Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05843 and RBAM_035460
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:22
# Commandline: needle
# -asequence dna-align/BSNT_05843___galK.1.9828.seq
# -bsequence dna-align/RBAM_035460___galK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05843___galK-RBAM_035460___galK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05843___galK-RBAM_035460___galK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05843___galK
# 2: RBAM_035460___galK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1227
# Identity: 846/1227 (68.9%)
# Similarity: 846/1227 (68.9%)
# Gaps: 96/1227 ( 7.8%)
# Score: 2744.5
#
#
#=======================================
BSNT_05843___ 1 ATGCGGGAAG----AGCTAAAGGGGATA---TTTGCAAGTGTATTCGGAG 43
|| |||| |..|||| ||.| |||||...|||||||||.|
RBAM_035460__ 1 AT----GAAGCACAAAATAAA---GAAAGCGTTTGCTGATGTATTCGGGG 43
BSNT_05843___ 44 AAAAAGAGGGATTACGGTTTTTTTTCGCACCTGGAAGAGTGAATCTGATT 93
||...||||...|.||..||||.||.||.||.||.|||||||||||.||.
RBAM_035460__ 44 AATCGGAGGACCTGCGCATTTTCTTTGCGCCCGGCAGAGTGAATCTCATC 93
BSNT_05843___ 94 GGAGAACATACAGACTATAACGGCGGGCATGTATTTCCGTGCGCGCTGAC 143
|||||.|||||.||.||||||||.||.||.||.|||||.|||||||||||
RBAM_035460__ 94 GGAGAGCATACGGATTATAACGGGGGCCACGTCTTTCCTTGCGCGCTGAC 143
BSNT_05843___ 144 AATGGGTACATATGCTGCTGTTGCAGAAAGAAAAGACGGGCTTGTCCGGA 193
.||.|||||||||||.||.||....||.|||...|||.||||.|||.|.|
RBAM_035460__ 144 GATCGGTACATATGCAGCCGTCCGGGAGAGAGGGGACAGGCTCGTCAGAA 193
BSNT_05843___ 194 TGTATTCAGATAACTTTAGAAACGCAGGCATCAAGGAATGCAGCCTTGAC 243
||||.||..||.|.||||.|.|.||.|||||.|||||||||||.||.||.
RBAM_035460__ 194 TGTACTCTCATCATTTTAAAGATGCGGGCATAAAGGAATGCAGTCTCGAT 243
BSNT_05843___ 244 GACATTCGCTATCAAAAAGAAGACGACTGGGCGAACTACCCAAAAGGCGT 293
.|.||.||||||||||||||.||||..|||||.|||||.||.|||||.||
RBAM_035460__ 244 AATATCCGCTATCAAAAAGAGGACGGGTGGGCCAACTATCCGAAAGGGGT 293
BSNT_05843___ 294 GATTTATGAATTTCAACAG-AGGGGATATGCAGTTCCCCATGGCTTTGAC 342
.||....||||.|| .|.| ||.||.|.|.|..||||.||.|||||.||.
RBAM_035460__ 294 CATGGCGGAATGTC-TCGGCAGCGGTTTTTCCCTTCCGCACGGCTTCGAT 342
BSNT_05843___ 343 ATTGTATTTTCAGGGAATATTCCAAACGGGGCGGGGCTGTCGTCTTCCGC 392
|||||.||.|..||.||.||.||.|||||.|||||||||||.|||||.||
RBAM_035460__ 343 ATTGTGTTCTGGGGAAACATCCCGAACGGCGCGGGGCTGTCATCTTCGGC 392
BSNT_05843___ 393 TTCTATTGAACTGCTGATGGGGGTCGTGCTCCAAAACTATTTTCAT---C 439
|||.||||||||..|.|.||.||||.|.||| ||..|.|..||| |
RBAM_035460__ 393 TTCGATTGAACTTGTTACGGCGGTCATTCTC---AAGGAATGCCATGAGC 439
BSNT_05843___ 440 CTGAAGTAGATGCGCTTGAGCTT-GTGAAAATGGCGCAGCATGCGGAAAA 488
.|||.|..|||..|||.|| ||| |||||..|.||.|||...||||||||
RBAM_035460__ 440 TTGAGGCGGATATGCTCGA-CTTGGTGAAGCTCGCTCAGACGGCGGAAAA 488
BSNT_05843___ 489 --CCATTTTATCGGCGTCAATTGCGGAATTATGGACCAATTTGCAATTGG 536
|| |||||||||||||..||||||||.|||||.|||||.||.||.||
RBAM_035460__ 489 TTCC--TTTATCGGCGTCAGCTGCGGAATAATGGATCAATTCGCCATCGG 536
BSNT_05843___ 537 AATGGGGAAAAAACATCATGCGATGCTGCTGAACTGTGACACGCTTGACT 586
||||||.||.||||||||||||||.||||||||.||.|..|||||...||
RBAM_035460__ 537 AATGGGAAAGAAACATCATGCGATTCTGCTGAATTGCGGGACGCTCAGCT 586
BSNT_05843___ 587 ATGAATATAGCAAACTC--AATGTCTCAGGCCTCGCGCTGGTCATCGCGA 634
.||||||||..|||||| |.|| ||.||.||..||.|.||.||.||.|
RBAM_035460__ 587 TTGAATATACAAAACTCGGACTG--TCGGGGCTGTCGATCGTTATTGCAA 634
BSNT_05843___ 635 ATACGAACAAAAAAAGAACATTGGCTGACTCAAGCTATAATACGAGACGC 684
||||.||.||||||.||||..|.||.||||||.|.|||||||||||.|.|
RBAM_035460__ 635 ATACCAATAAAAAACGAACGCTTGCAGACTCAGGTTATAATACGAGGCTC 684
BSNT_05843___ 685 CAAGAATGCAATGATGCATTGCT---TGATCTGAAAAAAGGCCTCGATAT 731
.|.||.|||...||.|| ||| ||||||..|.|| || ||.|
RBAM_035460__ 685 AAGGAGTGCGGGGAAGC---GCTTTGTGATCTTCAGAA--GC----ATCT 725
BSNT_05843___ 732 TAC------AGCACTGGGCGACATCAAGCCTTCTGATTTCGATGCGCATT 775
|.| |.|||||||.||..|.|..|||||.|.|||.||.||.|||
RBAM_035460__ 726 TTCCGTTCAATCACTGGGAGAGCTGACCCCTTCCGCTTTTGACGCCCAT- 774
BSNT_05843___ 776 CCAGC----CTGATCCAAAATGAAACGAACAGACGCCGGGCAAAGCACGC 821
|| |||||.||.||||||..|||||||||||||||.||.|||||
RBAM_035460__ 775 ---GCGGAGCTGATTCAGAATGAAGTGAACAGACGCCGGGCGAAACACGC 821
BSNT_05843___ 822 TGTATACGAAAATCACCGTGCTATCAAGACGGCCCATATGTTCAAAGAG- 870
.||.||.|||||||||||..|.||..||.|.|||.|.|||||| ||
RBAM_035460__ 822 CGTCTATGAAAATCACCGCACAATAGAGGCCGCCGACATGTTC----AGT 867
BSNT_05843___ 871 AACAATATAG----ATGAAATCGGGCAGTTAATGAAGGAATCCCACCTTT 916
|||||| .|| ||.|.|||||..|.|||||||.|||.||.||.||.|
RBAM_035460__ 868 AACAAT-CAGCTTCATCATATCGGTGAATTAATGAGGGATTCGCATCTCT 916
BSNT_05843___ 917 CATTGAAG-GATGACTATGAAGTAACATGCCCTGAACTTGATGAGCTTG- 964
| ||.|.| ||||||||.||.||.||..|.|.|||.||.|||...||.|
RBAM_035460__ 917 C-TTTACGCGATGACTACGAGGTGACGAGTCATGAGCTGGATACACTGGC 965
BSNT_05843___ 965 TGTTTGCGGCATGGGATCACGAAGGTGTAATTGGATCAAGAATGACGGGA 1014
|| ..|||||.|||...||||..||.||.||.||||||||.|||||||||
RBAM_035460__ 966 TG-AAGCGGCCTGGCGCCACGGCGGGGTGATCGGATCAAGGATGACGGGA 1014
BSNT_05843___ 1015 GCAGGCTTTGGCGGATGCACCATCAGCATTGTAAAAGATGA-----GTTC 1059
||.||.||.|||||.||.||..||||.||.||.||.||.|| .|||
RBAM_035460__ 1015 GCCGGTTTCGGCGGCTGTACGGTCAGTATCGTTAAGGACGATGCGGTTTC 1064
BSNT_05843___ 1060 GTTGATGATTTTATTCAGAAGGTTGGAGACAGATATCAAGAAAAAACAGG 1109
| |||||||||.|.|.||..||.|.|.|.|||.|.|||||.|||||
RBAM_035460__ 1065 G-----GATTTTATTGAAACGGCAGGGGCCCGCTATGAGGAAAAGACAGG 1109
BSNT_05843___ 1110 GCTCCGAGCGGACTTTTATGTCGCGGATATCGGAGAGGGAGCGAGAGAAC 1159
|.....|||.||||||||....||||||.||||||..|||||||||||||
RBAM_035460__ 1110 GAGAAAAGCTGACTTTTACACGGCGGATGTCGGAGCCGGAGCGAGAGAAC 1159
BSNT_05843___ 1160 TAAAGGGGGAGTGA------------- 1173
|||||||||| |||
RBAM_035460__ 1160 TAAAGGGGGA-TGACGATGGCAATTGA 1185
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