Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05872 and RBAM_035660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:23
# Commandline: needle
# -asequence dna-align/BSNT_05872___epr.1.9828.seq
# -bsequence dna-align/RBAM_035660___epr.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05872___epr-RBAM_035660___epr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05872___epr-RBAM_035660___epr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05872___epr
# 2: RBAM_035660___epr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2180
# Identity: 1225/2180 (56.2%)
# Similarity: 1225/2180 (56.2%)
# Gaps: 556/2180 (25.5%)
# Score: 3518.0
#
#
#=======================================
BSNT_05872___ 1 ATGAAAAACATGTCTTGCAAACTTGTTGTATCAGTCACTCTG-------- 42
.||||||| |||.|||
RBAM_035660__ 1 -------------------------ATGTATCA--CACCCTGAAACCGAT 23
BSNT_05872___ 43 -------------TTTT---TCAG--TTTTCTCACCATAGGCC----CTC 70
||.| ||.| |.||||| .||| |.|
RBAM_035660__ 24 AATGGCCGCAGCCTTGTGCGTCGGCCTGTTCTC------CGCCGCGGCGC 67
BSNT_05872___ 71 TCGCTCATGCGCAAAACAGCAGCGAGAAAGAGGTTATTGTGGTTTATAAA 120
.|||.||.|| |.|.|| ||| |||....||.|||||.|||||.||.|||
RBAM_035660__ 68 CCGCGCACGC-CGAGAC-GCA-CGACCGGGACGTTATCGTGGTGTACAAA 114
BSNT_05872___ 121 AA-CAAGGCCGGAAAGGAAACCATCCTGGACAGTGATGCTGATGTTGAAC 169
|| ||| ..|||.||||||.||..|.|.|||||.|..||.|||||.||||
RBAM_035660__ 115 AATCAA-AACGGCAAGGAATCCGCCATAGACAGCGGAGCGGATGTGGAAC 163
BSNT_05872___ 170 AGCAGTATAAACATCTTCCCGCGGTAGCGGTCACAGCAGA-CCAGGAGAC 218
||...|||.|.|||||.||.||.||.||.||..||||.|| .|| .|.||
RBAM_035660__ 164 AGACCTATCAGCATCTCCCGGCAGTCGCCGTGTCAGCCGATTCA-CAAAC 212
BSNT_05872___ 219 AGTAAAAGAATTAAAGCAGGATCCTGATATTTTGTATGTAGAAAACAACG 268
.||.|||||..|.||.|||||.|||||.||.||.|||||||||.||||.|
RBAM_035660__ 213 GGTGAAAGACCTGAAACAGGACCCTGACATCTTATATGTAGAAGACAATG 262
BSNT_05872___ 269 TATCATTTACCGCAGCAGACAGCACGGATTT------------------- 299
||||.|||...|||||||||.|..|.|||.|
RBAM_035660__ 263 TATCCTTTCAGGCAGCAGACGGTTCTGATATCCGCCCGTTATCAGCGGCC 312
BSNT_05872___ 300 CAAAGTGCTGTCAG-----ACGGCACTGACACCTCTGACAACTTTGAGCA 344
||||| ||| || ||||||.| |||
RBAM_035660__ 313 CAAAG------CAGCAGTTAC-GCACTGCC-----------------GCA 338
BSNT_05872___ 345 ATGGAACCTTGAGCCCATTCAGGTGAAACAGGCTTGGAAGGCAGGACTGA 394
||||.|..|.||.||.|.||||||.||.|||||.|||||.|.|||..|||
RBAM_035660__ 339 ATGGGATATAGAACCGACTCAGGTCAAGCAGGCGTGGAAAGAAGGCTTGA 388
BSNT_05872___ 395 CAGGAAAGAATATCAAAATTGCCGTCATTGACAGCGGGATCTCCCCCCAC 444
|.|||||.||..|.|||.|.||.||||||||||||||.||.|.|||.||.
RBAM_035660__ 389 CGGGAAAAAAGGTGAAAGTGGCTGTCATTGACAGCGGCATTTACCCTCAT 438
BSNT_05872___ 445 GATGACCTGTCGATTGCCGGCGGGTATTCAGCTGTCAGTTATACCTCTTC 494
||||||||.||.||||||||.||.|||||.||.|||||.|||||.||.||
RBAM_035660__ 439 GATGACCTTTCCATTGCCGGAGGCTATTCCGCAGTCAGCTATACTTCCTC 488
BSNT_05872___ 495 TTACAAAGATGATAACGGCCACGGAACACATGTCGCAGGAATTATCGGAG 544
.|||||||||||.|||||.|||||.||.||||||||.|||||.||.|..|
RBAM_035660__ 489 ATACAAAGATGACAACGGACACGGGACGCATGTCGCCGGAATCATTGCGG 538
BSNT_05872___ 545 CCAAGCATAACGGCTACGGAATTGACGGCATCGCACCGGAAGCACAAATA 594
|.||.|||.||||.|||||.||||||||||||||.|||||.|..|...||
RBAM_035660__ 539 CAAAACATGACGGATACGGCATTGACGGCATCGCGCCGGATGTCCGGTTA 588
BSNT_05872___ 595 TACGCGGTTAAAGCGCTTGATCAGAACGGCT-CGGGGGATCTTCAAAGTC 643
||.|||||||||||..|.|| |||||.||.| |.|||||||||.||||.|
RBAM_035660__ 589 TATGCGGTTAAAGCATTAGA-CAGAAAGGGTGCAGGGGATCTTAAAAGCC 637
BSNT_05872___ 644 TTCTCCAAGGAATTGACTGGTCGATCGC----AAACGGGATGGACATCGT 689
||||..|||..||.|||||||||||||| ||| |||||||||.|
RBAM_035660__ 638 TTCTTAAAGCGATCGACTGGTCGATCGCCAATAAA----ATGGACATCAT 683
BSNT_05872___ 690 CAATATGAGCCTTGGCAC-GACGTCAGACAGCAAAATCCTTCATGACGCC 738
||||||||||||.||.|| .||| |||||||||||||.|||||.||||||
RBAM_035660__ 684 CAATATGAGCCTCGGAACTAACG-CAGACAGCAAAATTCTTCACGACGCC 732
BSNT_05872___ 739 GTGAACAAAGCATATGAACAAGGTGTTCTGCTTGTTGCCGCAAGC-GGTA 787
||..||||||||||..||.||||..|..||.|.||.||||| .|| ||.|
RBAM_035660__ 733 GTAGACAAAGCATACAAAAAAGGAATCGTGATCGTAGCCGC-CGCAGGAA 781
BSNT_05872___ 788 ACGACGGAAACGGCAAGCCAGTGAATTATCCGGCGGCATACAGCAGTGT- 836
|||||||.|||...||.||.||.||||||||||..||.||||||||.||
RBAM_035660__ 782 ACGACGGCAACAAAAAACCCGTCAATTATCCGGGTGCCTACAGCAGCGTA 831
BSNT_05872___ 837 -CGTTGCGGTTTCAGCAACAAACGAAAAGAATCAGCTTGCCTCCTTCTCA 885
|| ||.||.|||||..|||..|||||.||...|||.||..|.||.||.
RBAM_035660__ 832 ACG--GCAGTCTCAGCGTCAACTGAAAAAAACGGGCTCGCGGCTTTTTCC 879
BSNT_05872___ 886 ACAACTGGAGATGAAGTTGAATTTTCAGCACCGGGGACAAACATCACAAG 935
||.||.|||.|..||.||||.|||.|.|||||.||.||.||.||.||.||
RBAM_035660__ 880 ACGACCGGAAAACAAATTGAGTTTACCGCACCCGGCACCAATATTACGAG 929
BSNT_05872___ 936 CACTTA-CTTAAACCAGTAT-TATGCAACGG--GAAGCGGAACATCCCAA 981
|||.|| ||.||.|.| || ||.||.|||| || |||.|||||.|||
RBAM_035660__ 930 CACGTATCTGAATCAA--ATGTACGCCACGGCTGA--CGGCACATCTCAA 975
BSNT_05872___ 982 GCGACACCGCACGCCGCTGCCATGTTTGCCTTGTTAAAACAGCGTGATCC 1031
||..|.||.||||.|.|.|.||||||.||..||.|.|..|||....||||
RBAM_035660__ 976 GCCGCGCCCCACGTCACCGGCATGTTCGCGCTGCTCAGGCAGAAATATCC 1025
BSNT_05872___ 1032 TGCCGAGACAAACGTCCAGCTTCGCGAGGAAATGCGGAGAAATATCGTTG 1081
.|..||.|||||....|||||.||..||.|.||||.|..|||..||...|
RBAM_035660__ 1026 CGAGGAAACAAATACACAGCTCCGGCAGCAGATGCAGCAAAACGTCAAAG 1075
BSNT_05872___ 1082 ATCTTGGTACCGCAGGCCGCGATCAG-CAATTTGGCTACGGCTTAATCCA 1130
||||.||..|..|.||.||.|| ||| |.|||.||.||||||.|..|.||
RBAM_035660__ 1076 ATCTGGGCGCTCCCGGACGTGA-CAGCCGATTCGGGTACGGCCTGGTGCA 1124
BSNT_05872___ 1131 ATATAAAGCACAGGCAACAGATTCAGCGTACGCGGCAGCAGAGCAAGCGG 1180
||||.|.|.| |.||||.|| |||.| .||.||.|..||.|
RBAM_035660__ 1125 ATATCACGTA-AAGCAAAAG----AGCTT-------TGCTGAACGGGCCG 1162
BSNT_05872___ 1181 TGAAAAAAGCGGAACAAACAAAAGCACAAACCGATATCAA-CAAAGCGCA 1229
|.|.||||||||||.|.||.|||..|||..|.|||||||| ||| |||
RBAM_035660__ 1163 TAATAAAAGCGGAAAAGACGAAAAAACAGGCAGATATCAATCAA---GCA 1209
BSNT_05872___ 1230 AGAAC--TCGTCAGCCAGCTGCCGGGCTCCGACGCCAAAACTGCCCTGCA 1277
|.||| .|||||||.||||| ||| |.|.|||| |..
RBAM_035660__ 1210 AAAACGGCCGTCAGCAAGCTG------TCC-AAGTCAAA--------GGG 1244
BSNT_05872___ 1278 AAAAA--------GA---CTGGATAAAGTACAG-TCATAC----AGAAAT 1311
||||| || |.||||.|| ||.|| |||.|| ||||||
RBAM_035660__ 1245 AAAAACCGCTCTCGAGTCCCGGATCAA-TAAAGTTCAGACGGCAAGAAAT 1293
BSNT_05872___ 1312 GTAAAAGATGCGAAAGACAAAGTCGCAAATGCAGAAAAATATAAAACACA 1361
||.|..||.||.|.||||||||||...|.|||.||||||.|.||.|.|
RBAM_035660__ 1294 GTGACGGACGCAAGAGACAAAGTCCGGACTGCCGAAAAACAAAAGAAA-- 1341
BSNT_05872___ 1362 GCAAA----CCGTTGATACAGCACAAACCGCCATCAACAAGCTGCCAAAC 1407
||| ||||..||.|.|||||||.||||||...|||..|.||...|
RBAM_035660__ 1342 --AAAACCGCCGTCAATGCCGCACAAAGCGCCATTCGCAAATTACCGGCC 1389
BSNT_05872___ 1408 GGAACAGACAAAAAGAACCTGCAAAAAC-GCTTAGACCAAGTAAAACGCT 1456
||..||||.|||||....||||||||.| |||| ||||||
RBAM_035660__ 1390 GGTTCAGAGAAAAAAGGGCTGCAAAAGCGGCTT-----------AACGCT 1428
BSNT_05872___ 1457 ACATCGCGTCAAAGCAAGCGAAAGACAAAGTTGCGAAAGCGGAAAAAAGC 1506
|||||..||||| .||
RBAM_035660__ 1429 -------GTCAACTCAAGC----------CTT------------------ 1443
BSNT_05872___ 1507 AAAAAGAAAACAGATGTGGACAGCGCACAATC-AGCAATTGGCAAGCTGC 1555
..||||||||.||.||.||||| || |||| ||
RBAM_035660__ 1444 ---TTGAAAACAGCTGAGGCCAGCG-----TCAAGCA---GG-------- 1474
BSNT_05872___ 1556 CTGCAAGTTCAGAAAAAACGTCC-CTG----CAGAAACGCCTTAACAAAG 1600
|.|||||||.|.|| ||| |||.|.|||
RBAM_035660__ 1475 ---------CGGAAAAAAAGACCTCTGAGGCCAGCACCGC---------- 1505
BSNT_05872___ 1601 TGAAGAGCACCAATTTGAAGACGGCA--CAGC--AATCCGTATCTGCGGC 1646
||.||| |||| |..||| |||| ||||| |.| |||
RBAM_035660__ 1506 --AAAAGC-CCAA-------AAAGCAGTCAGCGAAATCC--AGC--CGG- 1540
BSNT_05872___ 1647 TGAAAAGAAATCAACTG--ATGCAAATGCGGC----------AAAAGCAC 1684
|||||||||..||| | .||.|||..|||| |||||
RBAM_035660__ 1541 -GAAAAGAAAAAAAC-GCTCTGGAAAAACGGCTTGACCGGATAAAAG--- 1585
BSNT_05872___ 1685 AATCAGCCGTCAATCAGCTTCAAGCAGGCAAGGACAAAACAGCATTGCAA 1734
||.|.| ||||.|.|| |||||||.||
RBAM_035660__ 1586 -ATAAAC--TCAACCGGC----AGCAGGCTAG------------------ 1610
BSNT_05872___ 1735 AAACGGTTAGACAAAGTGAAGAAAAAGGTGGCGGCGGCTGAAGCAAAAAA 1784
||||||||| ||||| |||||| |||||
RBAM_035660__ 1611 --------AGACAAAGT----AAAAA--------CGGCTG-----AAAAA 1635
BSNT_05872___ 1785 AGTGGAAACTGCCAAGGCAAAAGTGAAGAAAGCGGAAAAAGACAAAACAA 1834
| ||||| ||.|
RBAM_035660__ 1636 A----------CCAAG------------------------------ACGA 1645
BSNT_05872___ 1835 AGAAATCAAAGGCATCCGCTCAGTCTGCAGTGAATCAATTAAAAGCATCC 1884
|.|||.||||..||.|.||.||..|.|||||.|..|.|||.||..|.||.
RBAM_035660__ 1646 AAAAAGCAAAATCAGCGGCGCAAACGGCAGTCAGCCGATTGAAGCCGTCT 1695
BSNT_05872___ 1885 AATGAAAAAACAAAGCTGCAAAAACGGCTGAACGCCGT-CAAACCG---- 1929
...|||||.||.|..|||||||||||..|| ||| |.|..||
RBAM_035660__ 1696 GCCGAAAAGACCAGCCTGCAAAAACGCGTG-----CGTGCGATTCGGGTG 1740
BSNT_05872___ 1930 -AAAAGTAACCAAAAACCTTTAAGACTTGCATTCCAGGTCTTAAAGGTTT 1978
||.||
RBAM_035660__ 1741 AAATAG-------------------------------------------- 1746
BSNT_05872___ 1979 TTTACATTCTAAGAACATCACACACAACCTTTTTCCCATCCATTGTACAG 2028
RBAM_035660__ 1746 -------------------------------------------------- 1746
BSNT_05872___ 2029 GCTTTTCATACTATTGCTATACAGCCATGA 2058
RBAM_035660__ 1746 ------------------------------ 1746
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