Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05835 and RBAM_035420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:21
# Commandline: needle
# -asequence dna-align/BSNT_05835___qoxB.1.9828.seq
# -bsequence dna-align/RBAM_035420___qoxB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05835___qoxB-RBAM_035420___qoxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05835___qoxB-RBAM_035420___qoxB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05835___qoxB
# 2: RBAM_035420___qoxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1954
# Identity: 1739/1954 (89.0%)
# Similarity: 1739/1954 (89.0%)
# Gaps: 8/1954 ( 0.4%)
# Score: 7806.0
#
#
#=======================================
BSNT_05835___ 1 ATGAAATTCAAATGGGACGAATTTTTCGTAACTGGTGACCCATTAATTCT 50
||||||||.|.||||||.||||||||.|||||.|||||||||||||||||
RBAM_035420__ 1 ATGAAATTGAGATGGGATGAATTTTTTGTAACAGGTGACCCATTAATTCT 50
BSNT_05835___ 51 GGGCGCACAAGTTTCCATTGCGCTTTCAACCATTGCCATTATTTTTGTAC 100
|||||||||||||||||||||||||||.||.||.||.||.||..||||||
RBAM_035420__ 51 GGGCGCACAAGTTTCCATTGCGCTTTCCACTATCGCTATCATCGTTGTAC 100
BSNT_05835___ 101 TGACTTACTTTAAAAAGTGGAAATGGCTGTGGTCTGAATGGATAACTACT 150
|.||.|||||.|||||||||||||||||.||||||||||||.|.||..||
RBAM_035420__ 101 TCACATACTTCAAAAAGTGGAAATGGCTCTGGTCTGAATGGCTGACGTCT 150
BSNT_05835___ 151 GTTGACCATAAAAAACTCGGAATCATGTATATTATATCTGCTGTAATTAT 200
||.||||||||.|||||.|||||||||||.|||||.||||||||.||.||
RBAM_035420__ 151 GTAGACCATAAGAAACTTGGAATCATGTACATTATCTCTGCTGTTATCAT 200
BSNT_05835___ 201 GTTATTCCGCGGCGGTGTCGACGGTCTGATGATGCGTGCCCAGCTAGCGC 250
|.|.|||||||||||.||||||||..||||||||||.||||||.||||||
RBAM_035420__ 201 GCTGTTCCGCGGCGGGGTCGACGGCTTGATGATGCGCGCCCAGTTAGCGC 250
BSNT_05835___ 251 TTCCGAATAACAGTTTTTTAGACTCAAACCACTATAATGAAATTTTTACA 300
||||.|||||||||||||||||||||||||||||||||||.||.|||||.
RBAM_035420__ 251 TTCCTAATAACAGTTTTTTAGACTCAAACCACTATAATGAGATCTTTACG 300
BSNT_05835___ 301 ACTCACGGTACAATCATGATCATCTTCATGGCGATGCCGTTCTTAATCGG 350
|||||||||||.||||||||.||||||||||||||||||||.||||||||
RBAM_035420__ 301 ACTCACGGTACGATCATGATTATCTTCATGGCGATGCCGTTTTTAATCGG 350
BSNT_05835___ 351 TCTTATCAACGTTGTTGTGCCTCTTCAAATCGGTGCCCGCGACGTTGCGT 400
|||.|||||||||||.||.|||.|.||.||||||||.||||||||.||.|
RBAM_035420__ 351 TCTGATCAACGTTGTCGTACCTTTGCAGATCGGTGCGCGCGACGTAGCAT 400
BSNT_05835___ 401 TCCCTTACTTGAACAACCTGAGCTTCTGGACGTTCTTTGTAGGGGCGATG 450
||||||||||||||||||||||.||||||||||||||.|||||.||||||
RBAM_035420__ 401 TCCCTTACTTGAACAACCTGAGTTTCTGGACGTTCTTCGTAGGTGCGATG 450
BSNT_05835___ 451 CTTTTCAATATTTCTTTCGTTATCGGAGGTTCTCCGAACGCAGGCTGGAC 500
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_035420__ 451 CTTTTCAATATTTCTTTCGTTATCGGAGGTTCTCCGAACGCAGGCTGGAC 500
BSNT_05835___ 501 GAGTTATATGCCGCTTGCAAGTAACGACATGAGCCCTGGGCCGGGTGAGA 550
||||||.||||||||.|||||.|||||||||||.||.|||||.|||||||
RBAM_035420__ 501 GAGTTACATGCCGCTGGCAAGCAACGACATGAGTCCCGGGCCTGGTGAGA 550
BSNT_05835___ 551 ACTACTACCTCCTCGGACTTCAGATTGCCGGTATCGGTACCCTGATGACA 600
|||.||||||.|||||.|||||||||||||||||||||||.||||||||.
RBAM_035420__ 551 ACTTCTACCTGCTCGGTCTTCAGATTGCCGGTATCGGTACGCTGATGACG 600
BSNT_05835___ 601 GGGATCAACTTTATGGTAACAATCTTAAAAATGAGAACAAAAGGCATGAC 650
||.||||||||||||||.||.|||.|.||||||.|.||.|||||||||||
RBAM_035420__ 601 GGTATCAACTTTATGGTGACGATCCTGAAAATGCGTACGAAAGGCATGAC 650
BSNT_05835___ 651 ATTAATGCGTATGCCGATGTTCACATGGACAACACTGATCACAATGGTTA 700
..|.||||||||||||||||||||||||||.||.|||||.||||||||||
RBAM_035420__ 651 GCTGATGCGTATGCCGATGTTCACATGGACGACGCTGATTACAATGGTTA 700
BSNT_05835___ 701 TTATCGTGTTTGCGTTCCCTGTACTTACAGTAGCATTGGCACTTTTATCA 750
|||||||.||.||.||||||||..|.|||||.||||||||.||.||||||
RBAM_035420__ 701 TTATCGTATTCGCCTTCCCTGTTTTGACAGTGGCATTGGCGCTGTTATCA 750
BSNT_05835___ 751 TTTGATCGTTTGTTCGGCGCTCACTTTTTCACATTGGAAGCAGGCGGTAT 800
|||||.||||||||||||||||||||||||||..|||||||.||||||||
RBAM_035420__ 751 TTTGACCGTTTGTTCGGCGCTCACTTTTTCACGCTGGAAGCCGGCGGTAT 800
BSNT_05835___ 801 GCCGATGCTTTGGGCTAACTTGTTCTGGATTTGGGGACATCCTGAAGTAT 850
|||||||||||||||||||||||||||||||||||||||.||||||||||
RBAM_035420__ 801 GCCGATGCTTTGGGCTAACTTGTTCTGGATTTGGGGACACCCTGAAGTAT 850
BSNT_05835___ 851 ATATCGTTATTCTT-CCGGCGTTTGGTATTTTCTCAGAAATCATCTCAAG 899
||||||||| |||| |||||.||.|||||||||||.|||||.||.|| ||
RBAM_035420__ 851 ATATCGTTA-TCTTACCGGCATTCGGTATTTTCTCTGAAATTATTTC-AG 898
BSNT_05835___ 900 C-TTTGCAAGAAAACAATTGTTTGGTTACAAAGCGATGGTTGGTTCTATT 948
| |||||||||||.||.||.||.|||||||||||||||||.||.||.|||
RBAM_035420__ 899 CGTTTGCAAGAAAGCAGTTATTCGGTTACAAAGCGATGGTCGGCTCAATT 948
BSNT_05835___ 949 ATCGCCATCTCTGTATTGAGTTTCTTAGTTTGGACTCACCACTTCTTCAC 998
||||||||.||.||..||||||||.|.||.||||||||||||||||||||
RBAM_035420__ 949 ATCGCCATTTCCGTCCTGAGTTTCCTTGTATGGACTCACCACTTCTTCAC 998
BSNT_05835___ 999 AATGGGGAACAGTGCGTCCGTTAACTCATTCTTCTCAATTACAACAATGG 1048
||||||||||||||||||.||||||||.||||||||.||.|||||.||||
RBAM_035420__ 999 AATGGGGAACAGTGCGTCTGTTAACTCTTTCTTCTCGATAACAACGATGG 1048
BSNT_05835___ 1049 CAATCTCAATCCCAACCGGGGTTAAAATCTTTAACTGGCTCTTTACAATG 1098
|.||.||..|.||.||||||||||||||||||||||||||||||||.|||
RBAM_035420__ 1049 CGATTTCGGTTCCGACCGGGGTTAAAATCTTTAACTGGCTCTTTACGATG 1098
BSNT_05835___ 1099 TATAAAGGCCGAATCAGCTTTACAACACCTATGCTGTGGGCGCTTGCGTT 1148
|||||||||||||||||.|||||||||||.||||||||||||||||||||
RBAM_035420__ 1099 TATAAAGGCCGAATCAGTTTTACAACACCGATGCTGTGGGCGCTTGCGTT 1148
BSNT_05835___ 1149 CATTCCTAACTTCGTTATCGGCGGGGTTACAGGGGTTATGCTTGCGATGG 1198
|||.||.|||||||||.||||||||||.||||||||||||||||||||||
RBAM_035420__ 1149 CATCCCGAACTTCGTTGTCGGCGGGGTAACAGGGGTTATGCTTGCGATGG 1198
BSNT_05835___ 1199 CAGCAGCGGATTATCAATACCATAATACGTACTTCCTTGTATCTCACTTC 1248
|.|||||.|||||||||||||||||||||||||||||.||||||||||||
RBAM_035420__ 1199 CTGCAGCCGATTATCAATACCATAATACGTACTTCCTCGTATCTCACTTC 1248
BSNT_05835___ 1249 CACTATGTGCTGATTGCGGGTACTGTATTTGCTTGTTTCGCCGGATTTAT 1298
||||||||||||||.||||||||.||||||||.||||||||.||||||||
RBAM_035420__ 1249 CACTATGTGCTGATCGCGGGTACAGTATTTGCATGTTTCGCAGGATTTAT 1298
BSNT_05835___ 1299 TTTCTGGTATCCAAAAATGTTCGGCCACAAGCTGAACGAAAGAATTGGAA 1348
||||||||||||.|||||||||||.||||||||||||||||||||.||||
RBAM_035420__ 1299 TTTCTGGTATCCGAAAATGTTCGGTCACAAGCTGAACGAAAGAATCGGAA 1348
BSNT_05835___ 1349 AATGGTTCTTCTGGATCTTTATGATCGGGTTCAATATTTGTTTCTTCCCG 1398
||||||||||||||||||||||||||||.||.|||.|.|||||||||||.
RBAM_035420__ 1349 AATGGTTCTTCTGGATCTTTATGATCGGATTTAATGTATGTTTCTTCCCT 1398
BSNT_05835___ 1399 CAATATTTCTTGGGGCTTCAAGGCATGCCTCGCCGTATTTACACATACGG 1448
|||||.|||||||||||.|||||.||||||||||||||||||||.|||||
RBAM_035420__ 1399 CAATACTTCTTGGGGCTGCAAGGTATGCCTCGCCGTATTTACACTTACGG 1448
BSNT_05835___ 1449 ACCGAATGACGGCTGGACAACATTGAACTTTATCTCAACAGTCGGAGCTT 1498
||||||||||||.|||||..||||.||||||||.|||||.||||||||.|
RBAM_035420__ 1449 ACCGAATGACGGATGGACTGCATTAAACTTTATTTCAACTGTCGGAGCCT 1498
BSNT_05835___ 1499 TCATGATGGGTGTAGGATTCTTAATCCTTTGCTATAACATCTACTACAGC 1548
|||||||||||||.||||||||||||||||||||.|||||||||||||||
RBAM_035420__ 1499 TCATGATGGGTGTCGGATTCTTAATCCTTTGCTACAACATCTACTACAGC 1548
BSNT_05835___ 1549 TTCCGTTACTCTACTCGTGAAATCAGCGGAGATTCATGGGGTGTGGGACG 1598
|||||.|||||||||||.||.||||||||||||||||||||.||||||||
RBAM_035420__ 1549 TTCCGCTACTCTACTCGCGAGATCAGCGGAGATTCATGGGGCGTGGGACG 1598
BSNT_05835___ 1599 TACGCTTGATTGGGCGACTTCTTCTGCGATTCCGCCGCATTACAACTTTG 1648
|||||||||.|||||||||||.||||||||||||||||||||||||||||
RBAM_035420__ 1599 TACGCTTGAGTGGGCGACTTCATCTGCGATTCCGCCGCATTACAACTTTG 1648
BSNT_05835___ 1649 CGGTGCTTCCTGAAGTCAAATCTCAAGATGCATTCCTGCATATGAAAGAA 1698
||||||||||||||||.||||||||||||||.|.||||||..||||||||
RBAM_035420__ 1649 CGGTGCTTCCTGAAGTGAAATCTCAAGATGCGTACCTGCAATTGAAAGAA 1698
BSNT_05835___ 1699 GAAAAAACTGAATTAT--ACCCTGAAAGCAAATTCAAGAAAATCCATATG 1746
||.|||||.|| ||| |.||.||||||||.||||||||||||||||||
RBAM_035420__ 1699 GACAAAACGGA--TATTCATCCGGAAAGCAAGTTCAAGAAAATCCATATG 1746
BSNT_05835___ 1747 CCAAGCAACTCAGGCAGACCGTTCTTTATGTCTGTTGCCTTCGGTCTCGC 1796
||...||||||.||.||||||.|..|||||||.||.||.||||||.|.||
RBAM_035420__ 1747 CCGCACAACTCCGGAAGACCGCTTATTATGTCAGTGGCGTTCGGTATTGC 1796
BSNT_05835___ 1797 TGGCTTTGGACTTGTCTTTGAATGGTACTGGATGGGCGTAGTCGGATTGA 1846
.|||||.||||||||.||||||||||.||||||||||.|.|||||.||||
RBAM_035420__ 1797 AGGCTTCGGACTTGTATTTGAATGGTTCTGGATGGGCATTGTCGGCTTGA 1846
BSNT_05835___ 1847 TCGGAGTCCTGCTCTGCATGGTTCTGCGTTCATTCGAATACGACAACGGC 1896
||||..|.|||||.||||||||.||.||||||||.|||||.|||||.|||
RBAM_035420__ 1847 TCGGCATTCTGCTTTGCATGGTGCTTCGTTCATTTGAATATGACAATGGC 1896
BSNT_05835___ 1897 TACTACATTAGTGTTGATGAAATAAAAGAGACGGAAAGAAAGATTTCCGA 1946
|||||.||...||||||.||||||||||||||||||||||||||||||||
RBAM_035420__ 1897 TACTATATACCTGTTGAAGAAATAAAAGAGACGGAAAGAAAGATTTCCGA 1946
BSNT_05835___ 1947 ATAA 1950
||||
RBAM_035420__ 1947 ATAA 1950
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