Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05819 and RBAM_035290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:20
# Commandline: needle
# -asequence dna-align/BSNT_05819___sacP.1.9828.seq
# -bsequence dna-align/RBAM_035290___sacP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05819___sacP-RBAM_035290___sacP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05819___sacP-RBAM_035290___sacP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05819___sacP
# 2: RBAM_035290___sacP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1422
# Identity: 1025/1422 (72.1%)
# Similarity: 1025/1422 (72.1%)
# Gaps: 75/1422 ( 5.3%)
# Score: 3609.5
#
#
#=======================================
BSNT_05819___ 1 ATGGATTACAAAGAGACTGCAAAACGCCTCATTGAGCTTCTCGGAGGGAA 50
|||.||||..||||.||.|||||||..||.||..|||.|.||||||||.|
RBAM_035290__ 1 ATGAATTATCAAGAAACGGCAAAACAGCTTATCAAGCATATCGGAGGGGA 50
BSNT_05819___ 51 AGAAAATATTATCAGCGCGGCTCATTGTGCAACAAGACTGCGTTTAGTGA 100
|..||||||||||||||||.|.|||||.||.||..|.||..|..|.||.|
RBAM_035290__ 51 ATCAAATATTATCAGCGCGACACATTGCGCGACGCGGCTCAGGCTCGTCA 100
BSNT_05819___ 101 TGAAAGATGAATCAAAGATAGATCAAGCA------CAAGTAGAAGAGCTT 144
|..||||||| |.||| ||||||..|| || |.|||||..|.
RBAM_035290__ 101 TTCAAGATGA---ACAGA-AGATCAGCCAGGCCGGCA--TTGAAGAAATA 144
BSNT_05819___ 145 GATGGCGTCAAAGGGGCTTTCAGCAGCTCTGGCCAGTACCAGATCATTTT 194
||.|||||.||||||||||||||||||||.||.||.||.|||||.||.||
RBAM_035290__ 145 GAAGGCGTAAAAGGGGCTTTCAGCAGCTCGGGGCAATATCAGATTATATT 194
BSNT_05819___ 195 CGGAACAGGCCTTGTGAATAAAGTATTCGATGCCTTTGCTAAAGAAGCTG 244
|||.||.|||||||||||||||||.|..||.||.|||.|.||||||||.|
RBAM_035290__ 195 CGGCACCGGCCTTGTGAATAAAGTGTATGACGCTTTTTCAAAAGAAGCCG 244
BSNT_05819___ 245 ATATCGAGCGTGAAGA-------ACACGTAAATCATCAGGATGCGGCAAA 287
||.|.|.|||.||.|| ||| ||||||||.||.||.||
RBAM_035290__ 245 ATTTGGGGCGGGAGGATCGTGAGACA-------CATCAGGACGCAGCGAA 287
BSNT_05819___ 288 AGAAAAGCTGAATCCCGCTGCGAGATTTGCGAAAACGCTTTCTAATATTT 337
|.|||||||||||||.||.||.|||||||||||.||.||.|||||.||.|
RBAM_035290__ 288 AAAAAAGCTGAATCCGGCCGCAAGATTTGCGAAGACACTGTCTAACATAT 337
BSNT_05819___ 338 TTGTTCCAATCATCCCGGCTATTGTAGCCAGCGGCCTATTAATGGGATTG 387
|.|||||.|||||.||||||||.||.||.|||||.||.||||||||..||
RBAM_035290__ 338 TCGTTCCCATCATTCCGGCTATCGTGGCAAGCGGACTTTTAATGGGGCTG 387
BSNT_05819___ 388 CTGGGTATGATCAATGCGTTTCATTGG----ATGAGCAAGGATTCTGCGC 433
||.||.|||||.||.||.|||||.||| .|||.||| ||..|||
RBAM_035290__ 388 CTCGGCATGATGAAGGCTTTTCACTGGGTGTCTGAACAA----TCGTCGC 433
BSNT_05819___ 434 TTTTGCAGCTGCTTGATATGTTTTCAAGTGCAGCATTTATTTTCTTGCC- 482
|.||..||||..|.||.|||||||||||.||.||.|||||.|||.||||
RBAM_035290__ 434 TGTTTAAGCTTTTAGACATGTTTTCAAGCGCGGCGTTTATCTTCCTGCCC 483
BSNT_05819___ 483 -GATTCTAATCGGGGTCAGCGCTTCAAAAGAGTTTGGCAGCAATCCATAC 531
.|||| ||||||.|||||||..|.||.||.||||||.|.|||.|.||.
RBAM_035290__ 484 GTATTC--ATCGGGTTCAGCGCGGCGAAGGAATTTGGCGGTAATGCCTAT 531
BSNT_05819___ 532 TTGGGAGCGGTCATCGGGGGAATCATGATTCATCCGACTCTTTTAAATCC 581
.|.||.||.||..||||||||||.|||||.||||||.|.|||||.|||||
RBAM_035290__ 532 CTCGGTGCCGTGCTCGGGGGAATTATGATCCATCCGGCGCTTTTGAATCC 581
BSNT_05819___ 582 ATGGGGATTGGCGGAAGCGACACCTGATTACATGCATCTTTTCGGATTTG 631
.|||||..|.|||||.||..|.|||||||..|||||.||||||||.||.|
RBAM_035290__ 582 GTGGGGGCTTGCGGATGCATCGCCTGATTTTATGCAGCTTTTCGGCTTCG 631
BSNT_05819___ 632 ATATCGCGCTTCTCGGCTACCAGGGAACTGTTATCCCTGTCCTGCTTGCG 681
|.||.|||||.||||||||.||.||.||.||.|||||.||.|||.|.||.
RBAM_035290__ 632 ACATTGCGCTGCTCGGCTATCAAGGGACGGTCATCCCCGTACTGTTAGCC 681
BSNT_05819___ 682 GTGTATGTGATGAGCAAGGTAGAGAAATGG-ACGAGAAAAGTGGTTCCAC 730
||.||..|.||||||||.||.|| |||.|| |||||||||.|.||.||.|
RBAM_035290__ 682 GTTTACATTATGAGCAAAGTGGA-AAAGGGCACGAGAAAAATTGTGCCTC 730
BSNT_05819___ 731 ATGCGGTAGATTTGCTTGTTACACCATTTGTTACTGTAATTGTCACCGGG 780
|.||..|.|||||..|.||.||.||.|||||.||.||.||||||||.||.
RBAM_035290__ 731 ACGCATTCGATTTATTGGTCACGCCGTTTGTCACGGTGATTGTCACGGGA 780
BSNT_05819___ 781 TTTGTTGCTGTTATCGCGATTGGCCCTCTAGGCAGAGCGCTTGGCTCCGG 830
|||.|..|..|||||||.||.||.||.||.|||||.|||.|.||.||.||
RBAM_035290__ 781 TTTATCACCTTTATCGCAATCGGTCCGCTTGGCAGGGCGATCGGATCAGG 830
BSNT_05819___ 831 CATTACGGTTGCTTTAACTTATGTGTATGACCATGCCGGTTTTGTTGCGG 880
||||||.||..|..|.||.|||||||||||.|||||.||..|||||||.|
RBAM_035290__ 831 CATTACCGTCTCGCTGACATATGTGTATGATCATGCGGGCATTGTTGCCG 880
BSNT_05819___ 881 GCCTGATTTTCGGGGGCACGTATTCACTCATCGTGCTGACAGGCGTTCAT 930
|.|||.|||||||.||....|||.|.||.||.|||||.||.||.||.|||
RBAM_035290__ 881 GACTGCTTTTCGGCGGTCTTTATCCGCTTATTGTGCTTACCGGTGTGCAT 930
BSNT_05819___ 931 CATAGCTTCCATGCGATTGAGGCTGGGCTTATTGCAGATATAGGAAAAAA 980
||.|||||.||||||||||||||.||.||.||.||.|||.|.||.|.|||
RBAM_035290__ 931 CACAGCTTTCATGCGATTGAGGCCGGCCTCATCGCTGATTTGGGCAGAAA 980
BSNT_05819___ 981 CTACTTGCTGCCGATCTGGTCAATGGCGAATGTCGCACAGGGCGGGGCAG 1030
|||..|.||.||.||||||||.||||||||||||||.|||||||.|||.|
RBAM_035290__ 981 CTATATCCTTCCTATCTGGTCGATGGCGAATGTCGCTCAGGGCGCGGCGG 1030
BSNT_05819___ 1031 GTCTTGCCGTCTTCTTTATGGCGAAAAAGGCAAAGACAAAAGAAATCGCG 1080
|.||.||.||.||.|||.||.|||||||.||.||.|..|||||||||||.
RBAM_035290__ 1031 GACTGGCTGTATTTTTTCTGACGAAAAAAGCGAAAATGAAAGAAATCGCT 1080
BSNT_05819___ 1081 CTTCCGGCAGCATTTTCCGCTTTTCTCGGCATTACTGAGCCCGTCATATT 1130
||.|||||.||||||||||||||||||||..|.||.||.||.|||||.||
RBAM_035290__ 1081 CTGCCGGCCGCATTTTCCGCTTTTCTCGGTGTAACCGAACCAGTCATTTT 1130
BSNT_05819___ 1131 CGGAGTCAATCTTCGCTACCGAAAACCGTTTATCGCCGCGATGATCGGAG 1180
|||.||.||.||..|.|||||.||.|||||||||||.|..||||||||.|
RBAM_035290__ 1131 CGGTGTGAACCTAAGATACCGCAAGCCGTTTATCGCGGGAATGATCGGCG 1180
BSNT_05819___ 1181 GCGCATTGGGTGGGGCATATGTCGTCTTTACACATGTAGCTGCAAACGCT 1230
|.||..||||.||.||.||||||||..|.||...|||.||.||.||.||.
RBAM_035290__ 1181 GAGCGCTGGGCGGAGCCTATGTCGTGGTGACCGGTGTCGCCGCCAATGCC 1230
BSNT_05819___ 1231 TACGGGTTAACGGGTATTCCGATGATCGCCATTGCGGCTCCGTTTGGCTT 1280
|||||..|.||.||.|||||||||||.|||||..||||||||.|.|| ||
RBAM_035290__ 1231 TACGGTCTGACCGGAATTCCGATGATTGCCATCACGGCTCCGCTCGG-TT 1279
BSNT_05819___ 1281 CAGCAA--CTTGATTCACTATCTGATTGGCATGGCGATTGCGGCAGTGTC 1328
.||.|| ||| ||..||||||||||.||.||||..||.||..|.||.||
RBAM_035290__ 1280 TAGGAAATCTT-ATAAACTATCTGATCGGAATGGGCATCGCCTCTGTCTC 1328
BSNT_05819___ 1329 AGCGTTCATCGCAGCATTTGTCATGAAGATTAATGAGGATGAGGAG---- 1374
.|||||.||.||.||.| |.||| ||| ||||
RBAM_035290__ 1329 GGCGTTTATTGCCGCTT---------ACATT-------ATG-GGAGCTAA 1361
BSNT_05819___ 1375 AGGAAA----------AAATGA 1386
||.||| ||||||
RBAM_035290__ 1362 AGAAAAGGAGGCCGTCAAATGA 1383
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