Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05800 and RBAM_035150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:18
# Commandline: needle
# -asequence dna-align/BSNT_05800___spsB.1.9828.seq
# -bsequence dna-align/RBAM_035150___spsB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05800___spsB-RBAM_035150___spsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05800___spsB-RBAM_035150___spsB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05800___spsB
# 2: RBAM_035150___spsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1501
# Identity: 1018/1501 (67.8%)
# Similarity: 1018/1501 (67.8%)
# Gaps: 152/1501 (10.1%)
# Score: 3310.0
#
#
#=======================================
BSNT_05800___ 1 TTGTCGGCCTATTTAAGC-AATTATTGGGTGCTGTACCGGAAGTACGTGG 49
||||||||.||.|| ||| |||||||||||||||||||||.||||..|.|
RBAM_035150__ 1 TTGTCGGCATACTT-AGCGAATTATTGGGTGCTGTACCGGCAGTATATTG 49
BSNT_05800___ 50 AGCTTTTTGACAAACTTCGCTACAAAGGGATTCCGCTTGGGCTTATCAGT 99
|.||||||.|...||||||||||||||..||.|||||.|...|.||||||
RBAM_035150__ 50 ACCTTTTTCAGTCACTTCGCTACAAAGACATCCCGCTCGCATTGATCAGT 99
BSNT_05800___ 100 AATTTTTATCAATACATCAGCCCTGAGCTGAGGGTGATGATGGAAGAAGA 149
||||||||||||||.|||||.||.|.|||..|||.||..|||| ||.|||
RBAM_035150__ 100 AATTTTTATCAATATATCAGTCCGGCGCTTCGGGAGAGCATGG-AGCAGA 148
BSNT_05800___ 150 A-CCGGAATTATTCGGATCGGTGGATCAGCATATCGATGAGGGACAG--A 196
| ||.||..|.|||||..|||..|||||||||||...|||.| |.| |
RBAM_035150__ 149 ACCCAGAGCTTTTCGGTCCGGCTGATCAGCATATTCCTGAAG--CCGGTA 196
BSNT_05800___ 197 TTCAGCCGTTTTTTGAAGAAAGAATTCAAAACATCGTTAAAACAAATGAC 246
|.|||||.|.||.|||..|||.||..||||||||....||||||.||||.
RBAM_035150__ 197 TACAGCCATATTATGATCAAAAAAGGCAAAACATTAAGAAAACAGATGAG 246
BSNT_05800___ 247 AAACCTGTTAAAGGGAAAGTCATTTTGCACTTTGATTACCTGCGTTTTTC 296
|||||.||.||.||.|||||||||.||||.||.|||.|.||.||.||..|
RBAM_035150__ 247 AAACCGGTAAACGGAAAAGTCATTCTGCATTTCGATCATCTTCGGTTCAC 296
BSNT_05800___ 297 AAACGGAAATTACTATCAATTTGATCCTGAAAAAACGGCTGTTTTGGCCA 346
..|.|||||.|||...||.||||||||.|.||||||.||.||..||||||
RBAM_035150__ 297 CGAGGGAAACTACCGGCAGTTTGATCCGGCAAAAACAGCGGTACTGGCCA 346
BSNT_05800___ 347 GATGGAGTTTGCCGCATTATTGTGATCTGCCTGTAATTAGCAAGCGGGA- 395
||||||||.||||..|..|||..|..|||||.||.||..||||...|||
RBAM_035150__ 347 GATGGAGTCTGCCTGACCATTACGGGCTGCCCGTTATCTGCAAATTGGAG 396
BSNT_05800___ 396 -------GATTGCGGATTCATGCCAAAAAGGCGATTCGAA------GCAG 432
||.||.||| ||||||| ||| .|..
RBAM_035150__ 397 CTGACGGGAATGGGGA--------AAAAAGG------GAACCCCGTCCCT 432
BSNT_05800___ 433 TATCTCGAAACAGCCTGTTC------------GCTTCTC-GCCCCTTATG 469
|||.|.||||.||||..||| |||||.| ||
RBAM_035150__ 433 TATATTGAAAAAGCCCATTCCATTCTGAAAGAGCTTCACAGC-------- 474
BSNT_05800___ 470 ATGATCACCCGGCATTTGGTGATCA-AGCGTTTCGCGACCGGCTTTTCAA 518
||.||.|| |||.|..|.|| ||..||||..||.||..|.|..||
RBAM_035150__ 475 -----CATCCCGC-TTTCGGAAACAGAGAATTTCAGGAACGTTTGTATAA 518
BSNT_05800___ 519 AGATATTCCTTTATTTATAGAGGCCATTGATACAGTTGATGCGCTGTTTG 568
|||.|||||.||||||||.||.||.|||||..|..|||||....|||||
RBAM_035150__ 519 AGACATTCCATTATTTATTGAAGCGATTGACGCCATTGATATTTTGTTT- 567
BSNT_05800___ 569 AACAG--GAAAAGATTTCAGCTGTTATTGTCGGAACGGCAGAAGACATTT 616
||.| |||||||||||.||.|||.|.|||||.|||.|.||.||.||||
RBAM_035150__ 568 -ACGGCCGAAAAGATTTCCGCCGTTGTAGTCGGCACGACGGAGGATATTT 616
BSNT_05800___ 617 ACAGCAGGGTGCTCGCTCTCATGT--GTCAAAGAAAAGGGGCCGTCAGCA 664
|||||.|.|||||.||.||.|||| |..|||.|||| .||||||||||
RBAM_035150__ 617 ACAGCCGTGTGCTGGCGCTGATGTCCGCGAAAAAAAA--CGCCGTCAGCA 664
BSNT_05800___ 665 TTTGTCTTCAGCATGGCGCATTGATGGGAGATGAAGCCTTCATTCCTGTT 714
|.|||||||||||.||.||..|.||||||||||||||.||..|.||.||.
RBAM_035150__ 665 TCTGTCTTCAGCACGGAGCGCTCATGGGAGATGAAGCGTTTCTGCCCGTG 714
BSNT_05800___ 715 TTTACAACCTATCAAGCTGTTTTTGGTGCGTATGAAGCAGAGTGGTTCAT 764
|||||...||||||.||.||.||.||.||.||||||||.|||||||..|.
RBAM_035150__ 715 TTTACGGACTATCAGGCCGTATTCGGGGCTTATGAAGCGGAGTGGTATAA 764
BSNT_05800___ 765 ACGAAAAGGCTGTAAACCCGAGCAGATTCTCGTAACGGGACATCCCCGCT 814
|..|||||||||.|.....||.||.||..||.|.|||||.||||||||.|
RBAM_035150__ 765 AGCAAAAGGCTGCAGGGATGAACAAATCATCATCACGGGGCATCCCCGTT 814
BSNT_05800___ 815 TCGATCAGATTT--TTAACAGAACGCCTATGGATATGTCCATATTCTATC 862
||||..|||||| |.||.||| |||.||.|||..|..||..||.||.|
RBAM_035150__ 815 TCGACGAGATTTTCTCAAGAGA--GCCGATAGATCAGGACACGTTTTACC 862
BSNT_05800___ 863 GAAAACTTGCTTTT---------CAGCCGACTAAAAAAATTGTGCTCATT 903
|.||||||.||||| ||||.||| .|||||.||.
RBAM_035150__ 863 GCAAACTTTCTTTTCTCCCGTCACAGCGGAC---------GGTGCTGATC 903
BSNT_05800___ 904 GCCACTCAGCCCTTTTCAGAAGACTTTTATTCCGGTGTGCTGCAGGGGCT 953
|||||.|||||.|||||.||.||.||||||.|.||.|||||..|.|.|||
RBAM_035150__ 904 GCCACGCAGCCGTTTTCTGATGAATTTTATACGGGCGTGCTTGAAGAGCT 953
BSNT_05800___ 954 TTCTGATCAGAAGCAGCTGCAGATCATTATCAAACCCCACCCGTGGGAAA 1003
|.|.|..||.|||.|..|||||.|||||||.|||||.||.||||||||||
RBAM_035150__ 954 TGCCGGCCAAAAGAACATGCAGCTCATTATTAAACCGCATCCGTGGGAAA 1003
BSNT_05800___ 1004 TCGGAAAAAACAAGCTTGAT-CTGT---ATCACGAGGCGGCGAAAAAACA 1049
||||.|||||||||||.||| || | |||| |..||.||| .|||.|
RBAM_035150__ 1004 TCGGCAAAAACAAGCTGGATGCT-TACAATCA-GCTGCTGCG--GAAATA 1049
BSNT_05800___ 1050 TAAAGCATGCAGAGTCATCAAAAAGGAGCTGGAGCTTTATGATTTGCTGC 1099
|||||||.|||.|.||||||||||.|||.|||||||.||||||.|.||.|
RBAM_035150__ 1050 TAAAGCAGGCAAAATCATCAAAAAAGAGATGGAGCTGTATGATATTCTCC 1099
BSNT_05800___ 1100 CGTATGCTGATGCCGCAGTGACGCAGACCTCGACAGTCGGTCTTGAAGCC 1149
||||||.|||.||.||||||||.|||||.||.||.||||||||||||||.
RBAM_035150__ 1100 CGTATGTTGACGCTGCAGTGACACAGACATCAACGGTCGGTCTTGAAGCG 1149
BSNT_05800___ 1150 ATGCTGTTTCAAAAGCCTGTGCTGATCGGAAAATCGTCCGGAAATCGCTC 1199
|||||||||||||||||.|||||||||||||||||..|.||||..|||..
RBAM_035150__ 1150 ATGCTGTTTCAAAAGCCCGTGCTGATCGGAAAATCAGCGGGAACCCGCAG 1199
BSNT_05800___ 1200 GTATCCGTATTATGAGTCTCTTGGCGATTTTATGTTTGACCAGCCGGATG 1249
.||.||.||||||.|.||.|||||.||.|||.|.|||||..|.|||.|.|
RBAM_035150__ 1200 ATACCCTTATTATCACTCACTTGGAGAATTTGTCTTTGAGGACCCGCAGG 1249
BSNT_05800___ 1250 AACTAGCGCACACCTTGG--TTGAA----GTTCTTCG-AAGTCCCGACGT 1292
.|||.||.|| || || || |.|.|.|| |||.||||..|.
RBAM_035150__ 1250 CACTCGCTCA------GGAATT-AATCCGGATATGCGAAAGCCCCGCAGA 1292
BSNT_05800___ 1293 GCATCAAAAAGCAGAAGAGGCGCGCCTGGCATTCATAGCGGCTAATTATC 1342
..||||||||||.|||.|||||||||..||.||..|.||.||.||.||.|
RBAM_035150__ 1293 ATATCAAAAAGCGGAACAGGCGCGCCGTGCTTTTGTCGCCGCGAACTACC 1342
BSNT_05800___ 1343 CGGTGGCAGAATCAACAAAT--------GCTTTAT---------TTGCGG 1375
|||| .|||.|| | ||||||| ||..||
RBAM_035150__ 1343 CGGT-TCAGGAT-------TCGCTTGCCGCTTTATGCCAAGTGCTTCAGG 1384
BSNT_05800___ 1376 AACTGAAAGCCAAAACAGGGGT-TGATTACAGGCGGGAAGATACTGAATA 1424
|| |||||.||.|| .|.|| .||.||||..||..||..|||
RBAM_035150__ 1385 AA---------AAAACCGGAGTCAGCTT-TAGACGGGTTGACCCTTCATA 1424
BSNT_05800___ 1425 A 1425
|
RBAM_035150__ 1425 A 1425
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