Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05834 and RBAM_035410
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:21
# Commandline: needle
# -asequence dna-align/BSNT_05834___qoxC.1.9828.seq
# -bsequence dna-align/RBAM_035410___qoxC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05834___qoxC-RBAM_035410___qoxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05834___qoxC-RBAM_035410___qoxC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05834___qoxC
# 2: RBAM_035410___qoxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 543/616 (88.1%)
# Similarity: 543/616 (88.1%)
# Gaps: 2/616 ( 0.3%)
# Score: 2411.0
#
#
#=======================================
BSNT_05834___ 1 ATGGAACATGCAGAACACGGCAATTCTAACGCGCCTATGGAATATCAATC 50
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_035410__ 1 ATGGAACATGCAGAACACGGCAATTCTAACGCGCCTATGGAATATCAATC 50
BSNT_05834___ 51 TGAAACCGGCAGACTTAATATTCTCGGGTTTTGGATCTTTTTAGGGGCAG 100
|||||||||||||||.||||||||||||||||||||||||||||||||||
RBAM_035410__ 51 TGAAACCGGCAGACTCAATATTCTCGGGTTTTGGATCTTTTTAGGGGCAG 100
BSNT_05834___ 101 AAATTGTGTTGTTCTCAACACTATTTGCAACCTTCTTCGTTCTTAAAAAC 150
|.||||||||||||||||||||||||||||||||||||||||||.|||..
RBAM_035410__ 101 AGATTGTGTTGTTCTCAACACTATTTGCAACCTTCTTCGTTCTTCAAAGA 150
BSNT_05834___ 151 AGAACAGCTGGAGGTGTCTTGCCAGACGAACTATTTGAAGTCAATCTGGT 200
||||||||.|||||.|||||.||.|..|||.||||||||||.||.||.||
RBAM_035410__ 151 AGAACAGCAGGAGGAGTCTTACCGGCTGAATTATTTGAAGTGAAGCTTGT 200
BSNT_05834___ 201 AATGATTATGACGTTCTTGCTGCTGATCAGCAGCTTTACCTGCGGGATCG 250
.|||||.|||||.|||.||||.|||||||||||.||.|||||||||||||
RBAM_035410__ 201 CATGATCATGACATTCCTGCTTCTGATCAGCAGTTTCACCTGCGGGATCG 250
BSNT_05834___ 251 CTGTTCATGAAATGCGCCGCGGAAGTTTAAAAGGCGTAGTCATTTGGACA 300
||||||||||||||||.||||||||||||||||||||.|||||||||||.
RBAM_035410__ 251 CTGTTCATGAAATGCGTCGCGGAAGTTTAAAAGGCGTCGTCATTTGGACG 300
BSNT_05834___ 301 ATTATCACTCTTCTTCTCGGTGCCGGCTTCGTCGGATGCGAGATCAACGA 350
||.||.||.|||||||||||.|||||||||||||||||.|||.|.|||||
RBAM_035410__ 301 ATCATTACGCTTCTTCTCGGCGCCGGCTTCGTCGGATGTGAGCTTAACGA 350
BSNT_05834___ 351 GTTTGTTCACTATGTACATGAAGGAGCGGCTCTCAGTACAAGTGCGTTCT 400
|||..|.||||||||||||||||||||..|||||.||||||||||.||||
RBAM_035410__ 351 GTTCATCCACTATGTACATGAAGGAGCATCTCTCGGTACAAGTGCTTTCT 400
BSNT_05834___ 401 GGTCTGGATTCTTTGTTTTACTTGGAACTCACGGAACTCACGTAACAATC 450
|||||||||||||.||..|.||.|||||.||||||||.||||||||.|||
RBAM_035410__ 401 GGTCTGGATTCTTCGTCCTTCTGGGAACGCACGGAACGCACGTAACGATC 450
BSNT_05834___ 451 GGGATTTTCTGGATCACAGGAATTCTGA-TTCAGTTGAAGAAACGCGGCT 499
||.||.||||||||..|.||.| |||.| |.||.||||||||||||||.|
RBAM_035410__ 451 GGTATCTTCTGGATTGCCGGCA-TCTTACTGCAATTGAAGAAACGCGGAT 499
BSNT_05834___ 500 TAACTCCGCAAACTTCATCTAAAATCTTTATCTCAAGCTTGTACTGGCAC 549
||||.|||||.||.||.||.|||||||||||||||||.||.|||||||||
RBAM_035410__ 500 TAACGCCGCAGACGTCTTCAAAAATCTTTATCTCAAGTTTATACTGGCAC 549
BSNT_05834___ 550 TTCTTAGATGTTGTATGGATTTTCATCTTTACAGGTGTCTATCTCATGGG 599
||||||||.|||||.|||||.||||||||||||||.|||||||||||.||
RBAM_035410__ 550 TTCTTAGACGTTGTTTGGATCTTCATCTTTACAGGCGTCTATCTCATCGG 599
BSNT_05834___ 600 ATTGGGGGGTCTGTAA 615
|||||||||.||.|||
RBAM_035410__ 600 ATTGGGGGGACTATAA 615
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