Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05826 and RBAM_035330

See Amino acid alignment / Visit BSNT_05826 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:20
# Commandline: needle
#    -asequence dna-align/BSNT_05826___ywcH.1.9828.seq
#    -bsequence dna-align/RBAM_035330___ywcH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05826___ywcH-RBAM_035330___ywcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05826___ywcH-RBAM_035330___ywcH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05826___ywcH
# 2: RBAM_035330___ywcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity:     758/1018 (74.5%)
# Similarity:   758/1018 (74.5%)
# Gaps:          32/1018 ( 3.1%)
# Score: 2729.0
# 
#
#=======================================

BSNT_05826___      1 ATGGTTTCATTAAGTATATTAGATCAATCTCCAGTATCAGAGGGCAGCAA     50
                     |||.||||||||||.|||||||||||||||||.||||||||.||.||...
RBAM_035330__      1 ATGATTTCATTAAGCATATTAGATCAATCTCCTGTATCAGAAGGGAGGTC     50

BSNT_05826___     51 TGCAGAAACGGC-CT------TACAGCAAACCGTTGCG-CTTGCCCAAGC     92
                     .||.||||..|| ||      |||||.||        | ||.||.||.|.
RBAM_035330__     51 CGCGGAAAGTGCTCTGCGGAATACAGTAA--------GACTGGCGCAGGA     92

BSNT_05826___     93 TGCTGAGGACCTTGGATATAAGAGATTTTGGGTTTCTGAGCATCACTTTT    142
                     .||.||..|.||.|||||||||||.||||||||.||.||||||||.||||
RBAM_035330__     93 GGCGGAAAAGCTCGGATATAAGAGGTTTTGGGTGTCAGAGCATCATTTTT    142

BSNT_05826___    143 CAAAACGGCTGGCAGGGTCCAGTCCTGAGGTGCTAATCAGTCATATAGCG    192
                     ||.|.|||.||||.||.||.||.|||||.|||||.|||||.|||||.|||
RBAM_035330__    143 CAGAGCGGTTGGCGGGTTCAAGCCCTGAAGTGCTGATCAGCCATATTGCG    192

BSNT_05826___    193 GCGAAAACAAAGCGA-ATCCGTGTTGGATCAGGAGGAGTCATGCTGCCGC    241
                     ||||||||.|| .|| ||.|||||.||.||.||.||.||||||||.||||
RBAM_035330__    193 GCGAAAACGAA-TGAGATTCGTGTAGGCTCGGGCGGTGTCATGCTTCCGC    241

BSNT_05826___    242 ATTACAGTGCTTATAAAGTAGCTGAAAACTTTCGTGTTCTGGAGGGGCTG    291
                     |||||||.||.|||||.||.||.||.||.||.||.||.||.||.|||.||
RBAM_035330__    242 ATTACAGCGCATATAAGGTGGCGGAGAATTTCCGCGTGCTTGAAGGGTTG    291

BSNT_05826___    292 ACACCAGGAAGAATTGACCTGGGGCTTGGCAGAGCACCGGGGGGAATGCC    341
                     ||.||.||.|||||.||.||.||..|.||.|||||.|||||.||||||||
RBAM_035330__    292 ACGCCGGGCAGAATCGATCTCGGATTAGGGAGAGCGCCGGGCGGAATGCC    341

BSNT_05826___    342 GATTGCATCATGGGCGCTGAATGACGGCGGTAAGCGCAATGCTGATCAGT    391
                     |||.||||||||||||||||||||||||||.|||||.||.||||||||.|
RBAM_035330__    342 GATCGCATCATGGGCGCTGAATGACGGCGGGAAGCGTAACGCTGATCAAT    391

BSNT_05826___    392 ATCCGCAGCAAATCAAGGAGCTGACCATGTATTTGCATGATTTGGCGGAT    441
                     ||||||||||..|....||||||.|.|||||||||||||||...||.||.
RBAM_035330__    392 ATCCGCAGCAGCTTCGTGAGCTGGCGATGTATTTGCATGATGCAGCCGAC    441

BSNT_05826___    442 GATAAACACCGTTTTCCGAATCTGACCGCTGCGCCGCATATTTCAACGGC    491
                     ||.||.|||||||||||||||||||||||..|.||.|.||||...|||||
RBAM_035330__    442 GACAATCACCGTTTTCCGAATCTGACCGCATCACCCCTTATTAAGACGGC    491

BSNT_05826___    492 TCCGGATGTGTGGCTGCTCGGCTCATCTGGAGAAAGCGCGCTGCT---CG    538
                     .|||||.||.|||||.|||||.||.||.||.|||||||||||.||   ||
RBAM_035330__    492 GCCGGAAGTCTGGCTTCTCGGTTCTTCGGGGGAAAGCGCGCTTCTGAGCG    541

BSNT_05826___    539 CAGCTGAATCTGGCGCTGGCTATATGTTTGCCCATTTTATCAATGGAGAG    588
                     ||   |||...||.||.||||||||||||||.||.|||||.||||||||.
RBAM_035330__    542 CA---GAAATGGGAGCAGGCTATATGTTTGCTCACTTTATTAATGGAGAA    588

BSNT_05826___    589 GGCGGAGAGGGTACTGTCAG-ACAGTATAAGAGGAGATTCAAACCATCTG    637
                     ||||||||..|.|| |.||| |||.||||||.|.|||||.|||||.||||
RBAM_035330__    589 GGCGGAGAAAGCAC-GACAGCACAATATAAGCGCAGATTTAAACCTTCTG    637

BSNT_05826___    638 TGTTAGGAGATACGCCTCGAGCGGCAGTTGC--TGTTTTTGTTCTTTGTG    685
                     |.||||||.|....||...|.|.||.||.||  ||||||||  ||.||.|
RBAM_035330__    638 TATTAGGAAAAGAACCAAAAACAGCCGTGGCGGTGTTTTTG--CTGTGCG    685

BSNT_05826___    686 CTGACACGGAGGAGAAGGCAGAGGAGCTTGGGGCTGTGCTTGATTTTACA    735
                     |.||||||||||||||.||.|||||.||.|.|||.||..|.||||.|||.
RBAM_035330__    686 CGGACACGGAGGAGAAAGCGGAGGAACTCGCGGCCGTCATGGATTATACG    735

BSNT_05826___    736 CTTTTGGCGGGAGAGCAGGGTATTCCTTTAGAGGGAGTCCCTTCGTATGA    785
                     ||..|.|||||.||.|||||.|||||..|..|.||.||.||.||.||.||
RBAM_035330__    736 CTGCTTGCGGGTGAACAGGGGATTCCGCTTCACGGCGTACCGTCTTACGA    785

BSNT_05826___    786 AGCTGTTCGGAAAAATACGTATTCTCCTTATGAACAGAGACGAATTGCTG    835
                     |.|.||.||....||||||||..|.||.||||||||.|||||||||||.|
RBAM_035330__    786 AACCGTCCGCGGCAATACGTACACACCGTATGAACAAAGACGAATTGCCG    835

BSNT_05826___    836 ATAATCGAAATCGAATGATTGTTGGTACGAAAGAACAGGT-TAAGAAGCG    884
                     |||||||.|||||||||||..|.||.|||||..||||.|| .||||| |.
RBAM_035330__    836 ATAATCGGAATCGAATGATCATCGGAACGAAGAAACAAGTGAAAGAA-CA    884

BSNT_05826___    885 GCTGTTAGCTTTGAGTAAAGCGTATGAAACAGAGGAAATCATGGTGGTGA    934
                     |.|..|.|||.|.||||||||.||.|.|||.||.|||.|.||||..||||
RBAM_035330__    885 GATTCTGGCTCTCAGTAAAGCATACGGAACGGAAGAAGTGATGGCTGTGA    934

BSNT_05826___    935 CCATCACGCATCATTTTGAAGATAAGCTCCGATCGTATCGATTATTGCAG    984
                     ||||.||.|||||.|||||||||||.||.|..||.||.||..|..|.|..
RBAM_035330__    935 CCATTACTCATCACTTTGAAGATAAACTTCAGTCATACCGGCTGCTTCGT    984

BSNT_05826___    985 GAGGCGTTTGCTGACTGA   1002
                     ||.||.|||||.||.|||
RBAM_035330__    985 GAAGCTTTTGCCGAATGA   1002


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