Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05835 and RBAM_035420

See Amino acid alignment / Visit BSNT_05835 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:21
# Commandline: needle
#    -asequence dna-align/BSNT_05835___qoxB.1.9828.seq
#    -bsequence dna-align/RBAM_035420___qoxB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05835___qoxB-RBAM_035420___qoxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05835___qoxB-RBAM_035420___qoxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05835___qoxB
# 2: RBAM_035420___qoxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1954
# Identity:    1739/1954 (89.0%)
# Similarity:  1739/1954 (89.0%)
# Gaps:           8/1954 ( 0.4%)
# Score: 7806.0
# 
#
#=======================================

BSNT_05835___      1 ATGAAATTCAAATGGGACGAATTTTTCGTAACTGGTGACCCATTAATTCT     50
                     ||||||||.|.||||||.||||||||.|||||.|||||||||||||||||
RBAM_035420__      1 ATGAAATTGAGATGGGATGAATTTTTTGTAACAGGTGACCCATTAATTCT     50

BSNT_05835___     51 GGGCGCACAAGTTTCCATTGCGCTTTCAACCATTGCCATTATTTTTGTAC    100
                     |||||||||||||||||||||||||||.||.||.||.||.||..||||||
RBAM_035420__     51 GGGCGCACAAGTTTCCATTGCGCTTTCCACTATCGCTATCATCGTTGTAC    100

BSNT_05835___    101 TGACTTACTTTAAAAAGTGGAAATGGCTGTGGTCTGAATGGATAACTACT    150
                     |.||.|||||.|||||||||||||||||.||||||||||||.|.||..||
RBAM_035420__    101 TCACATACTTCAAAAAGTGGAAATGGCTCTGGTCTGAATGGCTGACGTCT    150

BSNT_05835___    151 GTTGACCATAAAAAACTCGGAATCATGTATATTATATCTGCTGTAATTAT    200
                     ||.||||||||.|||||.|||||||||||.|||||.||||||||.||.||
RBAM_035420__    151 GTAGACCATAAGAAACTTGGAATCATGTACATTATCTCTGCTGTTATCAT    200

BSNT_05835___    201 GTTATTCCGCGGCGGTGTCGACGGTCTGATGATGCGTGCCCAGCTAGCGC    250
                     |.|.|||||||||||.||||||||..||||||||||.||||||.||||||
RBAM_035420__    201 GCTGTTCCGCGGCGGGGTCGACGGCTTGATGATGCGCGCCCAGTTAGCGC    250

BSNT_05835___    251 TTCCGAATAACAGTTTTTTAGACTCAAACCACTATAATGAAATTTTTACA    300
                     ||||.|||||||||||||||||||||||||||||||||||.||.|||||.
RBAM_035420__    251 TTCCTAATAACAGTTTTTTAGACTCAAACCACTATAATGAGATCTTTACG    300

BSNT_05835___    301 ACTCACGGTACAATCATGATCATCTTCATGGCGATGCCGTTCTTAATCGG    350
                     |||||||||||.||||||||.||||||||||||||||||||.||||||||
RBAM_035420__    301 ACTCACGGTACGATCATGATTATCTTCATGGCGATGCCGTTTTTAATCGG    350

BSNT_05835___    351 TCTTATCAACGTTGTTGTGCCTCTTCAAATCGGTGCCCGCGACGTTGCGT    400
                     |||.|||||||||||.||.|||.|.||.||||||||.||||||||.||.|
RBAM_035420__    351 TCTGATCAACGTTGTCGTACCTTTGCAGATCGGTGCGCGCGACGTAGCAT    400

BSNT_05835___    401 TCCCTTACTTGAACAACCTGAGCTTCTGGACGTTCTTTGTAGGGGCGATG    450
                     ||||||||||||||||||||||.||||||||||||||.|||||.||||||
RBAM_035420__    401 TCCCTTACTTGAACAACCTGAGTTTCTGGACGTTCTTCGTAGGTGCGATG    450

BSNT_05835___    451 CTTTTCAATATTTCTTTCGTTATCGGAGGTTCTCCGAACGCAGGCTGGAC    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_035420__    451 CTTTTCAATATTTCTTTCGTTATCGGAGGTTCTCCGAACGCAGGCTGGAC    500

BSNT_05835___    501 GAGTTATATGCCGCTTGCAAGTAACGACATGAGCCCTGGGCCGGGTGAGA    550
                     ||||||.||||||||.|||||.|||||||||||.||.|||||.|||||||
RBAM_035420__    501 GAGTTACATGCCGCTGGCAAGCAACGACATGAGTCCCGGGCCTGGTGAGA    550

BSNT_05835___    551 ACTACTACCTCCTCGGACTTCAGATTGCCGGTATCGGTACCCTGATGACA    600
                     |||.||||||.|||||.|||||||||||||||||||||||.||||||||.
RBAM_035420__    551 ACTTCTACCTGCTCGGTCTTCAGATTGCCGGTATCGGTACGCTGATGACG    600

BSNT_05835___    601 GGGATCAACTTTATGGTAACAATCTTAAAAATGAGAACAAAAGGCATGAC    650
                     ||.||||||||||||||.||.|||.|.||||||.|.||.|||||||||||
RBAM_035420__    601 GGTATCAACTTTATGGTGACGATCCTGAAAATGCGTACGAAAGGCATGAC    650

BSNT_05835___    651 ATTAATGCGTATGCCGATGTTCACATGGACAACACTGATCACAATGGTTA    700
                     ..|.||||||||||||||||||||||||||.||.|||||.||||||||||
RBAM_035420__    651 GCTGATGCGTATGCCGATGTTCACATGGACGACGCTGATTACAATGGTTA    700

BSNT_05835___    701 TTATCGTGTTTGCGTTCCCTGTACTTACAGTAGCATTGGCACTTTTATCA    750
                     |||||||.||.||.||||||||..|.|||||.||||||||.||.||||||
RBAM_035420__    701 TTATCGTATTCGCCTTCCCTGTTTTGACAGTGGCATTGGCGCTGTTATCA    750

BSNT_05835___    751 TTTGATCGTTTGTTCGGCGCTCACTTTTTCACATTGGAAGCAGGCGGTAT    800
                     |||||.||||||||||||||||||||||||||..|||||||.||||||||
RBAM_035420__    751 TTTGACCGTTTGTTCGGCGCTCACTTTTTCACGCTGGAAGCCGGCGGTAT    800

BSNT_05835___    801 GCCGATGCTTTGGGCTAACTTGTTCTGGATTTGGGGACATCCTGAAGTAT    850
                     |||||||||||||||||||||||||||||||||||||||.||||||||||
RBAM_035420__    801 GCCGATGCTTTGGGCTAACTTGTTCTGGATTTGGGGACACCCTGAAGTAT    850

BSNT_05835___    851 ATATCGTTATTCTT-CCGGCGTTTGGTATTTTCTCAGAAATCATCTCAAG    899
                     ||||||||| |||| |||||.||.|||||||||||.|||||.||.|| ||
RBAM_035420__    851 ATATCGTTA-TCTTACCGGCATTCGGTATTTTCTCTGAAATTATTTC-AG    898

BSNT_05835___    900 C-TTTGCAAGAAAACAATTGTTTGGTTACAAAGCGATGGTTGGTTCTATT    948
                     | |||||||||||.||.||.||.|||||||||||||||||.||.||.|||
RBAM_035420__    899 CGTTTGCAAGAAAGCAGTTATTCGGTTACAAAGCGATGGTCGGCTCAATT    948

BSNT_05835___    949 ATCGCCATCTCTGTATTGAGTTTCTTAGTTTGGACTCACCACTTCTTCAC    998
                     ||||||||.||.||..||||||||.|.||.||||||||||||||||||||
RBAM_035420__    949 ATCGCCATTTCCGTCCTGAGTTTCCTTGTATGGACTCACCACTTCTTCAC    998

BSNT_05835___    999 AATGGGGAACAGTGCGTCCGTTAACTCATTCTTCTCAATTACAACAATGG   1048
                     ||||||||||||||||||.||||||||.||||||||.||.|||||.||||
RBAM_035420__    999 AATGGGGAACAGTGCGTCTGTTAACTCTTTCTTCTCGATAACAACGATGG   1048

BSNT_05835___   1049 CAATCTCAATCCCAACCGGGGTTAAAATCTTTAACTGGCTCTTTACAATG   1098
                     |.||.||..|.||.||||||||||||||||||||||||||||||||.|||
RBAM_035420__   1049 CGATTTCGGTTCCGACCGGGGTTAAAATCTTTAACTGGCTCTTTACGATG   1098

BSNT_05835___   1099 TATAAAGGCCGAATCAGCTTTACAACACCTATGCTGTGGGCGCTTGCGTT   1148
                     |||||||||||||||||.|||||||||||.||||||||||||||||||||
RBAM_035420__   1099 TATAAAGGCCGAATCAGTTTTACAACACCGATGCTGTGGGCGCTTGCGTT   1148

BSNT_05835___   1149 CATTCCTAACTTCGTTATCGGCGGGGTTACAGGGGTTATGCTTGCGATGG   1198
                     |||.||.|||||||||.||||||||||.||||||||||||||||||||||
RBAM_035420__   1149 CATCCCGAACTTCGTTGTCGGCGGGGTAACAGGGGTTATGCTTGCGATGG   1198

BSNT_05835___   1199 CAGCAGCGGATTATCAATACCATAATACGTACTTCCTTGTATCTCACTTC   1248
                     |.|||||.|||||||||||||||||||||||||||||.||||||||||||
RBAM_035420__   1199 CTGCAGCCGATTATCAATACCATAATACGTACTTCCTCGTATCTCACTTC   1248

BSNT_05835___   1249 CACTATGTGCTGATTGCGGGTACTGTATTTGCTTGTTTCGCCGGATTTAT   1298
                     ||||||||||||||.||||||||.||||||||.||||||||.||||||||
RBAM_035420__   1249 CACTATGTGCTGATCGCGGGTACAGTATTTGCATGTTTCGCAGGATTTAT   1298

BSNT_05835___   1299 TTTCTGGTATCCAAAAATGTTCGGCCACAAGCTGAACGAAAGAATTGGAA   1348
                     ||||||||||||.|||||||||||.||||||||||||||||||||.||||
RBAM_035420__   1299 TTTCTGGTATCCGAAAATGTTCGGTCACAAGCTGAACGAAAGAATCGGAA   1348

BSNT_05835___   1349 AATGGTTCTTCTGGATCTTTATGATCGGGTTCAATATTTGTTTCTTCCCG   1398
                     ||||||||||||||||||||||||||||.||.|||.|.|||||||||||.
RBAM_035420__   1349 AATGGTTCTTCTGGATCTTTATGATCGGATTTAATGTATGTTTCTTCCCT   1398

BSNT_05835___   1399 CAATATTTCTTGGGGCTTCAAGGCATGCCTCGCCGTATTTACACATACGG   1448
                     |||||.|||||||||||.|||||.||||||||||||||||||||.|||||
RBAM_035420__   1399 CAATACTTCTTGGGGCTGCAAGGTATGCCTCGCCGTATTTACACTTACGG   1448

BSNT_05835___   1449 ACCGAATGACGGCTGGACAACATTGAACTTTATCTCAACAGTCGGAGCTT   1498
                     ||||||||||||.|||||..||||.||||||||.|||||.||||||||.|
RBAM_035420__   1449 ACCGAATGACGGATGGACTGCATTAAACTTTATTTCAACTGTCGGAGCCT   1498

BSNT_05835___   1499 TCATGATGGGTGTAGGATTCTTAATCCTTTGCTATAACATCTACTACAGC   1548
                     |||||||||||||.||||||||||||||||||||.|||||||||||||||
RBAM_035420__   1499 TCATGATGGGTGTCGGATTCTTAATCCTTTGCTACAACATCTACTACAGC   1548

BSNT_05835___   1549 TTCCGTTACTCTACTCGTGAAATCAGCGGAGATTCATGGGGTGTGGGACG   1598
                     |||||.|||||||||||.||.||||||||||||||||||||.||||||||
RBAM_035420__   1549 TTCCGCTACTCTACTCGCGAGATCAGCGGAGATTCATGGGGCGTGGGACG   1598

BSNT_05835___   1599 TACGCTTGATTGGGCGACTTCTTCTGCGATTCCGCCGCATTACAACTTTG   1648
                     |||||||||.|||||||||||.||||||||||||||||||||||||||||
RBAM_035420__   1599 TACGCTTGAGTGGGCGACTTCATCTGCGATTCCGCCGCATTACAACTTTG   1648

BSNT_05835___   1649 CGGTGCTTCCTGAAGTCAAATCTCAAGATGCATTCCTGCATATGAAAGAA   1698
                     ||||||||||||||||.||||||||||||||.|.||||||..||||||||
RBAM_035420__   1649 CGGTGCTTCCTGAAGTGAAATCTCAAGATGCGTACCTGCAATTGAAAGAA   1698

BSNT_05835___   1699 GAAAAAACTGAATTAT--ACCCTGAAAGCAAATTCAAGAAAATCCATATG   1746
                     ||.|||||.||  |||  |.||.||||||||.||||||||||||||||||
RBAM_035420__   1699 GACAAAACGGA--TATTCATCCGGAAAGCAAGTTCAAGAAAATCCATATG   1746

BSNT_05835___   1747 CCAAGCAACTCAGGCAGACCGTTCTTTATGTCTGTTGCCTTCGGTCTCGC   1796
                     ||...||||||.||.||||||.|..|||||||.||.||.||||||.|.||
RBAM_035420__   1747 CCGCACAACTCCGGAAGACCGCTTATTATGTCAGTGGCGTTCGGTATTGC   1796

BSNT_05835___   1797 TGGCTTTGGACTTGTCTTTGAATGGTACTGGATGGGCGTAGTCGGATTGA   1846
                     .|||||.||||||||.||||||||||.||||||||||.|.|||||.||||
RBAM_035420__   1797 AGGCTTCGGACTTGTATTTGAATGGTTCTGGATGGGCATTGTCGGCTTGA   1846

BSNT_05835___   1847 TCGGAGTCCTGCTCTGCATGGTTCTGCGTTCATTCGAATACGACAACGGC   1896
                     ||||..|.|||||.||||||||.||.||||||||.|||||.|||||.|||
RBAM_035420__   1847 TCGGCATTCTGCTTTGCATGGTGCTTCGTTCATTTGAATATGACAATGGC   1896

BSNT_05835___   1897 TACTACATTAGTGTTGATGAAATAAAAGAGACGGAAAGAAAGATTTCCGA   1946
                     |||||.||...||||||.||||||||||||||||||||||||||||||||
RBAM_035420__   1897 TACTATATACCTGTTGAAGAAATAAAAGAGACGGAAAGAAAGATTTCCGA   1946

BSNT_05835___   1947 ATAA   1950
                     ||||
RBAM_035420__   1947 ATAA   1950


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