Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05798 and RBAM_035140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:18
# Commandline: needle
# -asequence dna-align/BSNT_05798___spsC.1.9828.seq
# -bsequence dna-align/RBAM_035140___spsC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05798___spsC-RBAM_035140___spsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05798___spsC-RBAM_035140___spsC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05798___spsC
# 2: RBAM_035140___spsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1195
# Identity: 918/1195 (76.8%)
# Similarity: 918/1195 (76.8%)
# Gaps: 50/1195 ( 4.2%)
# Score: 3457.5
#
#
#=======================================
BSNT_05798___ 1 ATGGTGCAAAAGAGAAATCA--TTTTCTCCCTTACTCATTGCCGTTAATC 48
|||||||||||.|| |||| ||||||.||.||.||||||||..|.|||
RBAM_035140__ 1 ATGGTGCAAAAAAG--ATCAGCTTTTCTTCCCTATTCATTGCCCATGATC 48
BSNT_05798___ 49 GGTAAGGAAGAAATTCAGGAGGTTACAGAAACGCTTGAATCGGGATGGCT 98
||.|||||.||||||||||||||||..||.||||||||||||||.|||||
RBAM_035140__ 49 GGGAAGGACGAAATTCAGGAGGTTATTGATACGCTTGAATCGGGCTGGCT 98
BSNT_05798___ 99 TTCTAAAGGCCCGAAGGTTCAGCAGTTTGAAAAAGAGTTTGCCGCGTTTG 148
|||.||.||.|||||.||..||..|||||||||||..|||||||| .|.|
RBAM_035140__ 99 TTCAAAGGGACCGAAAGTAGAGGCGTTTGAAAAAGCTTTTGCCGC-CTGG 147
BSNT_05798___ 149 TC-GGGGCGAAGCACGCCGTGGCGGTGAATTCATGTACCGCAGCTTTATT 197
.| |||||.||||||||..|.|||.||||.|||||||||||.|||||.||
RBAM_035140__ 148 ACGGGGGCAAAGCACGCGATCGCGCTGAACTCATGTACCGCCGCTTTGTT 197
BSNT_05798___ 198 TTTGGCTTTGAAAGCAAAAGGGATCGGGCCCGGGGACGAGGTCATTACCT 247
||||||..||||.||.|||||||||||.|||||.|||||||||||.||.|
RBAM_035140__ 198 TTTGGCCCTGAAGGCGAAAGGGATCGGTCCCGGCGACGAGGTCATCACGT 247
BSNT_05798___ 248 CT-CCGCTTACGTTCAGCTCGACCGCCAATACGATTATTCATACGGGAGC 296
|| ||| |.||||||||.||.||.||||||||.||..|.||.||.| ||
RBAM_035140__ 248 CTGCCG-TGACGTTCAGTTCAACAGCCAATACAATCGTGCACACAG--GC 294
BSNT_05798___ 297 GACG--CCTGTGTTTGCGGATATTGACCAAAAC----ACGCTCAATATTG 340
|.|| ||.|||||||..||.||.||.| | |||||.|||...|
RBAM_035140__ 295 GCCGTTCCGGTGTTTGTTGACATCGATC----CGCTTACGCTGAATGCAG 340
BSNT_05798___ 341 ACCCGGTAAAGCTTGAGGCGGCCGTCACACCGCGAACGAAAGCAGTTGTG 390
||||.|.|||..||||||||||||||||.|||||.||.|||||..||||.
RBAM_035140__ 341 ACCCTGAAAAAATTGAGGCGGCCGTCACCCCGCGGACAAAAGCGATTGTA 390
BSNT_05798___ 391 CCCGTCCACTTTGGCGGGCAGTCCTGCGATATGGATGCA-ATATTGGCTA 439
|||||.||.||.|.|||.|||||.||.||||||||| || ||..||||.|
RBAM_035140__ 391 CCCGTTCATTTCGCCGGCCAGTCGTGTGATATGGAT-CAGATTCTGGCCA 439
BSNT_05798___ 440 TTGCCCAAAATCATGGTTTATTCGTGCTGGAGGATGCGGCACATGCGGTA 489
|||||.||||.|||...|||||.||..|.||||||||.||||||||.||.
RBAM_035140__ 440 TTGCCGAAAAGCATCAGTTATTTGTCTTAGAGGATGCCGCACATGCCGTG 489
BSNT_05798___ 490 TATACGACTTATAAGCAAAGAATGATCGGTTCTATCGGAGATGCAACGGC 539
|||||.|||||.||.||.|.|||||||||.||.|||||.|||||.|||||
RBAM_035140__ 490 TATACCACTTACAAACAGAAAATGATCGGATCAATCGGCGATGCGACGGC 539
BSNT_05798___ 540 ATTCAGCTTTTACGCCACCAAAAACCTCGCGACAGGGGAAGGCGGCATGC 589
|||||||||.|||||.||.||||||||.||.||.||.|||||||||||||
RBAM_035140__ 540 ATTCAGCTTCTACGCGACAAAAAACCTGGCAACCGGTGAAGGCGGCATGC 589
BSNT_05798___ 590 TGACGACTGATGATGAGGAGCTTGCCGATAAGATCCGGGTGCTAAGCCTT 639
|||||||.||.|||||.|.||||||||||.|||||.|||||||.||||||
RBAM_035140__ 590 TGACGACGGACGATGACGGGCTTGCCGATCAGATCAGGGTGCTCAGCCTT 639
BSNT_05798___ 640 CACGGCATGAGTAAAGCCGCATGGAACCGTTATTCTTCAAATGGCAGCTG 689
|||||||||||.||||.|||.||||||||.|||||||||||.||.|||||
RBAM_035140__ 640 CACGGCATGAGCAAAGGCGCGTGGAACCGCTATTCTTCAAACGGAAGCTG 689
BSNT_05798___ 690 GTACTATGAAGTCGAATCGCCCGGCTATAAGATGAATATGTTTGATTTGC 739
||||||.||.||||||.|||||||||||||.|||||||||||||||.|.|
RBAM_035140__ 690 GTACTACGAGGTCGAAACGCCCGGCTATAAAATGAATATGTTTGATCTTC 739
BSNT_05798___ 740 AGGCGGCCCTCGGACTTCATCAGCTAAAACGGCTGGATGATATGCAGAAA 789
||||.||.||.||.|||||||||||.||||||.|.||....||||||.||
RBAM_035140__ 740 AGGCAGCGCTTGGGCTTCATCAGCTGAAACGGATTGACAGCATGCAGCAA 789
BSNT_05798___ 790 CGGAGAGAAGAGATTGCCGGCCGCTATCAAACCGCTTTTCAG-CAGATTC 838
.|.||||..||.|||||..|||||||.||...||| .||||| ||.||..
RBAM_035140__ 790 AGAAGAGCCGACATTGCGAGCCGCTACCAGGACGC-CTTCAGACACATGA 838
BSNT_05798___ 839 CGGGACTGATCACGCCGTTTGTCCATGATGACGGCAGGCACGCCTGGCAT 888
..||.||||.||..|||..||||..|||||||||..||||.||.||||||
RBAM_035140__ 839 AAGGGCTGACCATCCCGCATGTCAGTGATGACGGGCGGCATGCATGGCAT 888
BSNT_05798___ 889 CTATATGTTCTGCAAGTTGATGAAAAAAAGGCCGGGGTTACGCGCAGCGA 938
||.||||||||.|||.|.||.||..|..||||||||||.|..||.|.|||
RBAM_035140__ 889 CTGTATGTTCTTCAAATAGAGGAGCAGGAGGCCGGGGTCAGCCGGAACGA 938
BSNT_05798___ 939 AATGATTACGGCTTTAAAGGATAAATACAATATCGGCACTAGCGTTCATT 988
..|||||.|.||||||||.||..||||.|||||||||||.||.|||||||
RBAM_035140__ 939 TCTGATTTCCGCTTTAAAAGACCAATATAATATCGGCACAAGTGTTCATT 988
BSNT_05798___ 989 TTATTCCAGTACACATT-CATCCGTATTATCAAAAGCAA--TTTGGATAT 1035
|||||||.||.| |.|| ||||||||||||||||| || |..||.|||
RBAM_035140__ 989 TTATTCCGGTTC-CGTTCCATCCGTATTATCAAAA--AACGTACGGGTAT 1035
BSNT_05798___ 1036 AAGGAAGCGGACTTTCCGAATGCC----------ATGAATTACTATAAAC 1075
||||||.|.||||||||| ||| || |||.|.|
RBAM_035140__ 1036 AAGGAAACTGACTTTCCG---GCCGCGGCCGCGTAT-------TATCACC 1075
BSNT_05798___ 1076 GAACCCTTTCTCTCCCGCTCTATCCATCAATGTCTGACGACGATGTAGAT 1125
|.|||.|.||.|||||.||.|||||.||||||.|.||.|||||.||.||.
RBAM_035140__ 1076 GCACCGTGTCACTCCCTCTTTATCCGTCAATGACAGATGACGACGTTGAA 1125
BSNT_05798___ 1126 GATGTCATTGAAGCTGTGCGGGATATCGTAAAAGGGGCTGATTAA 1170
.|.|||||||.|||.||...|||||||||.||||||||||||||.
RBAM_035140__ 1126 TACGTCATTGCAGCCGTTACGGATATCGTCAAAGGGGCTGATTAG 1170
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