Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05901 and RBAM_035770

See Amino acid alignment / Visit BSNT_05901 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:25
# Commandline: needle
#    -asequence dna-align/BSNT_05901___licA.1.9828.seq
#    -bsequence dna-align/RBAM_035770___licA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05901___licA-RBAM_035770___licA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05901___licA-RBAM_035770___licA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05901___licA
# 2: RBAM_035770___licA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 343
# Identity:     265/343 (77.3%)
# Similarity:   265/343 (77.3%)
# Gaps:          20/343 ( 5.8%)
# Score: 1026.0
# 
#
#=======================================

BSNT_05901___      1 GTGAATGAGGAAATGGAACAAATCATTTTTCAAATCATCCTTCACGGAGG     50
                     .|||||||..||||||||||.|.|||||||||.||||||||.||.||.||
RBAM_035770__      1 ATGAATGAAAAAATGGAACAGACCATTTTTCAGATCATCCTGCATGGCGG     50

BSNT_05901___     51 AAACGGTAGAAGCTCCGCAATGGAGGCCATTGCCGCTGCGAAAAGCGGCG    100
                     .|||||.|||||..|..|||||||.|||||||||||  ||.|||||||.|
RBAM_035770__     51 CAACGGCAGAAGTGCATCAATGGAAGCCATTGCCGC--CGCAAAGCGGGG     98

BSNT_05901___    101 ACGCAGAAGAAGC----GCGGA--AAAAGCTTCAAGACGCTGCTGAAGAA    144
                     ...|||    |||    |||||  ||||||||||.||.||.||..|.|||
RBAM_035770__     99 GGACAG----AGCCATGGCGGAAGAAAAGCTTCAGGAAGCCGCAAAGGAA    144

BSNT_05901___    145 TTGTCAAAAGCCCATCATTATCAGACAGAGCTGATCCAAAATGAAGCGGG    194
                     .||.|..||||||||||||||||||||||.|||||||||||||||||.||
RBAM_035770__    145 CTGACGGAAGCCCATCATTATCAGACAGAACTGATCCAAAATGAAGCCGG    194

BSNT_05901___    195 CGGAGAAAAGACGGAAATGACGCTTCTGATGGTTCATGCACAGGATCATT    244
                     |||||||||.||.||.|||||||||.|||||||.|||||.||.|||||||
RBAM_035770__    195 CGGAGAAAAAACAGACATGACGCTTTTGATGGTGCATGCGCAAGATCATT    244

BSNT_05901___    245 TAATGAATGCAATGACAGTGAAGGATATGGCTGCAGAGATCATTGAGTTA    294
                     ||||||||||.|||||.|||||.||..||||.||.|||.|..|.|||.|.
RBAM_035770__    245 TAATGAATGCCATGACCGTGAAAGACTTGGCCGCTGAGTTAGTCGAGATT    294

BSNT_05901___    295 TATGAAAAAATCACCGA----GCAAAGGGGAGCAAGCATATGA    333
                     ||.||||||.|    ||    ||||.|||||||||..||||||
RBAM_035770__    295 TACGAAAAAGT----GAGTCTGCAAGGGGGAGCAAAAATATGA    333


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