Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05817 and RBAM_035280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:19
# Commandline: needle
# -asequence dna-align/BSNT_05817___sacA.1.9828.seq
# -bsequence dna-align/RBAM_035280___sacA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05817___sacA-RBAM_035280___sacA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05817___sacA-RBAM_035280___sacA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05817___sacA
# 2: RBAM_035280___sacA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1500
# Identity: 1046/1500 (69.7%)
# Similarity: 1046/1500 (69.7%)
# Gaps: 120/1500 ( 8.0%)
# Score: 3425.5
#
#
#=======================================
BSNT_05817___ 1 ATGACAGCACATGATCAGGAGCTTCGTCGCCGGGCTTATGAAGAAGTGGA 50
||||...|||..|||||.|||||.||.|..|.||| |||.||||.|
RBAM_035280__ 1 ATGAGGACACCGGATCAAGAGCTGCGCCTGCAGGC---TGAGGAAGCG-- 45
BSNT_05817___ 51 GAAAAAAGAGCCCATCGCTG----ACAGC-------GATCCGCACCGCCA 89
||||||| |.||..| ||||| |||||..|||||||
RBAM_035280__ 46 --AAAAAGA----AGCGGGGAGAAACAGCCGCGTCAGATCCATACCGCCA 89
BSNT_05817___ 90 GCATTTTCATATCATGCCGCCGGTTGGGCTGCTGAATGACCCGAATGGCC 139
|.|.|.||||||.|||||||||||.|||||..|.|||||.|||||.|||.
RBAM_035280__ 90 GAACTATCATATTATGCCGCCGGTCGGGCTTTTAAATGATCCGAACGGCG 139
BSNT_05817___ 140 TGATTTATTGGAAGGGCAGCTATCATGTATTCTTTCAGTGGCAGCCGTTT 189
||||..|.|||||.|||...|||||..|.||.|||||.||||||||.|||
RBAM_035280__ 140 TGATCCAATGGAACGGCGTATATCACTTGTTTTTTCAATGGCAGCCATTT 189
BSNT_05817___ 190 CAGACGGGGCACGGCGCAAAATTTTGGGGGCATTATACGACACAGGATGT 239
||.||||||||||||||.||||||||||.||||...|||||..|||||.|
RBAM_035280__ 190 CATACGGGGCACGGCGCGAAATTTTGGGCGCATGTGACGACGAAGGATTT 239
BSNT_05817___ 240 TGTGAATTGGAAGCGGGAAGAGATTGCGCTGGCTCCGAGTGATTGGTTTG 289
.||..|.|||||...||||||.||.|||||.||.|||.||||.||||.||
RBAM_035280__ 240 CGTTGAGTGGAAAGAGGAAGAAATCGCGCTTGCGCCGGGTGAGTGGTATG 289
BSNT_05817___ 290 ATAAAAACGGCTGCTACTCGGGCAGCGCTGTCACGAAAGACGATCGGCTC 339
|.|||||||||||.||.||.||.|||||..||...|||||||..||||||
RBAM_035280__ 290 ACAAAAACGGCTGTTATTCCGGAAGCGCCATCGAAAAAGACGGGCGGCTC 339
BSNT_05817___ 340 TATCTGTTTTACACAGGAAATGTCAGGGATCAG-GATGGAAACCGGGAAA 388
|..|||.|.||||||||.||||||.|.|| |.| ||.||.||.|||||||
RBAM_035280__ 340 TGCCTGATGTACACAGGCAATGTCCGTGA-CGGAGAAGGCAATCGGGAAA 388
BSNT_05817___ 389 CGTATCAATGCCTTGCTGTTTCTGACGACGGGCT-GTCCTTTGAGAAAAA 437
|.|||||||||||.||.||.||.||.||||||.| || .|||||.|||||
RBAM_035280__ 389 CATATCAATGCCTCGCCGTATCCGAAGACGGGATCGT-ATTTGAAAAAAA 437
BSNT_05817___ 438 GGGTGTTGTCGCCCGCCTTCCGGAAGGATATACGGCGCATTTTCGCGATC 487
.||.||.|||||.||.||.||||||||.|||||.||.|||||.||.||||
RBAM_035280__ 438 AGGAGTCGTCGCGCGTCTCCCGGAAGGCTATACCGCTCATTTCCGTGATC 487
BSNT_05817___ 488 CGAAGGTATGGGAGCATGAAGGCACATGGTATATGGTGATTGGTGCGCAA 537
|||||||.|||.||.|.||.||..|.|..||.||||||.|.||.|||||.
RBAM_035280__ 488 CGAAGGTTTGGAAGAAAGACGGAGCGTATTACATGGTGCTCGGCGCGCAG 537
BSNT_05817___ 538 ACAGAGAATTTGAAAG------GGCAG-GCTGTATTGTTTGCTTCTGATA 580
||||| |||| ||.|| |||||.|||||..|.||.||.|
RBAM_035280__ 538 ACAGA-------AAAGCTCACCGGAAGCGCTGTGTTGTTCACATCAGAGA 580
BSNT_05817___ 581 ACCTGAGTGAGTGGAGATTTCTTGGCCCGATAACCGGCGCGGGCTTCAAC 630
||.|||..||.||||..|||||.||..||||..|.||.||||.||.|..|
RBAM_035280__ 581 ACTTGACGGATTGGACGTTTCTCGGTTCGATTGCGGGAGCGGACTCCGGC 630
BSNT_05817___ 631 GGGCT--GGACGATTTTGGATACATGTGGGAATGTCCGGATTTGTTTTCC 678
||.|| ||.| .||.||.||.||||||||||||||.||..||||||||
RBAM_035280__ 631 GGTCTCGGGTC--ATTCGGTTATATGTGGGAATGTCCCGACCTGTTTTCC 678
BSNT_05817___ 679 CTTCAAGGATCGGACGTGCTGATTGTTTCGCCTCAAGGGCTTGAGGCTGA 728
|||.|.|||.|.|||||||||.|.||.|..||.||.||||||||.||.||
RBAM_035280__ 679 CTTGACGGAACCGACGTGCTGCTCGTATGTCCGCAGGGGCTTGAAGCCGA 728
BSNT_05817___ 729 CGGTTTCCGTTATCAGAACGTATATCAATCA----GGTTATTTTGTCGGG 774
|||..|....|||||.||| |.|.|.|| ||.|||||..||||.
RBAM_035280__ 729 CGGGATAGAATATCATAAC----AGCCACCAGGCGGGCTATTTCCTCGGC 774
BSNT_05817___ 775 TGTCTCGATTATAACA----AGCCTGAACTGAAGCATGGTGAATTTACGG 820
.|.||..|| ||| .|||.|||.|.|||||.|||||||||||||
RBAM_035280__ 775 AGGCTGCAT----ACAGAGCCGCCAGAATTTAAGCACGGTGAATTTACGG 820
BSNT_05817___ 821 AGCTTGATCA-AGGTTTTGATTTTTACGCGCCGCAAACACTTGAAGATAA 869
||||||| || |||.|||||.|||||||||.||||.||.||.||||||.|
RBAM_035280__ 821 AGCTTGA-CAGAGGATTTGACTTTTACGCGGCGCAGACGCTGGAAGATGA 869
BSNT_05817___ 870 TCAGGG-CAGACGAATTTTGTTTGCATGGATGGCTGTGCCTGACCAGGAT 918
|.|||| |.|| |||||.||||.||.|||||||..||.||.||.|||.||
RBAM_035280__ 870 TAAGGGACGGA-GAATTCTGTTCGCGTGGATGGGCGTTCCGGATCAGCAT 918
BSNT_05817___ 919 GAAGGATC--TCATCCGACGATTGACTATCACTGGATTCACTGCATGACG 966
| |||| | .||||||||...||..||||||||||||||||||.|.||.
RBAM_035280__ 919 G-AGGA-CAAACATCCGACCCATGCGTATCACTGGATTCACTGCTTAACA 966
BSNT_05817___ 967 CTGCCGAGACAGCTGACAATATC---AGGCGAGAAGCTGATTCAGCAGCC 1013
.||||||||||||||.||.|.|| .||| |||| |.||.||||..||
RBAM_035280__ 967 ATGCCGAGACAGCTGTCACTGTCCAACGGC-AGAA--TCATACAGCGCCC 1013
BSNT_05817___ 1014 GCTGCCTGAGCTGAAAGCCATGCGCAGAAATGA-GAAAAAAATACA---- 1058
|||..|.||..|||||.| .|||.|.||.|| |||.|||| .||
RBAM_035280__ 1014 GCTTTCGGAAATGAAATC---ACGCCGCAAGGATGAACAAAA-GCACCGT 1059
BSNT_05817___ 1059 CATCAATATGCATGGATCATCTGGTACGCTTCCAGTGGAAAAGCCTGAAA 1108
|.||||| ||.||.|.||.||| |||.||.|||.| .|||||
RBAM_035280__ 1060 CTTCAAT-TGAATTGCTCGTCT-GTAAGCCTCCCG---------GTGAAA 1098
BSNT_05817___ 1109 GA----------GCTGAGATTCTGCTGGAAGACATTCA--TACGGAGTCT 1146
|| |||||..|.||||||||.|||| ||| |.| ||.||.
RBAM_035280__ 1099 GATGCGTCCCGGGCTGAAGTGCTGCTGGAGGACA-TCACTTGC-GAATCC 1146
BSNT_05817___ 1147 GGCTTTTCAATCAGTATCCGCGGAACGGCTACGTTTTCCTTCCAAAAAGA 1196
||.|||..||||...||.||.||..|.||...||||...||.||..|.||
RBAM_035280__ 1147 GGTTTTGAAATCTCAATTCGGGGCGCAGCCCGGTTTATATTTCATCAGGA 1196
BSNT_05817___ 1197 CGAGGGGATTGTTACGCTGGAACGAAAGAGCTTTGA-CG-----GAAAAA 1240
.||||||.|.|.|..||||||.|| .|..|||||.| || ||||||
RBAM_035280__ 1197 AGAGGGGCTGGCTGTGCTGGAGCG-CACCGCTTTCAGCGGAGAAGAAAAA 1245
BSNT_05817___ 1241 GAAAAGAGTCGAGACATTGCCGCATCAAGGATTTGCATACCGTACACATG 1290
||||| ||||...|||..|||||..||..|||||.||||.||..|.
RBAM_035280__ 1246 GAAAA-----GAGAAGCTGCGCCATCAGCGAGGTGCATTCCGTGCAGCTC 1290
BSNT_05817___ 1291 TTTCTCGACGCGTCATCTGTGGAAATCTTTATCAATAACGGAGAAGAGGT 1340
|||||.||.||.||.||..|.|||.|.|||.|.|||.|.|||||||||||
RBAM_035280__ 1291 TTTCTGGATGCATCCTCGATTGAATTGTTTTTGAATGATGGAGAAGAGGT 1340
BSNT_05817___ 1341 CTTTAGTGCGAGATATTTTCCTTTCCCGGGAAATCATGAAGTAACAGCCA 1390
.||.|||||.||||||||||||||||||||||||.||||.|||||.|.||
RBAM_035280__ 1341 ATTCAGTGCCAGATATTTTCCTTTCCCGGGAAATGATGACGTAACCGTCA 1390
BSNT_05817___ 1391 GTTCGACCGGGAAATCTGAAATGAATGTCTTAATTTGGACACTTATGTAG 1440
.||||.|.||.|||.|.|||||.||||..|.|||||||.|||||.|||||
RBAM_035280__ 1391 CTTCGGCAGGAAAAACGGAAATAAATGGATCAATTTGGGCACTTTTGTAG 1440
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