Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05868 and RBAM_035650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:23
# Commandline: needle
# -asequence dna-align/BSNT_05868___ywbA.1.9828.seq
# -bsequence dna-align/RBAM_035650___ywbA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05868___ywbA-RBAM_035650___ywbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05868___ywbA-RBAM_035650___ywbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05868___ywbA
# 2: RBAM_035650___ywbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1352
# Identity: 1039/1352 (76.8%)
# Similarity: 1039/1352 (76.8%)
# Gaps: 46/1352 ( 3.4%)
# Score: 4038.5
#
#
#=======================================
BSNT_05868___ 1 ATGAGCGCATTCACTCGGGTGATGGAGGAAAAAATAATGCCTGTCGCCGG 50
|||||..|.||||.||||||.|||||.||||||||.||||||||||||||
RBAM_035650__ 1 ATGAGTACGTTCAATCGGGTCATGGAAGAAAAAATCATGCCTGTCGCCGG 50
BSNT_05868___ 51 GAAAATTGCCGGGCAGCGGCATCTCAGCGCTTTGCGTGACGGAATTATCC 100
.|||.|.|||||.||..||||..|.||.|||||.||.|||||.|||||..
RBAM_035650__ 51 AAAAGTCGCCGGCCAAAGGCACTTAAGAGCTTTACGGGACGGCATTATTT 100
BSNT_05868___ 101 TGACCATGCCGCTGATTATTATCGGGTCTGTCTTCTTGATTTTAACGAGC 150
||||.||||||||.||.||.|||||.||.||.||..|||||.|.|||||.
RBAM_035650__ 101 TGACTATGCCGCTTATCATCATCGGATCGGTTTTTCTGATTCTGACGAGT 150
BSNT_05868___ 151 CTGCCGATTCCGGGGTATGCTGATTTCATGGCGAGTGTGTTTGG-GAACG 199
||.||||||||.||.|||||.|||||.|||||..||.|.||.|| ||| .
RBAM_035650__ 151 CTTCCGATTCCCGGTTATGCCGATTTTATGGCTGGTCTTTTCGGTGAA-A 199
BSNT_05868___ 200 AGTGGGCCGATAAGCTCGGATATCCTGTTAACGCTTCGTTTGATATTATG 249
|.||||..||.||||||||.|||||.||.||.||.||.||||||||||||
RBAM_035650__ 200 ATTGGGTTGAAAAGCTCGGGTATCCCGTGAATGCGTCCTTTGATATTATG 249
BSNT_05868___ 250 GCGATGATTGCCGCTTTTGGGATCGCCTATCGGCTGGCGGAAAGCTATGG 299
|||.|..|.|||||.||||||||.|||||.|||||.|||||||||||||.
RBAM_035650__ 250 GCGCTTGTCGCCGCCTTTGGGATTGCCTACCGGCTTGCGGAAAGCTATGA 299
BSNT_05868___ 300 TGTCGATGCCCTTTCTGCCGGAGCGATTTCAATTGCCGCATTTCTGCTGG 349
.||.||||||||.||..|.|||||.|||.|..|||||||.|||.|..|||
RBAM_035650__ 300 GGTGGATGCCCTGTCGTCGGGAGCCATTGCCCTTGCCGCCTTTTTATTGG 349
BSNT_05868___ 350 CAACGCCGTTTGAGGTGCCGTTTACACCGCATGGCT---CAACGGAACCC 396
|.|||||||.|.||.|.|||||||..||..|.|||| ||||.|| .
RBAM_035650__ 350 CGACGCCGTATCAGATTCCGTTTATTCCTGACGGCTCGGCAACAGA---G 396
BSNT_05868___ 397 ATCATGGTAGGGGGCGGAATCCCGATCACGCTGCTTGGCAGCAAGGGCTT 446
||.|||||.||.|||||.||.|||||..|||||||.||.|||||.||..|
RBAM_035650__ 397 ATTATGGTGGGAGGCGGCATTCCGATTTCGCTGCTCGGAAGCAAAGGTCT 446
BSNT_05868___ 447 ATTTGTCGCCATGCTGATCGCCTTGTTTTCAACCGAAATCTATCGGTACA 496
.||||||||.|||.|.||.||..||.|.||.||.|||.|.||.||||..|
RBAM_035650__ 447 GTTTGTCGCGATGATCATTGCAATGCTGTCTACGGAAGTGTACCGGTTTA 496
BSNT_05868___ 497 TTATTCAAAAAAATATCGTCTTCAAAATGCCAGACGGTGTGCCGCCTGCG 546
|.||.||||.||||||||||.|.||||||||.|||||.||||||||||||
RBAM_035650__ 497 TCATACAAAGAAATATCGTCATTAAAATGCCTGACGGAGTGCCGCCTGCG 546
BSNT_05868___ 547 GTAAGCAAATCGTTTGTCGCGCTGATTCCCGGCTTTATCATTGTGTTTCT 596
||.|||||||||||.||.|||||.||.|||||.||.||.|||.|....||
RBAM_035650__ 547 GTCAGCAAATCGTTCGTTGCGCTCATCCCCGGTTTCATTATTATTACGCT 596
BSNT_05868___ 597 CGTGTGGCTGGCGCGCCTTCTGATTGAAATGACACCTTTTCAGAGTCTGC 646
.||.||||||||.||.||..|.||||||||.||.||||||.|.||.||.|
RBAM_035650__ 597 TGTATGGCTGGCCCGTCTGTTTATTGAAATAACTCCTTTTAAAAGCCTCC 646
BSNT_05868___ 647 ACAATGTCGTAGGAGACCTGCTTGGCACACCGCTTTCCATCCTAGGCGGC 696
|||||||||||||.||.|||||.|||||.|||||.||.||.||.|||||.
RBAM_035650__ 647 ACAATGTCGTAGGCGATCTGCTGGGCACCCCGCTGTCTATTCTGGGCGGG 696
BSNT_05868___ 697 AGTCTCGGCGGAAGCCTGATCGCTGAATTTGTGCAGATGCTGCTTTGGTC 746
||||||||||||||.||.|||||.|||||.|||||.||||||||||||||
RBAM_035650__ 697 AGTCTCGGCGGAAGTCTTATCGCCGAATTCGTGCAAATGCTGCTTTGGTC 746
BSNT_05868___ 747 GTGCGGGATTCACGGGGCTTCCATCATTGGCGGAATCATGGCGCCGATTT 796
||||||.||.|||||.||.|||||.||.|||||..|||||.|||||||.|
RBAM_035650__ 747 GTGCGGCATACACGGCGCGTCCATTATCGGCGGCGTCATGTCGCCGATCT 796
BSNT_05868___ 797 GGTACGGCGCGATGGATGCCAACCGTCTCGCCTTCCAAGCGGGCGAGGCG 846
|||||||.||||||||||||||||||.|.||.||.||.|||||.||.|||
RBAM_035650__ 797 GGTACGGGGCGATGGATGCCAACCGTTTGGCTTTTCAGGCGGGGGAAGCG 846
BSNT_05868___ 847 CTGCCGAGTATTTTTACGACTCAGTTCTTTCAAATTTGGATCAATGTCGG 896
||||||||.|||||||||||.||||||||||||||.|||||.||||||||
RBAM_035650__ 847 CTGCCGAGCATTTTTACGACACAGTTCTTTCAAATATGGATTAATGTCGG 896
BSNT_05868___ 897 CGGGAGCGGGGCGACGCTGGCGCTTGTCCTGACGATGCTTGTGCGCTCCC 946
|||.|||||.||||||||.||.|||||.|||||.|||||||||||||||.
RBAM_035650__ 897 CGGAAGCGGAGCGACGCTTGCCCTTGTGCTGACCATGCTTGTGCGCTCCA 946
BSNT_05868___ 947 GGAGTAAACAAATGAAGCAGCTTGGACGATTAGGAATCGGCCCTGCGCTA 996
|.||.|||||.|||||.|||||.||.||..|.||||||||.||.|||.|.
RBAM_035650__ 947 GAAGCAAACAGATGAAACAGCTCGGCCGTCTCGGAATCGGGCCCGCGATT 996
BSNT_05868___ 997 TTTAATATCAACGAGCCGATCATTTTCGGCATGCCGATTGTCATGAATCC 1046
|||||.||.|||||.|||||.||||||||.||||||.|.|||||||||||
RBAM_035650__ 997 TTTAACATTAACGAACCGATTATTTTCGGGATGCCGCTCGTCATGAATCC 1046
BSNT_05868___ 1047 GCTCCTTATTGTCCCATTTATCATCGCACCGCTCCTCACGATTACCGCGA 1096
|||..|.||.||.||.||||||||.||.||||||.|.||.|||||.||||
RBAM_035650__ 1047 GCTGTTAATCGTGCCTTTTATCATTGCGCCGCTCTTGACCATTACGGCGA 1096
BSNT_05868___ 1097 CTTATATCGGCATGAGCACCGGGCTGGTGGCAAGACCGGCCGGAATCGCG 1146
|.||.|||||.||||||||.|||.|||||||||.||||||.||||||||.
RBAM_035650__ 1097 CGTACATCGGGATGAGCACGGGGATGGTGGCAAAACCGGCGGGAATCGCC 1146
BSNT_05868___ 1147 GTGCCGTGGACGATGCCGCCGCTCATATCAGGCTACCTGGCGACAGGCGG 1196
|||||||||||||||||||||||.||.||.||.||..|.|||||.|||||
RBAM_035650__ 1147 GTGCCGTGGACGATGCCGCCGCTGATTTCCGGTTATTTAGCGACGGGCGG 1196
BSNT_05868___ 1197 AAAGGTGTCGGGCGCCGTTATGCAGCTGGTAAACCTGCTGATCACCTGTG 1246
.||..|.||.||..|.||.|||||||||.|.||.||.|||||.||.|.|.
RBAM_035650__ 1197 GAAAATCTCCGGTTCGGTCATGCAGCTGATCAATCTCCTGATTACATTTA 1246
BSNT_05868___ 1247 CTATCTACTATCCGTTTTTCAGAATATGGGATCATCAAAAATGGCGGGAA 1296
..|||||.||||||||||||.||||.|||||||.|||||||||| |
RBAM_035650__ 1247 TCATCTATTATCCGTTTTTCCGAATTTGGGATCTTCAAAAATGG-----A 1291
BSNT_05868___ 1297 GAGAGTGCGGTTGAATCTGGCGG----ATAA------------------- 1323
||||| ||| |.||||| |.||
RBAM_035650__ 1292 GAGAG-------GAA-CGGGCGGCGGAACAAAACGTCACTGAAGAAACAT 1333
BSNT_05868___ 1323 -- 1323
RBAM_035650__ 1334 AA 1335
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