Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05892 and RBAM_035720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:24
# Commandline: needle
# -asequence dna-align/BSNT_05892___dltB.1.9828.seq
# -bsequence dna-align/RBAM_035720___dltB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05892___dltB-RBAM_035720___dltB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05892___dltB-RBAM_035720___dltB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05892___dltB
# 2: RBAM_035720___dltB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1193
# Identity: 953/1193 (79.9%)
# Similarity: 953/1193 (79.9%)
# Gaps: 16/1193 ( 1.3%)
# Score: 3775.5
#
#
#=======================================
BSNT_05892___ 1 ATGACGCCTTACAGCTCGTTTTTATTCTTTATACTGCTTGGCATTCTTCT 50
|||||||||||||||||||||||.||||||||..|.|||||.||.|||||
RBAM_035720__ 1 ATGACGCCTTACAGCTCGTTTTTCTTCTTTATCTTACTTGGAATCCTTCT 50
BSNT_05892___ 51 TCTGCCGACGATCATTCTCGGCTTAAACGGAAAAAGATTTCAAGCATACA 100
|.||||||||||.|||.|.||..|.|||||.||.|||||.||||.|||||
RBAM_035720__ 51 TTTGCCGACGATTATTTTAGGGCTGAACGGCAAGAGATTCCAAGGATACA 100
BSNT_05892___ 101 ACATGTTCATATCTATCATTATATTGGCTTTAATTTTTTCGCACGACTTA 150
|||||||.|||||.|||||..||||||||||.|||||..||||.||..|.
RBAM_035720__ 101 ACATGTTTATATCCATCATCGTATTGGCTTTGATTTTCGCGCATGATCTG 150
BSNT_05892___ 151 CACGGGGTCATCGCGCTGTGCCTGTTTACAATATGGCAGGTGCTCCTGAT 200
|||||.||.|||||.||.||..|.|||||..|.|||||||||||..|.||
RBAM_035720__ 151 CACGGCGTGATCGCACTATGTATCTTTACGCTGTGGCAGGTGCTTTTAAT 200
BSNT_05892___ 201 CAGCGGCTATCTGGCATACCGGCAGAAAGCGAACAGCGGCTTTGTCTTTT 250
|||.||.|||||.||.|||.|.|.||||||.|||||||||||||||||..
RBAM_035720__ 201 CAGGGGTTATCTCGCTTACAGACTGAAAGCCAACAGCGGCTTTGTCTTCA 250
BSNT_05892___ 251 GCGGGGCTGTTATCGCGTCTATTCTGCCTTTATTTCTGTCAAAAATATGG 300
|...|||.||.||||||||.|||.|.||..|.|||.|.||.|||.|||||
RBAM_035720__ 251 GTATGGCCGTGATCGCGTCCATTTTACCCCTGTTTTTATCTAAATTATGG 300
BSNT_05892___ 301 CCG--TTTCTGTCACACCCGCAGCCGCATCATCCGCCGCATAACCTGATC 348
||| |||||.|| |.||.|| |||.|||||.|||...||||||||||||
RBAM_035720__ 301 CCGTTTTTCTTTC-CGCCGGC-GCCTCATCACCCGGTTCATAACCTGATC 348
BSNT_05892___ 349 AGCTTTTTAGGGATTTCATATTTAACCTTTAAAGGCGTTCAGCTGATTAT 398
||.||.|||||.|||||.|||||.||.|||||||||||.||||||||.||
RBAM_035720__ 349 AGTTTCTTAGGAATTTCTTATTTGACATTTAAAGGCGTCCAGCTGATCAT 398
BSNT_05892___ 399 GGAAGCAAGAGACGGACTGCTGAAAGAACAGCTGCCATTGCACCGCCTGC 448
||||.|.||||||||.|||.|.||||||.|..||||..|.||||||||..
RBAM_035720__ 399 GGAAACGAGAGACGGGCTGATTAAAGAAAAAATGCCGCTTCACCGCCTTT 448
BSNT_05892___ 449 TGTATTTCATCCTGTTTTTCCCGACGATTTCCTCCGGCCCGATCGACAGA 498
||||.||.||..|||||||||||||.|||||.|||||.||||||||||||
RBAM_035720__ 449 TGTACTTTATTATGTTTTTCCCGACCATTTCTTCCGGTCCGATCGACAGA 498
BSNT_05892___ 499 TACCGCCGGTTCGTCAAGGATGAACAGAAGGCTTGGACGAAAGAAGAATA 548
||||||.|.||.|.||||||.||||||||.|..|||||.||.|.||||||
RBAM_035720__ 499 TACCGCAGATTTGCCAAGGACGAACAGAAAGTATGGACAAAGGGAGAATA 548
BSNT_05892___ 549 CGCCGACCTGTTGTATACGGGAATCCATAAAATCTTCATCGGTTTCCTGT 598
|||.||..|..|||||||.||.||.||||||||.||.|||||||||.|.|
RBAM_035720__ 549 CGCTGATTTACTGTATACCGGCATTCATAAAATTTTTATCGGTTTCTTAT 598
BSNT_05892___ 599 ATAAATTTATTATCGGCTACGCGATCAATACGTACTTCATCATGAATCT- 647
|.|||||.||||||||.||.|||||.||.|||||.|||||.||||||||
RBAM_035720__ 599 ACAAATTCATTATCGGATATGCGATTAACACGTATTTCATTATGAATCTG 648
BSNT_05892___ 648 TCCCGCA-ATCACGCACAATAAGATTCTTGGG-AACCTGCTGTACATGTA 695
| |.|| |||||.||||..|| |.|.|.||| ||..|||||||||||||
RBAM_035720__ 649 T--CTCATATCACCCACAGCAA-ACTGTGGGGTAATGTGCTGTACATGTA 695
BSNT_05892___ 696 CGGCTACAGCATGTATTTATTCTTTGATTTCGCCGGCTACACGATGTTTG 745
|||.||||||.||||..|.||.||||||||.||.||.|||||||||||||
RBAM_035720__ 696 CGGATACAGCTTGTACCTGTTTTTTGATTTTGCGGGTTACACGATGTTTG 745
BSNT_05892___ 746 CCGTCGGGGTCAGCTACATTATGGGCATTAAATCACCGGAAAACTTTAAT 795
|||||||.||.|||||.||.|||||.||.|||||.|||||||||||||||
RBAM_035720__ 746 CCGTCGGTGTAAGCTATATCATGGGTATCAAATCTCCGGAAAACTTTAAT 795
BSNT_05892___ 796 AAACCATTTATCAGTAAAAATATTAAAGATTTCTGGAATCGCTGGCATAT 845
||.||.||||||||.|||||.||||||||.||||||||.||||||||.||
RBAM_035720__ 796 AAGCCGTTTATCAGCAAAAACATTAAAGACTTCTGGAACCGCTGGCACAT 845
BSNT_05892___ 846 GTCTCTGTCATTTTGGTTCAGAGATTATGTGTTTATGAGATTCGTATTTT 895
|||..|.||.||.|||||||||||.||.||.||||||.|.||.||.||.|
RBAM_035720__ 846 GTCCTTATCCTTCTGGTTCAGAGACTACGTATTTATGCGCTTTGTTTTCT 895
BSNT_05892___ 896 GGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATC 945
|||||||.||||||||.|||||.||.|||||.|||||||||||.||||||
RBAM_035720__ 896 GGATGACAAAGAAAAAATGGATAAAGAACCGGATGGCCGTCTCGAACATC 945
BSNT_05892___ 946 GGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTTGCGCC 995
|||||||||||||||||.|||||||||||.||.||||||||.||.||.|.
RBAM_035720__ 946 GGGTATTTCCTGCTGTTCATGCTGATGGGCGTCTGGCACGGACTCGCCCT 995
BSNT_05892___ 996 GCAATATATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACA 1045
|||||||||..|.||||||||.||.||||||||..|.|||||..|.||.|
RBAM_035720__ 996 GCAATATATTGTATACGGCCTGTACCACGCCGTATTAATGACCGGGTATA 1045
BSNT_05892___ 1046 ACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGC 1095
|||||||.|||||.||||||||||||||.||.||||||||..||||.||.
RBAM_035720__ 1046 ACTTTTTTGAGAAATGGAATAAGAAATACAAGTGGCTGCCCGCCAATCGT 1095
BSNT_05892___ 1096 TGGACAACCATTCTCGCTATTGTGATCACATTCCATTTCGTTTGCTTCGG 1145
|..||..||.||.|.||.||.||.|||||||||||||||||.||.|||||
RBAM_035720__ 1096 TTTACGGCCTTTTTAGCCATCGTCATCACATTCCATTTCGTATGTTTCGG 1145
BSNT_05892___ 1146 GTTTTATATTTTCTCAGGAAAACCATTTCATCACCACCATTAA 1188
.||||||||||||||||||||||||||||||||| |||
RBAM_035720__ 1146 ATTTTATATTTTCTCAGGAAAACCATTTCATCAC------TAA 1182
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