Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05900 and RBAM_035760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:25
# Commandline: needle
# -asequence dna-align/BSNT_05900___licH.1.9828.seq
# -bsequence dna-align/RBAM_035760___licH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05900___licH-RBAM_035760___licH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05900___licH-RBAM_035760___licH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05900___licH
# 2: RBAM_035760___licH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1331
# Identity: 1071/1331 (80.5%)
# Similarity: 1071/1331 (80.5%)
# Gaps: 4/1331 ( 0.3%)
# Score: 4291.0
#
#
#=======================================
BSNT_05900___ 1 ATGACAAAAGGATTGAAGATTGTAACGATTGGCGGAGGTTCAAGCTATAC 50
||||||||||||.|.||.|||||||||||.||||||||||||||||||||
RBAM_035760__ 1 ATGACAAAAGGAATTAAAATTGTAACGATCGGCGGAGGTTCAAGCTATAC 50
BSNT_05900___ 51 GCCCGAGCTAGTGGAGGGGTTCATTAAACGGTATGATGAGCTGCCTGTCC 100
.||.|||||.|||||.||..||||||||||.|||||.||.|||||||||.
RBAM_035760__ 51 ACCGGAGCTTGTGGAAGGCATCATTAAACGCTATGAGGAACTGCCTGTCA 100
BSNT_05900___ 101 GTGAATTATGGCTTGTCGATATCCCCGAGGGCGAAGAAAAGCTGAATATT 150
|.|||||||||||.|||||.||.|||||.|||||..||||.||.|||||.
RBAM_035760__ 101 GAGAATTATGGCTCGTCGACATTCCCGAAGGCGAGAAAAAACTCAATATC 150
BSNT_05900___ 151 GTCGGCACACTCGCCAAAAGGATGGTTGAAAAAGCTGGCGTCCCGATTGA 200
||||||||.||.||.|||.|.|||||.||||||||.||.||.|||||.||
RBAM_035760__ 151 GTCGGCACGCTTGCAAAACGCATGGTCGAAAAAGCGGGTGTTCCGATAGA 200
BSNT_05900___ 201 CATTCATCTTACGCTCGACCGGAGAAAAGCGCTGAAAGACGCAGACTTTG 250
.|||||.||.|||||.|||||||||.||||..||||.||.||.||.||.|
RBAM_035760__ 201 GATTCACCTGACGCTTGACCGGAGAGAAGCTTTGAAGGATGCGGATTTCG 250
BSNT_05900___ 251 TTACGACCCAATTCCGTGTCGGACTT-TTGCAGGCAAGAGCAAAGGATGA 299
|.|||||.||||||||.|||||.||| ||| ||||..|.||.||.||.||
RBAM_035760__ 251 TAACGACTCAATTCCGCGTCGGCCTTCTTG-AGGCCCGCGCCAAAGACGA 299
BSNT_05900___ 300 GCGCATTCCGCTAAAATATGGTGTAATTGGCCAGGAAACAAACGGCCCGG 349
.||.||||||||||||||.||||||||.||||||||.||||||||.||||
RBAM_035760__ 300 ACGGATTCCGCTAAAATACGGTGTAATCGGCCAGGAGACAAACGGTCCGG 349
BSNT_05900___ 350 GAGGCCTGTTTAAAGGATTGCGCACAATTCCGGTCATCCTTGAGATCGCA 399
|.||..|.||.|||||..|||||||.||.|||.|.||.||.||.|||||.
RBAM_035760__ 350 GCGGTTTATTCAAAGGGCTGCGCACCATCCCGATTATTCTGGAAATCGCG 399
BSNT_05900___ 400 AAGGACATAGAAGAGCTTTGCCCGAACGCTTGGCTTGTTAACTTCACAAA 449
||.|||||.|||||||||||.|||||.||.|||||.||.||.||||||||
RBAM_035760__ 400 AAAGACATCGAAGAGCTTTGTCCGAATGCATGGCTCGTGAATTTCACAAA 449
BSNT_05900___ 450 CCCTGCCGGCATGGTAACAGAAGCCTTGCTTCGCTACGCCAACCTGAAGA 499
|||||||||||||||.||.||.||||||||.||||||.|.||.||.|..|
RBAM_035760__ 450 CCCTGCCGGCATGGTTACCGAGGCCTTGCTCCGCTACTCGAATCTCACAA 499
BSNT_05900___ 500 AAGTCGTCGGTCTCTGTAATGTTCCAATCGGCATCAAAATGGGCGTAGCC 549
||||||||||.|||||.|||||.||.||||||||.|||||||||||.||.
RBAM_035760__ 500 AAGTCGTCGGCCTCTGCAATGTGCCGATCGGCATTAAAATGGGCGTCGCA 549
BSNT_05900___ 550 AAAGCGCTTGATGTAGATGTGGACCGCGTAGAAGTCCAATTCGCCGGACT 599
|||||..|.||.||.|||||...|||..|.|||||.|||||.|||||.||
RBAM_035760__ 550 AAAGCATTGGACGTGGATGTCAGCCGGATCGAAGTGCAATTTGCCGGGCT 599
BSNT_05900___ 600 GAACCATATGGTATTTGGGCTGGATGTTTTCTTGGACGGCGTAAGTGTGA 649
|||.||.|||||.||.||..|.|||||||||||.||||||||.||.||||
RBAM_035760__ 600 GAATCACATGGTCTTCGGATTAGATGTTTTCTTAGACGGCGTCAGCGTGA 649
BSNT_05900___ 650 AGGAGCAAGTCATCGAGGCGATGGGCGACCCGAAAAACGCGATGACGATG 699
|.||.||||||||.||.||.|||||.||||||||||||||.|||||||||
RBAM_035760__ 650 AAGATCAAGTCATTGAAGCCATGGGAGACCCGAAAAACGCCATGACGATG 699
BSNT_05900___ 700 AAAAATATCTCAGGCGCCGAATGGGAACCGGATTTCTTAAAAGCGCTCAA 749
||||||||.|||||.||.||||||||.||.||.|||.|.||.||||||.|
RBAM_035760__ 700 AAAAATATTTCAGGGGCGGAATGGGAGCCTGAATTCCTGAAGGCGCTCGA 749
BSNT_05900___ 750 TGTCATCCCTTGCGGCTATCACCGTTACTATTTCAAAACAAAAGAGATGC 799
|.|.||.|||||||||||.|||||.||.|||||||||||.|||||.||||
RBAM_035760__ 750 TCTGATTCCTTGCGGCTACCACCGCTATTATTTCAAAACGAAAGAAATGC 799
BSNT_05900___ 800 TGGAGCACGAACTGGAAGCATCACAAACGGAGGGCACCCGCGCAGAAGTC 849
|.|||||.|||.|.|||||.|||||.|||||||||||.|||||.||.|||
RBAM_035760__ 800 TCGAGCATGAAATAGAAGCGTCACAGACGGAGGGCACACGCGCCGAGGTC 849
BSNT_05900___ 850 GTACAGAAGGTCGAAAAAGAGCTGTTCGAGCTTTATAAAGATCCGAACCT 899
|||||||||||.||.|||||.||||||||.||.||.|||||||||||.||
RBAM_035760__ 850 GTACAGAAGGTTGAGAAAGAACTGTTCGAACTGTACAAAGATCCGAATCT 899
BSNT_05900___ 900 TGCGATCAAACCGCCGCAGCTGGAAAAACGGGGCGGAGCTTACTACAGTG 949
.||.||.||||||||||||||.|||||||||||||||||.||||||||||
RBAM_035760__ 900 CGCCATTAAACCGCCGCAGCTTGAAAAACGGGGCGGAGCGTACTACAGTG 949
BSNT_05900___ 950 ATGCAGCATGTAACTTAATCAGCTCCATTTATAATGATAAACATGACATT 999
|.||.||.||.|||.|.|||||||||||.|||||.||.||||||||.||.
RBAM_035760__ 950 ACGCGGCCTGCAACCTGATCAGCTCCATCTATAACGACAAACATGATATC 999
BSNT_05900___ 1000 CAGCCGGTGAACACAATCAATAATGGTGCAATAGCGAGCATTCCAGACGA 1049
|||||.||.||.||.|||||.||.||.||.||.||.||||||||..|.||
RBAM_035760__ 1000 CAGCCCGTCAATACGATCAACAACGGCGCGATCGCCAGCATTCCGAATGA 1049
BSNT_05900___ 1050 TTCCGCAGTTGAAGTGAACTGTGTGATGACGAAA-ACTGGCCCTAAGCCA 1098
.||.||.||.||||||||||||||.||||||||| || |||||.||.||.
RBAM_035760__ 1050 CTCAGCGGTCGAAGTGAACTGTGTCATGACGAAAGAC-GGCCCGAAACCG 1098
BSNT_05900___ 1099 ATTGCTGTCGGCGACTTGCCGGTGTCTGTCCGTGGCCTCGTCCAGCAAAT 1148
||.||.|||||.||..||||||||||||||||.||.||||||||||||||
RBAM_035760__ 1099 ATCGCCGTCGGTGATCTGCCGGTGTCTGTCCGCGGACTCGTCCAGCAAAT 1148
BSNT_05900___ 1149 CAAATCCTTTGAACGTGTCGCGGCAGAAGCGGCAGTTACAGGTGACTACC 1198
||||||.|||||.||||||||.||.|||||.||.||.||.||.||.||.|
RBAM_035760__ 1149 CAAATCATTTGAGCGTGTCGCCGCTGAAGCAGCCGTCACGGGAGATTATC 1198
BSNT_05900___ 1199 AAACTGCACTCCTTGCCATGACGATTAACCCGCTTGTCCCGTCCGATACT 1248
||||.||.||.|||||.||||||||.||.||.||.||||||||.||..|.
RBAM_035760__ 1199 AAACGGCGCTACTTGCGATGACGATCAATCCTCTCGTCCCGTCAGACTCC 1248
BSNT_05900___ 1249 GTGGCCAAACAGATTTTAGACGAAATGCTGGAGGCGCACAAAGCGTATCT 1298
|||||.||....|||.|.||.||||||||.|||||.|||||||...||||
RBAM_035760__ 1249 GTGGCAAAGGCCATTCTGGATGAAATGCTTGAGGCCCACAAAGAACATCT 1298
BSNT_05900___ 1299 GCCGCAGTTTTTCAACAAAATTGAAGCGTAA 1329
|||.||.||.||.||....||||||||.|||
RBAM_035760__ 1299 GCCTCATTTCTTTAAGTCGATTGAAGCATAA 1329
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