Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05826 and RBAM_035330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:20
# Commandline: needle
# -asequence dna-align/BSNT_05826___ywcH.1.9828.seq
# -bsequence dna-align/RBAM_035330___ywcH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05826___ywcH-RBAM_035330___ywcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05826___ywcH-RBAM_035330___ywcH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05826___ywcH
# 2: RBAM_035330___ywcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity: 758/1018 (74.5%)
# Similarity: 758/1018 (74.5%)
# Gaps: 32/1018 ( 3.1%)
# Score: 2729.0
#
#
#=======================================
BSNT_05826___ 1 ATGGTTTCATTAAGTATATTAGATCAATCTCCAGTATCAGAGGGCAGCAA 50
|||.||||||||||.|||||||||||||||||.||||||||.||.||...
RBAM_035330__ 1 ATGATTTCATTAAGCATATTAGATCAATCTCCTGTATCAGAAGGGAGGTC 50
BSNT_05826___ 51 TGCAGAAACGGC-CT------TACAGCAAACCGTTGCG-CTTGCCCAAGC 92
.||.||||..|| || |||||.|| | ||.||.||.|.
RBAM_035330__ 51 CGCGGAAAGTGCTCTGCGGAATACAGTAA--------GACTGGCGCAGGA 92
BSNT_05826___ 93 TGCTGAGGACCTTGGATATAAGAGATTTTGGGTTTCTGAGCATCACTTTT 142
.||.||..|.||.|||||||||||.||||||||.||.||||||||.||||
RBAM_035330__ 93 GGCGGAAAAGCTCGGATATAAGAGGTTTTGGGTGTCAGAGCATCATTTTT 142
BSNT_05826___ 143 CAAAACGGCTGGCAGGGTCCAGTCCTGAGGTGCTAATCAGTCATATAGCG 192
||.|.|||.||||.||.||.||.|||||.|||||.|||||.|||||.|||
RBAM_035330__ 143 CAGAGCGGTTGGCGGGTTCAAGCCCTGAAGTGCTGATCAGCCATATTGCG 192
BSNT_05826___ 193 GCGAAAACAAAGCGA-ATCCGTGTTGGATCAGGAGGAGTCATGCTGCCGC 241
||||||||.|| .|| ||.|||||.||.||.||.||.||||||||.||||
RBAM_035330__ 193 GCGAAAACGAA-TGAGATTCGTGTAGGCTCGGGCGGTGTCATGCTTCCGC 241
BSNT_05826___ 242 ATTACAGTGCTTATAAAGTAGCTGAAAACTTTCGTGTTCTGGAGGGGCTG 291
|||||||.||.|||||.||.||.||.||.||.||.||.||.||.|||.||
RBAM_035330__ 242 ATTACAGCGCATATAAGGTGGCGGAGAATTTCCGCGTGCTTGAAGGGTTG 291
BSNT_05826___ 292 ACACCAGGAAGAATTGACCTGGGGCTTGGCAGAGCACCGGGGGGAATGCC 341
||.||.||.|||||.||.||.||..|.||.|||||.|||||.||||||||
RBAM_035330__ 292 ACGCCGGGCAGAATCGATCTCGGATTAGGGAGAGCGCCGGGCGGAATGCC 341
BSNT_05826___ 342 GATTGCATCATGGGCGCTGAATGACGGCGGTAAGCGCAATGCTGATCAGT 391
|||.||||||||||||||||||||||||||.|||||.||.||||||||.|
RBAM_035330__ 342 GATCGCATCATGGGCGCTGAATGACGGCGGGAAGCGTAACGCTGATCAAT 391
BSNT_05826___ 392 ATCCGCAGCAAATCAAGGAGCTGACCATGTATTTGCATGATTTGGCGGAT 441
||||||||||..|....||||||.|.|||||||||||||||...||.||.
RBAM_035330__ 392 ATCCGCAGCAGCTTCGTGAGCTGGCGATGTATTTGCATGATGCAGCCGAC 441
BSNT_05826___ 442 GATAAACACCGTTTTCCGAATCTGACCGCTGCGCCGCATATTTCAACGGC 491
||.||.|||||||||||||||||||||||..|.||.|.||||...|||||
RBAM_035330__ 442 GACAATCACCGTTTTCCGAATCTGACCGCATCACCCCTTATTAAGACGGC 491
BSNT_05826___ 492 TCCGGATGTGTGGCTGCTCGGCTCATCTGGAGAAAGCGCGCTGCT---CG 538
.|||||.||.|||||.|||||.||.||.||.|||||||||||.|| ||
RBAM_035330__ 492 GCCGGAAGTCTGGCTTCTCGGTTCTTCGGGGGAAAGCGCGCTTCTGAGCG 541
BSNT_05826___ 539 CAGCTGAATCTGGCGCTGGCTATATGTTTGCCCATTTTATCAATGGAGAG 588
|| |||...||.||.||||||||||||||.||.|||||.||||||||.
RBAM_035330__ 542 CA---GAAATGGGAGCAGGCTATATGTTTGCTCACTTTATTAATGGAGAA 588
BSNT_05826___ 589 GGCGGAGAGGGTACTGTCAG-ACAGTATAAGAGGAGATTCAAACCATCTG 637
||||||||..|.|| |.||| |||.||||||.|.|||||.|||||.||||
RBAM_035330__ 589 GGCGGAGAAAGCAC-GACAGCACAATATAAGCGCAGATTTAAACCTTCTG 637
BSNT_05826___ 638 TGTTAGGAGATACGCCTCGAGCGGCAGTTGC--TGTTTTTGTTCTTTGTG 685
|.||||||.|....||...|.|.||.||.|| |||||||| ||.||.|
RBAM_035330__ 638 TATTAGGAAAAGAACCAAAAACAGCCGTGGCGGTGTTTTTG--CTGTGCG 685
BSNT_05826___ 686 CTGACACGGAGGAGAAGGCAGAGGAGCTTGGGGCTGTGCTTGATTTTACA 735
|.||||||||||||||.||.|||||.||.|.|||.||..|.||||.|||.
RBAM_035330__ 686 CGGACACGGAGGAGAAAGCGGAGGAACTCGCGGCCGTCATGGATTATACG 735
BSNT_05826___ 736 CTTTTGGCGGGAGAGCAGGGTATTCCTTTAGAGGGAGTCCCTTCGTATGA 785
||..|.|||||.||.|||||.|||||..|..|.||.||.||.||.||.||
RBAM_035330__ 736 CTGCTTGCGGGTGAACAGGGGATTCCGCTTCACGGCGTACCGTCTTACGA 785
BSNT_05826___ 786 AGCTGTTCGGAAAAATACGTATTCTCCTTATGAACAGAGACGAATTGCTG 835
|.|.||.||....||||||||..|.||.||||||||.|||||||||||.|
RBAM_035330__ 786 AACCGTCCGCGGCAATACGTACACACCGTATGAACAAAGACGAATTGCCG 835
BSNT_05826___ 836 ATAATCGAAATCGAATGATTGTTGGTACGAAAGAACAGGT-TAAGAAGCG 884
|||||||.|||||||||||..|.||.|||||..||||.|| .||||| |.
RBAM_035330__ 836 ATAATCGGAATCGAATGATCATCGGAACGAAGAAACAAGTGAAAGAA-CA 884
BSNT_05826___ 885 GCTGTTAGCTTTGAGTAAAGCGTATGAAACAGAGGAAATCATGGTGGTGA 934
|.|..|.|||.|.||||||||.||.|.|||.||.|||.|.||||..||||
RBAM_035330__ 885 GATTCTGGCTCTCAGTAAAGCATACGGAACGGAAGAAGTGATGGCTGTGA 934
BSNT_05826___ 935 CCATCACGCATCATTTTGAAGATAAGCTCCGATCGTATCGATTATTGCAG 984
||||.||.|||||.|||||||||||.||.|..||.||.||..|..|.|..
RBAM_035330__ 935 CCATTACTCATCACTTTGAAGATAAACTTCAGTCATACCGGCTGCTTCGT 984
BSNT_05826___ 985 GAGGCGTTTGCTGACTGA 1002
||.||.|||||.||.|||
RBAM_035330__ 985 GAAGCTTTTGCCGAATGA 1002
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