Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01013 and RBAM_035930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_01013___ydhT.1.9828.seq
# -bsequence dna-align/RBAM_035930___ydhT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01013___ydhT-RBAM_035930___ydhT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01013___ydhT-RBAM_035930___ydhT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01013___ydhT
# 2: RBAM_035930___ydhT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1139
# Identity: 777/1139 (68.2%)
# Similarity: 777/1139 (68.2%)
# Gaps: 106/1139 ( 9.3%)
# Score: 2611.0
#
#
#=======================================
BSNT_01013___ 1 TTGTTTAAGAAACATACGATCTCTTTGCTCA-----TTATATTTTTACTT 45
.|||||| |||
RBAM_035930__ 1 ------------------------ATGCTCAAAAAGTTA----------- 15
BSNT_01013___ 46 GC-GTCTGC--------TGTTTTA---------------GCAAAACCAAT 71
|| |||||| .|||||| ||.|..||.||
RBAM_035930__ 16 GCAGTCTGCCTGTCTATCGTTTTATTACTCTTAGGAGCCGCCAGTCCGAT 65
BSNT_01013___ 72 TGAAGCGCATACTGTGTCGCCTGTGAATCCTAATGCCCAGCAGACAACAA 121
....||.||.||.||.|..||.||.||.||.||||||||||||||.||||
RBAM_035930__ 66 ATCGGCTCACACCGTTTATCCCGTTAACCCAAATGCCCAGCAGACGACAA 115
BSNT_01013___ 122 AAGCAGTGATGAACTGGCTTGCGCACCTGCCGAACCGAACGGAAAACAGA 171
|||...|.|||||||||||.|||||||||||.|||||..|.||||||||.
RBAM_035930__ 116 AAGATATCATGAACTGGCTGGCGCACCTGCCCAACCGTTCAGAAAACAGG 165
BSNT_01013___ 172 GTCCTTTCCGGAGCGTTCGGAGGTTACAGTCATGACACATTTTCTATGGC 221
|||.|.|||||.||||||||.||.|||||..|||.|||.|||||.|||.|
RBAM_035930__ 166 GTCATGTCCGGGGCGTTCGGCGGGTACAGCGATGTCACTTTTTCAATGAC 215
BSNT_01013___ 222 TGAGG----CTGATAGAATCCGAAGCGCCACCGGGCAATCGCCTGCTATT 267
.|||| |.|.|.||| ||.|||.||.||.||.||.||.||.||.
RBAM_035930__ 216 AGAGGAAAACCGCTTGAA----AAACGCGACGGGACAGTCTCCCGCCATC 261
BSNT_01013___ 268 TACGGCTGCGATTATGCCAGAGGGTGGCTTGAAACAGCTAAAATTGAAGA 317
||||||||.||.||||..|||||.||||||||||||||..|.||....||
RBAM_035930__ 262 TACGGCTGTGACTATGGGAGAGGATGGCTTGAAACAGCGGATATCACCGA 311
BSNT_01013___ 318 TTCAATAGATGTA-AGCTGCAACGGTGATTTAATGTCGTATTGGAAAAAT 366
|||.||.||| || |||||||||.|....|||||.||.||.|||||||..
RBAM_035930__ 312 TTCTATCGAT-TACAGCTGCAACAGCAGCTTAATCTCATACTGGAAAAGC 360
BSNT_01013___ 367 GGCGGAATTCCGCAAATCAGTTTGCACCTGGCGAACCCTGCTTTTCAGTC 416
|||||..|.||.||..||||..||||.||.||.||.||.|||||||..||
RBAM_035930__ 361 GGCGGCCTCCCTCAGGTCAGCCTGCATCTCGCAAATCCGGCTTTTCCATC 410
BSNT_01013___ 417 AGGGCATTTTAAAACACCGATTACAAACGATCAGTATAAAAAAATACTAG 466
.||..|.|.||||||..|.||..|||||...|||||.|||||.||.||.|
RBAM_035930__ 411 CGGAAACTATAAAACGGCCATCTCAAACAGCCAGTACAAAAACATCCTGG 460
BSNT_01013___ 467 ATTCTTCAACAGCAGAAGGAAAACGGCTAAATGCCATGCTCAGCAAAATT 516
|..|||||||.|..||||||||||||||..|.||..|||||||||||||.
RBAM_035930__ 461 ACCCTTCAACTGTTGAAGGAAAACGGCTGGAGGCGCTGCTCAGCAAAATC 510
BSNT_01013___ 517 GCTGACGGACTTCAAGAGCTGGAGAACCAAGGTGTGCCTGTTCTGTTCAG 566
||.|||||.|||....|||||.|.||.|||||.||..|.|||||||||||
RBAM_035930__ 511 GCCGACGGCCTTACTCAGCTGAAAAATCAAGGCGTCACCGTTCTGTTCAG 560
BSNT_01013___ 567 GCCGCTGCATGAAATGAACGGCGAATGGTTTTGGTGGGGACTTACATCAT 616
.|||||||||||||||||||||||.|||||.||||||||.||.|||...|
RBAM_035930__ 561 ACCGCTGCATGAAATGAACGGCGAGTGGTTCTGGTGGGGGCTGACAGGCT 610
BSNT_01013___ 617 ATAACCAAAAGGATAATGAAAGAATCTCTCTATATAAACAGCTCTACAAG 666
|.||||||||.||.|||||.||||||||.||.||.|||.||||.||||||
RBAM_035930__ 611 ACAACCAAAAAGACAATGAGAGAATCTCGCTGTACAAAGAGCTTTACAAG 660
BSNT_01013___ 667 AAAATCTATCATTATATGACCGACACAAGAGGACTTGAT---CATTTGAT 713
||.||.||.|..||||||||.||.|||||||||.|.||| |.||||
RBAM_035930__ 661 AAGATATACCGCTATATGACAGAGACAAGAGGATTGGATAACCTTTTG-- 708
BSNT_01013___ 714 TTGGGTTTACTCTCCCGACGCCAACCGAGATTTTAAAACTGATTTTTACC 763
|||||.||.||.||.||.||||||.||||.||||||||.||.|||||||
RBAM_035930__ 709 -TGGGTGTATTCGCCGGATGCCAACAGAGACTTTAAAACAGACTTTTACC 757
BSNT_01013___ 764 CGGGCGCGTCTTACGTGGATATTGTCGGATTAGATGCGTATTTTCA-AGA 812
|.|||.|.|||||.|||||||||..|||..|.||.||.|| .|||| .||
RBAM_035930__ 758 CAGGCTCATCTTATGTGGATATTACCGGTCTGGACGCTTA-CTTCACTGA 806
BSNT_01013___ 813 TGCCTACTCGATCAAT--GGATACGATCA---GCTAACAG-CGCTTAATA 856
|.|.||..|||| || ||.||.|||.| ||| | |.||.||.|
RBAM_035930__ 807 TCCGTATGCGAT--ATCAGGCTATGATGAAATGCT----GTCTCTGAAAA 850
BSNT_01013___ 857 AACCATTTGCTTTTACAGAA----GTCGGCCCGCAAACAGCAAACGGCAG 902
||||.|||||.|||.|.||| |||.|.|||..|| .|.|||.||
RBAM_035930__ 851 AACCGTTTGCCTTTGCCGAAACCGGTCCGTCCGGTAA----TATCGGAAG 896
BSNT_01013___ 903 CTTCGATTA--CAGCCTGTTCATCAATGCTGTAAAACAAAAATATCCTAA 950
|||.||||| |.|| .||.||||||||..|.|..|||||.|||||..|
RBAM_035930__ 897 CTTTGATTATGCTGC--TTTTATCAATGCGATCAGGCAAAAGTATCCCGA 944
BSNT_01013___ 951 AACCATTTACTTTCTGGCATGGAATGATGAATGGAGCCCAGCTGTAAACA 1000
.||||..||||||.||.|||||.||||..|||..||.||.||.|..|||.
RBAM_035930__ 945 GACCACGTACTTTTTGACATGGGATGAACAATTAAGTCCGGCGGCCAACC 994
BSNT_01013___ 1001 AGGGTGCTTCGGCTTTATATCATGACAGCTGGACACTCAATAAGGGAGAA 1050
..||.||...|||..|.|||||..||||||||||.||.||.|||||.|||
RBAM_035930__ 995 TAGGCGCGCAGGCCCTTTATCAAAACAGCTGGACGCTGAACAAGGGCGAA 1044
BSNT_01013___ 1051 ATATGGAACGGCGATTCTTTAACGCCAATCGTTGAATGA 1089
|||||||||||||..||.||.|||||.||||..||||.|
RBAM_035930__ 1045 ATATGGAACGGCGGGTCCTTGACGCCGATCGCGGAATAA 1083
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