Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05904 and RBAM_035790

See Amino acid alignment / Visit BSNT_05904 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:25
# Commandline: needle
#    -asequence dna-align/BSNT_05904.1.9828.seq
#    -bsequence dna-align/RBAM_035790___licB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05904-RBAM_035790___licB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05904-RBAM_035790___licB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05904
# 2: RBAM_035790___licB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 310
# Identity:     209/310 (67.4%)
# Similarity:   209/310 (67.4%)
# Gaps:          59/310 (19.0%)
# Score: 857.0
# 
#
#=======================================

BSNT_05904         0 --------------------------------------------------      0
                                                                       
RBAM_035790__      1 ATGAATATATTACTCGTTTGTGCAGCAGGGATGTCAACAAGCTTACTCGT     50

BSNT_05904         1 -------ATGGAAAAAAGTGCGCAGGAACAGGGAAAAGACTATACCATTT     43
                            |||||||||||.|||||||||||.||||||||.||||..||.|
RBAM_035790__     51 CACCAAGATGGAAAAAAGCGCGCAGGAACAAGGAAAAGAATATAAAATCT    100

BSNT_05904        44 GGGCAGTTTCAGGCGATTCTGTACAA-AATCATATCGATAAAGCGGATGT     92
                     ||||.||.|||||||||||.|| ||| .|.|||||.|||||||||||.||
RBAM_035790__    101 GGGCGGTGTCAGGCGATTCAGT-CAACCAGCATATTGATAAAGCGGACGT    149

BSNT_05904        93 ATTGCTTCTCGGTCCGCAAGTCCGTTACATGCTTCCGCAGCTCAAAAAAT    142
                     ||||||.||.||.||.|||||||||||..|||||||||||||.|||||||
RBAM_035790__    150 ATTGCTGCTTGGGCCTCAAGTCCGTTATTTGCTTCCGCAGCTGAAAAAAT    199

BSNT_05904       143 TAGGAGAGTCAAAGGGGGTTCCGGTAGATGTCATTAATACCGTCCATTAT    192
                     |.||.||.|||||.||.||.|||||.||.|||||.|||||.||||||||.
RBAM_035790__    200 TGGGTGAATCAAAAGGAGTGCCGGTTGAAGTCATCAATACTGTCCATTAC    249

BSNT_05904       193 GGCACGTGCAACGGGGCGGAAGTGCTGAAATCAGCTGAACAGCTTGGACA    242
                     |||||.||||||||.|||||.||.|||||||||||.||||||||.|||.|
RBAM_035790__    250 GGCACATGCAACGGAGCGGAGGTTCTGAAATCAGCGGAACAGCTCGGAAA    299

BSNT_05904       243 TGTGTCATAG    252
                     .|..||.|||
RBAM_035790__    300 CGCATCGTAG    309


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