Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05850 and RBAM_035520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:22
# Commandline: needle
# -asequence dna-align/BSNT_05850___ywbO.1.9828.seq
# -bsequence dna-align/RBAM_035520___ywbO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05850___ywbO-RBAM_035520___ywbO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05850___ywbO-RBAM_035520___ywbO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05850___ywbO
# 2: RBAM_035520___ywbO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 612
# Identity: 435/612 (71.1%)
# Similarity: 435/612 (71.1%)
# Gaps: 18/612 ( 2.9%)
# Score: 1435.0
#
#
#=======================================
BSNT_05850___ 1 ATGACAGTACACATTAAAGTTTATTCAGATTACGTCTGCCCATTTTGTTT 50
||||||.|.||.||||||||.|||||.|||||.||.||.||.|||||.||
RBAM_035520__ 1 ATGACACTGCAGATTAAAGTATATTCTGATTATGTATGTCCGTTTTGCTT 50
BSNT_05850___ 51 TGTTGGAAAAGCCGCTTTTGAAGAAGCGATAAAAGGA-AAGGATGTTGAA 99
|||.||.|||||.||.|||||||||||.|| .||||| |||||.||..|.
RBAM_035520__ 51 TGTCGGCAAAGCGGCGTTTGAAGAAGCAAT-CAAGGACAAGGACGTACAG 99
BSNT_05850___ 100 GTCGAGTGGATGCCGTTTGAACTGCGCCCAAGTCCATCTCCTCAGCTTGA 149
||.||.|||||||||||||||.||||.||.||.||.||.||..|.|||||
RBAM_035520__ 100 GTGGAATGGATGCCGTTTGAATTGCGTCCGAGCCCCTCGCCGAAACTTGA 149
BSNT_05850___ 150 TCCGGTCAATGATCCTTCCAAACAGTACATGTGGCAGACATCGATTCAGC 199
||||||.||||||||..||||.|.|.|.||||||.|.|..||.|||.|||
RBAM_035520__ 150 TCCGGTGAATGATCCCGCCAAGCGGCAGATGTGGAAAAACTCCATTGAGC 199
BSNT_05850___ 200 CAATGGCGGAGAAATTAGGAGTCGAGATCAATTTTCCAAACGTCTCGCCC 249
|.||||||.||...|||||.||.||.||||..||.||...|||.||.||.
RBAM_035520__ 200 CGATGGCGCAGTCTTTAGGCGTTGAAATCACGTTCCCCCGCGTGTCACCG 249
BSNT_05850___ 250 CATCCGTATACAGACCTCGCGTTTGAAGGCTTCCATTTTGCGAAGGAATA 299
|||||.||.||.||..|.||.|||||||||||.|||||.||.||||||.|
RBAM_035520__ 250 CATCCTTACACGGATTTGGCATTTGAAGGCTTTCATTTCGCAAAGGAACA 299
BSNT_05850___ 300 CAATAAAGGACATGAATACAACACCCGTGTCTTTCAGGCGTTTTTCCAAG 349
....||||||...||||||.|.||.||.||.||||||||.||.||.||.|
RBAM_035520__ 300 TGGGAAAGGAAGCGAATACCATACACGCGTTTTTCAGGCATTCTTTCAGG 349
BSNT_05850___ 350 AGGGCCAAAATATCGGCGACATTGACATCTTGACGAAGCTCGCCGAGGAA 399
|.|..|||||||||||.|||.|||.|.|..||||.|||||.||.||.|||
RBAM_035520__ 350 AAGAGCAAAATATCGGTGACGTTGGCGTGCTGACAAAGCTTGCGGAAGAA 399
BSNT_05850___ 400 GTGGGATTAGACGGTGCATCATTCAAATCAGCACTGGAAACAAGAACATA 449
|..|||.|.|||||.||..|.||||||...||.||.||.||||||.|.||
RBAM_035520__ 400 GCCGGACTTGACGGCGCTGCCTTCAAAGAGGCGCTTGAGACAAGAGCGTA 449
BSNT_05850___ 450 TCAG-GACGTGCAGCGCCAAGCCTTGAAGCACGCTTATGAAGAGGCTGAC 498
||| .||||.|||||..||||..|....||.||||||||.||.||.|.|
RBAM_035520__ 450 -CAGACACGTACAGCGGGAAGCGCTCCGCCATGCTTATGAGGAAGCCGGC 498
BSNT_05850___ 499 ATCACAGCCGTTCCAACCTTTATTATCGGCGACACTG---TAATTCCAGG 545
||.||.||.||.||.||.|||||.|||||.|| || .|||.||.||
RBAM_035520__ 499 ATTACGGCAGTGCCGACGTTTATCATCGGAGA---TGAGAGAATCCCTGG 545
BSNT_05850___ 546 TGCTGCCGGCAAGGATGTATTTGAA-AAAGCGATTTCTGA---CGAGCAG 591
.||.||.||.|||||....|||||| |||.| || ||| .||.|.|
RBAM_035520__ 546 CGCGGCGGGAAAGGAAACCTTTGAACAAATC-AT---TGAGCGGGAACTG 591
BSNT_05850___ 592 AAGAAAAAGTAA 603
||.|||...|||
RBAM_035520__ 592 AATAAACGTTAA 603
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