Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05796 and RBAM_035130

See Amino acid alignment / Visit BSNT_05796 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:18
# Commandline: needle
#    -asequence dna-align/BSNT_05796___spsD.1.9828.seq
#    -bsequence dna-align/RBAM_035130___spsD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05796___spsD-RBAM_035130___spsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05796___spsD-RBAM_035130___spsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05796___spsD
# 2: RBAM_035130___spsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity:     601/929 (64.7%)
# Similarity:   601/929 (64.7%)
# Gaps:         124/929 (13.3%)
# Score: 1813.5
# 
#
#=======================================

BSNT_05796___      1 GTGTATACGGTAAAAGAAAATGTCTCCAAAGAGTTGATTGAGGAATTTCT     50
                     |||||.|...|.|..||||||.|..|..|.||..|||||.|....||.||
RBAM_035130__      1 GTGTACAGACTGAGGGAAAATCTTGCGCAGGACATGATTCATACCTTCCT     50

BSNT_05796___     51 CCA----AAGCCGACAGCTTACA-CTGGATGTTCCGTATCAATTTTCCCT     95
                     .||    |||     .||.|.|| |.|||.|   |.|||.|||..||.||
RBAM_035130__     51 GCATCAGAAG-----GGCATCCAGCCGGAAG---CCTATGAATCGTCGCT     92

BSNT_05796___     96 CGGCCTTTTT-----GAAAACAGCAGGCTCCAAGGCGT-ATTGCTT-TAC    138
                     |.|  |||.|     |||||||||   ||.|||||||| |||  || ||.
RBAM_035130__     93 CTG--TTTATTGGAAGAAAACAGC---CTTCAAGGCGTGATT--TTATAT    135

BSNT_05796___    139 GAAGATTCTTTGTGGGAAAG-CAAGGTGCTTCAGAAGAAA-GTCATGAAC    186
                     |||.|.||||.||||||||| |||  |..|||.|||.||| .||||.||.
RBAM_035130__    136 GAAAACTCTTCGTGGGAAAGTCAA--TTGTTCCGAAAAAATATCATCAAT    183

BSNT_05796___    187 GTCAAACTTCTTGCGGCAAATAGTACCGGGCAGCTAAAGAGGCTGTTTGA    236
                     ||.||.|||...||.|||||.||..||||.|||||.||.|||||||||.|
RBAM_035130__    184 GTGAAGCTTGCAGCCGCAAACAGCGCCGGACAGCTCAAAAGGCTGTTTCA    233

BSNT_05796___    237 AGCTTTTTATACTGTA-------CGCCAAATGGATGAAACGGATTTTATC    279
                     .|..|||||..|.|.|       ||.||       |..||.||||||||.
RBAM_035130__    234 GGAATTTTACGCGGCAAGGCGGGCGGCA-------GGCACTGATTTTATA    276

BSNT_05796___    280 TTTGT-------CCGTGTTCCCGCTGAAGATATCGGAGCCGCGCATGTGA    322
                     |||.|       |||       ||||||||||||||.||...|||.||..
RBAM_035130__    277 TTTATTAAAATACCG-------GCTGAAGATATCGGCGCGATGCAGGTCG    319

BSNT_05796___    323 TACAGCAGCAGCCATCCTCTTACTTTGTCGGGAGTTTGCTGAAGCTGGCG    372
                     |.|||||||..||...|.||||.|||||.||||||.||||.|||||    
RBAM_035130__    320 TTCAGCAGCTTCCGAACGCTTATTTTGTAGGGAGTCTGCTCAAGCT----    365

BSNT_05796___    373 ATGCCTCCGTC-------TTTTTATGACAAAACACCGCCATTT----TT-    410
                        |.||.|||       |.|.|||.|||..||.|||||.|||    || 
RBAM_035130__    366 ---CGTCAGTCCTGTGCGTGTATATAACAGCACGCCGCCGTTTGAGATTA    412

BSNT_05796___    411 -TGAACTGGGCCCGCCTGAGCCCGGAGACACAGAAGCGATATGTGAGCTG    459
                      .|||        |||.|| |||||.|||||.||||||||..|...||||
RBAM_035130__    413 CGGAA--------GCCGGA-CCCGGCGACACGGAAGCGATCAGCCGGCTG    453

BSNT_05796___    460 GCCCGAGACTCGTTTACAAAAAGCAGATATTTTCAGGATCCTCATCTCAG    509
                     |||||.|||.|.||||||||||||||.||||.|||.||.||.||||||| 
RBAM_035130__    454 GCCCGCGACGCCTTTACAAAAAGCAGGTATTATCAAGACCCCCATCTCA-    502

BSNT_05796___    510 CCGCGATGCA---GCAAACAAAATATTTCAGGAGTGGACACGAAACAA-T    555
                       ||.|||.|   ||||||....|.|||.|.||||||.|.||.||.|| .
RBAM_035130__    503 --GCTATGAAAGTGCAAACCTCCTGTTTGAAGAGTGGGCGCGGAATAACG    550

BSNT_05796___    556 CTGAATGGAAGGGCGGCGGT-CAATATTGTCGCTAAACACAATGGCGAGG    604
                     |.||| ||.||.||..||.| |||| |.|.|||.|.|.|.||.||.|||.
RBAM_035130__    551 CGGAA-GGCAGAGCTTCGTTACAAT-TCGCCGCCACATATAAGGGAGAGA    598

BSNT_05796___    605 TCATCGGCTATCTTCAGGGCTTATCAAGAGATGATGAATGCATTCTCGAT    654
                     ...|.||||.|.|||||||..|.||.|.||..|||||||.|.|.||.|||
RBAM_035130__    599 CTGTGGGCTTTGTTCAGGGGCTGTCTAAAGGCGATGAATTCGTCCTTGAT    648

BSNT_05796___    655 TTGATGGCTGTAAAGCCGGGATTTGAAGGAAAACGTATTGCG---TTTCA    701
                     .|||||||.|||||||||||||||||||||||..|   .|||   ||.||
RBAM_035130__    649 CTGATGGCGGTAAAGCCGGGATTTGAAGGAAAGGG---AGCGGGATTCCA    695

BSNT_05796___    702 TTTATTGGCGAATCTCATAGAACAACCGGAGACCCAGA----------AG    741
                     ||||..||||.|..|.||.||||||.|          |          ||
RBAM_035130__    696 TTTAGCGGCGCACGTGATTGAACAATC----------ATTGCGCTTTCAG    735

BSNT_05796___    742 CATAGAACGGTAACAGCGGGGACGCAGCTCCACAATGTAAGGGCGATCCG    791
                     ||||..||.|||.|||||||.||||||||||||||||||||.||.|||||
RBAM_035130__    736 CATAAGACTGTATCAGCGGGAACGCAGCTCCACAATGTAAGAGCCATCCG    785

BSNT_05796___    792 CCTTTATGAACGAATGGGCTTCACCGCTGAACAATCGTATTACTATTATC    841
                     |||.||.|||.|||||||.||.|..||.||....||.||||||||.||||
RBAM_035130__    786 CCTGTACGAAAGAATGGGATTTAAAGCGGATGCGTCCTATTACTACTATC    835

BSNT_05796___    842 ATATTTGGCCGGGCAAGGAGGCGAAATAA    870
                     ||.|.|||||.||.|||||||||.|.|.|
RBAM_035130__    836 ATGTGTGGCCCGGGAAGGAGGCGGACTGA    864


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