Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05793 and RBAM_035110

See Amino acid alignment / Visit BSNT_05793 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:18
# Commandline: needle
#    -asequence dna-align/BSNT_05793___spsF.1.9828.seq
#    -bsequence dna-align/RBAM_035110___spsF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05793___spsF-RBAM_035110___spsF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05793___spsF-RBAM_035110___spsF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05793___spsF
# 2: RBAM_035110___spsF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 804
# Identity:     503/804 (62.6%)
# Similarity:   503/804 (62.6%)
# Gaps:         141/804 (17.5%)
# Score: 1435.5
# 
#
#=======================================

BSNT_05793___      1 ---ATGAATGATATTCTCTTTATCATTCAAGCAAGAATGGGTTCAACAA-     46
                        ||||.|||.|||.|.|||||||||||.||..|.|||||      || 
RBAM_035110__      1 ATGATGACTGACATTTTGTTTATCATTCAGGCGCGGATGGG------AAG     44

BSNT_05793___     47 -----GGCTTCCGGGAAAAGTGCTTCGGCCGCTCGG-----AT-CGAATC     85
                          |.|||||.||.||||||||....|||.||||     || |||   
RBAM_035110__     45 CGGGCGTCTTCCCGGTAAAGTGCTGAAACCGATCGGCGGGTATACGA---     91

BSNT_05793___     86 GTTTACTTGATATTCTCGTTCACCGTGTCCGGCAAAGCGCGTTTTACCAA    135
                        |.||.|||||..|.||..|..|.||.|||||||||||||.||     
RBAM_035110__     92 ---TCCTCGATATGATTGTCAAAAGGGTTCGGCAAAGCGCGTATT-----    133

BSNT_05793___    136 AAGGAT------CGGGATAATCTTGTCATCGCCACGTCTGACA--AAGAA    177
                      |.|||      |||||||||||..||.|||||.|||||||||  |||  
RBAM_035110__    134 -ATGATCAATCGCGGGATAATCTGATCGTCGCCTCGTCTGACAGCAAG--    180

BSNT_05793___    178 ACTGACGACATATTAGAGGCGCACTGTATCA--AACAAGGCTTTCGTGTT    225
                     ||.||||||||..|....||||||||.||||  ||.||  ||..|||||.
RBAM_035110__    181 ACCGACGACATTCTGTCTGCGCACTGCATCAGCAAGAA--CTACCGTGTG    228

BSNT_05793___    226 TTCCGCGGGAGCGAAGAACGTGTCCTCGATAGGTTTGTGAAGGTCATAGA    275
                     ..||||||.|||||..|..||||.||.||..||||||...|.|||||.||
RBAM_035110__    229 CACCGCGGCAGCGAGCAGTGTGTGCTTGACCGGTTTGCACAAGTCATCGA    278

BSNT_05793___    276 AGCTGTTAAACCGTCAGTCATC---ATCCGGTTAACGGGTGATAATCCGT    322
                     |...||.||||||   |.||||   .||.|..|.|||||.|||||.||||
RBAM_035110__    279 ACAAGTAAAACCG---GACATCGCAGTCAGACTGACGGGGGATAACCCGT    325

BSNT_05793___    323 TTGTCGATCCGGAGCTGCTCGATGTAATGATTAAGGCGCATTTTGATCA-    371
                     ||||||||||...||||||.|||.|..|||||.|..|||||||.||||| 
RBAM_035110__    326 TTGTCGATCCTTCGCTGCTTGATTTTCTGATTCAATCGCATTTAGATCAG    375

BSNT_05793___    372 -AGGATCGGATTATACGTATATC--CTGAATGCCCCATTAGGGATTTGCG    418
                      |.|  |.||.||.|||||||||  |.|  |.|.||..|.||.||..|||
RBAM_035110__    376 CACG--CAGACTACACGTATATCTGCGG--TACACCGCTCGGCATCGGCG    421

BSNT_05793___    419 GCGAAGTGGTCAACGC-CAACCTGTTAATTGACATCA--GCCGTATTCAG    465
                     ||||.|.|||.||||| |.| ||.||||..||.||||  ||||   .||.
RBAM_035110__    422 GCGAGGCGGTAAACGCGCGA-CTTTTAACGGAGATCAATGCCG---ACAA    467

BSNT_05793___    466 AAT-ATGGAGGATCAATATCAGGAGCATGTCACG-TTATATATAAG-GAA    512
                     ||| .|||.|||..||||.||||||||||||||| ||.|| ||||| |||
RBAM_035110__    468 AATGCTGGCGGACAAATACCAGGAGCATGTCACGCTTTTA-ATAAGAGAA    516

BSNT_05793___    513 TCATCC-----AGCTCTTTATCGTGTTCAGTTTTTAGAG---GCGCCGGA    554
                     || |||     ||     ||.||..|||..|||...|||   .|||.|||
RBAM_035110__    517 TC-TCCTGAGAAG-----TACCGGCTTCTCTTTCCTGAGCCCCCGCAGGA    560

BSNT_05793___    555 ACGATTTCGCGCCCCTCAATATCGGCTGACCATTGATACAAAGGAAGACT    604
                     ||   |.||.||.|||||.|..|||.|||||.|.||||||.|.||.||||
RBAM_035110__    561 AC---TCCGGGCTCCTCACTTGCGGATGACCGTCGATACAGAAGAGGACT    607

BSNT_05793___    605 A-----TGAATCGATAAAGGCC------CTCTATCAAAAAGCAGGCGAGC    643
                     |     |           ||||      ||.||...||||||.|||..||
RBAM_035110__    608 ACAGGCT-----------GGCCCGCGAGCTGTACGTAAAAGCGGGCTCGC    646

BSNT_05793___    644 GCCCCGATGTATCC-GCCTCAGAGCTTATCACCCTTCTGAA-------CC    685
                     |.||.|||.| ||| ||...|||..|.|||...||.|||||       ||
RBAM_035110__    647 GTCCTGATAT-TCCGGCAAAAGAATTGATCCATCTGCTGAATAGTGATCC    695

BSNT_05793___    686 GGAACCC----------------CGATGCGGCAACCGAACGAGAGGCTGA    719
                     |||.|.|                .|||.||||||   ||  |||||||||
RBAM_035110__    696 GGAGCTCAGGGCCATTAATCAAATGATCCGGCAA---AA--AGAGGCTGA    740

BSNT_05793___    720 CTAG    723
                     .|||
RBAM_035110__    741 TTAG    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05793 and RBAM_035110

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
