Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05807 and RBAM_035190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:19
# Commandline: needle
# -asequence dna-align/BSNT_05807___ywdJ.1.9828.seq
# -bsequence dna-align/RBAM_035190___ywdJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05807___ywdJ-RBAM_035190___ywdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05807___ywdJ-RBAM_035190___ywdJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05807___ywdJ
# 2: RBAM_035190___ywdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1357
# Identity: 987/1357 (72.7%)
# Similarity: 987/1357 (72.7%)
# Gaps: 71/1357 ( 5.2%)
# Score: 3380.5
#
#
#=======================================
BSNT_05807___ 1 GTGAAATTGGTTCTTGGCGCGCTGCAATGGACAGCGTTTATCATTGCTGC 50
.|||||.||.|.||.||.|...||||||||||.||.|||||.|||||.||
RBAM_035190__ 1 TTGAAACTGATACTCGGGGGTTTGCAATGGACGGCATTTATGATTGCGGC 50
BSNT_05807___ 51 GGCGATAGTTGTTCCGGTGGCGGTTGCCCAGTCGTTTCATCTGGATCACT 100
.|||||.||.|||||.||.||..|.||.||.||.|||||..||.|.||..
RBAM_035190__ 51 TGCGATTGTGGTTCCTGTCGCCATCGCACAATCATTTCACTTGAACCATG 100
BSNT_05807___ 101 CAGATTCTGCAAGATTGATTCAAAGCACTTTTTTTGTACTGGGAATTGCC 150
|.||||||||...|||||||||.|||||.||||||||.||.||..|.|||
RBAM_035190__ 101 CCGATTCTGCCGCATTGATTCAGAGCACATTTTTTGTGCTTGGCGTCGCC 150
BSNT_05807___ 151 GCCGTCATTCAGTGTTTGAAAGGCCACAGACTGCCGATTAATGAAAGCCC 200
||.|||||.||.|||.|..|.||.||..|.||||||||||||||||||||
RBAM_035190__ 151 GCGGTCATCCAATGTCTCCAGGGACATCGTCTGCCGATTAATGAAAGCCC 200
BSNT_05807___ 201 AGCCGGCTTGTGGTGGGGAGTGTATACGATTTACGCAGGGCTGACGGGAA 250
.||.|||||.||||||||.||.||.||||||||||..||.|||||.||.|
RBAM_035190__ 201 GGCAGGCTTATGGTGGGGCGTATACACGATTTACGGCGGACTGACTGGCA 250
BSNT_05807___ 251 CTGTGTTTGCGACATATGGAGACACACTGCGGGGTTTGCAGGGAGCTCTT 300
|.|||||.|||||||..||.||.||.|||||||...|||||||.||.||.
RBAM_035190__ 251 CGGTGTTCGCGACATTCGGCGAGACGCTGCGGGCGCTGCAGGGGGCGCTG 300
BSNT_05807___ 301 CTTGTAAGCGCTGTATGTTTCTTTTTGTTAAGTGTTTTCAAGGTCATTGA 350
.|..||||||||||.|.||||||||||||.||..||||.||.||.|||||
RBAM_035190__ 301 TTATTAAGCGCTGTCTTTTTCTTTTTGTTCAGCCTTTTTAAAGTGATTGA 350
BSNT_05807___ 351 CAGACT-----TGCAAAATTGTTTACTCCGGTTGTAACGGGCGTCTATTT 395
..|.|| ||| |||||||.||||||||.||.||.||.|||.|
RBAM_035190__ 351 ACGGCTGGCCGTGC-----TGTTTACGCCGGTTGTGACCGGTGTGTATCT 395
BSNT_05807___ 396 ATTGCTTCTTGTCATGCAGCTGAGTCAGCCCATTATAAAAGGAATTCTCG 445
..||||..|.||||||||||||||||||||.|||.|.|||||..||.|.|
RBAM_035190__ 396 GCTGCTGTTGGTCATGCAGCTGAGTCAGCCGATTGTGAAAGGCCTTTTGG 445
BSNT_05807___ 446 GAATCGGTTATCGACAGGACGGGGTGGACGGTCTTGTATTTGGCCTGGCG 495
|.|||||.|||..|.|..||.|.||.|||||.||||||||.||.||.||.
RBAM_035190__ 446 GCATCGGCTATTTAAAAAACAGCGTCGACGGCCTTGTATTCGGGCTCGCC 495
BSNT_05807___ 496 CTTGTTGTGATCGCTGCCGCT-TTTATAATGACAAATTCGAACATCATGT 544
.|.||||||| ||..|.||.| ||.||.|||.|....|||| ||||
RBAM_035190__ 496 ATGGTTGTGA-CGGCGGCGATGTTCATCATGTCCCGATCGA-----ATGT 539
BSNT_05807___ 545 ----TTTTTAAG-CAATATTCTATTTT--ATTCGCCTTGTTCGGCGGGTG 587
||.||||| ||.|||.|.|||.| .|||| |||| .||||||.||
RBAM_035190__ 540 TACGTTCTTAAGACAGTATGCGATTCTCCTTTCG-CTTG-CCGGCGGATG 587
BSNT_05807___ 588 GGTGCTGTTTG-CGGCTGCCGGAGCGGCAAAGCCGATTGAAATGCCGGAC 636
|.|..|.||.| ||.|| .|||.||.||.||.||||||.||||.||||||
RBAM_035190__ 588 GATCTTATTCGCCGTCT-TCGGCGCTGCCAAACCGATTCAAATACCGGAC 636
BSNT_05807___ 637 CGGCTGTTTCAGCTGCCTTCCCTGTTTCCTTTTGGGACACCGTTATTTAA 686
||..||.||||||||||..|.||.|||||.|||||.|.|||..|.|||.|
RBAM_035190__ 637 CGCGTGATTCAGCTGCCGGCTCTTTTTCCGTTTGGAAAACCCGTGTTTGA 686
BSNT_05807___ 687 CAGCGGCCTGATCATCACTTCTATTTTTATTACCAT-CTTGCTGATTGTG 735
|||||||||||||||.||.||..||||.||||||.| ||| .|||||||.
RBAM_035190__ 687 CAGCGGCCTGATCATTACGTCACTTTTCATTACCGTGCTT-TTGATTGTC 735
BSNT_05807___ 736 AATATGCTGGCGAGCATGAAGGTTGTGGACATC-GCCGTGAAAAAATTCA 784
||||||||.||||||||...||||||.|| |.| ||.||||||||||||.
RBAM_035190__ 736 AATATGCTCGCGAGCATCCGGGTTGTAGA-AGCGGCGGTGAAAAAATTCG 784
BSNT_05807___ 785 GCAAACAGC-CTGATGGAAAGCATCATGAACGCCATGCCGGTTTTGCCGC 833
| |.|| |.|..||.||||..|.|||.||.|..||.||.|||||.||
RBAM_035190__ 785 G----CGGCACCGTCGGGAAGCGGCGTGAGCGTCCGGCTGGGTTTGCGGC 830
BSNT_05807___ 834 TTCATTCAGCCATCTGCTTAGCGGTTTGAC-GGGAGCTATTGCGCCTGTT 882
|||..|||||||.||..|.|||||..||.| |||.|| |||||||||||.
RBAM_035190__ 831 TTCGATCAGCCACCTTTTGAGCGGACTGTCAGGGGGC-ATTGCGCCTGTA 879
BSNT_05807___ 883 CCGATTTCGGGAGCCGCGGGTTTTATTGAAACGACCAAAATGCCTTCTAA 932
||||||||.||.||.||.|||||||||||.|||||.||..|.|||||.||
RBAM_035190__ 880 CCGATTTCAGGGGCGGCCGGTTTTATTGAGACGACAAAGCTTCCTTCGAA 929
BSNT_05807___ 933 AAAACCGTTTATGCTCGGCAGTAT-TTTGGTTATCGTGATCAGC-GTA-- 978
|||.||||||.|..|.||.|||.| |||| |||||||||.| |||
RBAM_035190__ 930 AAAGCCGTTTCTTTTGGGAAGTGTATTTG----TCGTGATCATCAGTATG 975
BSNT_05807___ 979 ATCCCGTTTTTTATGAATACGTTTGCGAGCCTGCCGTCACCCGTTGGATT 1028
||||||.|.|||||||||.||||||||||.|||||.|||||.||.||.||
RBAM_035190__ 976 ATCCCGCTATTTATGAATGCGTTTGCGAGTCTGCCCTCACCGGTCGGCTT 1025
BSNT_05807___ 1029 TGCGGTGAATTTTGTTGTGTTCTCCGCAATGGGCGGTCTGGCCTTTGCCG 1078
||||||.||.||.||.||.||||||.|.||||.||||||.||||||.|.|
RBAM_035190__ 1026 TGCGGTAAACTTCGTCGTTTTCTCCACGATGGCCGGTCTCGCCTTTACGG 1075
BSNT_05807___ 1079 AATTTGATTCATATGAGAAAGAAGAATCAAAAAGG-----GTGAGGTCTA 1123
|.|||||.||.|||||||.|| ||.|.||||||.| || ||.|
RBAM_035190__ 1076 AGTTTGACTCTTATGAGAGAG-AGGAGCAAAAACGAATCCGT----TCCA 1120
BSNT_05807___ 1124 TCATCGGCATCT--CACTGCTGACAGGGGTCGGTATCATGTTTGTTCCTG 1171
|.||||| ||| |.||.|||||.||.||||||.|.||||||||.||.|
RBAM_035190__ 1121 TTATCGG--TCTGGCGCTCCTGACGGGAGTCGGTGTGATGTTTGTGCCAG 1168
BSNT_05807___ 1172 AAACTGCGTTAAAGGGATTGCATCCGGTATTTATTTCTCTATTAAGCAAC 1221
|.|..||||||..||||.||||||||.||.|.|||||.||.|||||||||
RBAM_035190__ 1169 AGAGCGCGTTATCGGGAATGCATCCGATACTGATTTCGCTCTTAAGCAAC 1218
BSNT_05807___ 1222 GGGCTCGTATTAGGGACGCTTGCT-GCAATAGCTGCTGACCAGTTCCAGC 1270
||.||.||..|.||||||| |||| ||.|||||...|||||...||||||
RBAM_035190__ 1219 GGTCTTGTGCTCGGGACGC-TGCTGGCGATAGCGATTGACCGAATCCAGC 1267
BSNT_05807___ 1271 TT-TGGCGC---AGGAGAAAATCCGACAATCTCGTGTCAACGGAGAACAA 1316
|| | | |.||.||||||||||||||||||||||.||||...|..
RBAM_035190__ 1268 TTAT----CAAAAAGAAAAAATCCGACAATCTCGTGTCATCGGACGGCGG 1313
BSNT_05807___ 1317 ACATTGA 1323
||.||||
RBAM_035190__ 1314 ACGTTGA 1320
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