATGACCGACACAAGAGGACTTGAT---CATTTGAT    713
                     ||.||.||.|..||||||||.||.|||||||||.|.|||   |.||||  
RBAM_035930__    661 AAGATATACCGCTATATGACAGAGACAAGAGGATTGGATAACCTTTTG--    708

BSNT_01013___    714 TTGGGTTTACTCTCCCGACGCCAACCGAGATTTTAAAACTGATTTTTACC    763
                      |||||.||.||.||.||.||||||.||||.||||||||.||.|||||||
RBAM_035930__    709 -TGGGTGTATTCGCCGGATGCCAACAGAGACTTTAAAACAGACTTTTACC    757

BSNT_01013___    764 CGGGCGCGTCTTACGTGGATATTGTCGGATTAGATGCGTATTTTCA-AGA    812
                     |.|||.|.|||||.|||||||||..|||..|.||.||.|| .|||| .||
RBAM_035930__    758 CAGGCTCATCTTATGTGGATATTACCGGTCTGGACGCTTA-CTTCACTGA    806

BSNT_01013___    813 TGCCTACTCGATCAAT--GGATACGATCA---GCTAACAG-CGCTTAATA    856
                     |.|.||..||||  ||  ||.||.|||.|   |||    | |.||.||.|
RBAM_035930__    807 TCCGTATGCGAT--ATCAGGCTATGATGAAATGCT----GTCTCTGAAAA    850

BSNT_01013___    857 AACCATTTGCTTTTACAGAA----GTCGGCCCGCAAACAGCAAACGGCAG    902
                     ||||.|||||.|||.|.|||    |||.|.|||..||    .|.|||.||
RBAM_035930__    851 AACCGTTTGCCTTTGCCGAAACCGGTCCGTCCGGTAA----TATCGGAAG    896

BSNT_01013___    903 CTTCGATTA--CAGCCTGTTCATCAATGCTGTAAAACAAAAATATCCTAA    950
                     |||.|||||  |.||  .||.||||||||..|.|..|||||.|||||..|
RBAM_035930__    897 CTTTGATTATGCTGC--TTTTATCAATGCGATCAGGCAAAAGTATCCCGA    944

BSNT_01013___    951 AACCATTTACTTTCTGGCATGGAATGATGAATGGAGCCCAGCTGTAAACA   1000
                     .||||..||||||.||.|||||.||||..|||..||.||.||.|..|||.
RBAM_035930__    945 GACCACGTACTTTTTGACATGGGATGAACAATTAAGTCCGGCGGCCAACC    994

BSNT_01013___   1001 AGGGTGCTTCGGCTTTATATCATGACAGCTGGACACTCAATAAGGGAGAA   1050
                     ..||.||...|||..|.|||||..||||||||||.||.||.|||||.|||
RBAM_035930__    995 TAGGCGCGCAGGCCCTTTATCAAAACAGCTGGACGCTGAACAAGGGCGAA   1044

BSNT_01013___   1051 ATATGGAACGGCGATTCTTTAACGCCAATCGTTGAATGA   1089
                     |||||||||||||..||.||.|||||.||||..||||.|
RBAM_035930__   1045 ATATGGAACGGCGGGTCCTTGACGCCGATCGCGGAATAA   1083


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