Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05792 and RBAM_035100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:18
# Commandline: needle
# -asequence dna-align/BSNT_05792___spsG.1.9828.seq
# -bsequence dna-align/RBAM_035100___spsG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05792___spsG-RBAM_035100___spsG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05792___spsG-RBAM_035100___spsG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05792___spsG
# 2: RBAM_035100___spsG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity: 674/1116 (60.4%)
# Similarity: 674/1116 (60.4%)
# Gaps: 207/1116 (18.5%)
# Score: 1810.5
#
#
#=======================================
BSNT_05792___ 1 ATGCGTGTTGGGATCTTCGCAGACGGCGGCTATGAAAAGGGAATGGGCCA 50
|||||..||..|||.|||||.|||||.|||..|||.|..||.|||||.||
RBAM_035100__ 1 ATGCGGATTTTGATTTTCGCGGACGGGGGCCGTGACATCGGCATGGGGCA 50
BSNT_05792___ 51 TGTTGTCCGGATGAAGAGACTTGCGGAGGGGCTCA--AACAGCGA-TGCT 97
.|..||||||||||||...||||| .||.|| || ||.|.|.| ||||
RBAM_035100__ 51 CGCGGTCCGGATGAAGCTGCTTGC--CGGTGC-CATTAAGAACAATTGCT 97
BSNT_05792___ 98 TGATTACGTTTTATACGAATCAGGAG-----------TCTGAAGCGTTTC 136
..||.|||||.||.||.|||.|.||| |||| ||
RBAM_035100__ 98 CAATAACGTTCTACACAAATAAAGAGGCTTCTTCTTATCTG-------TC 140
BSNT_05792___ 137 TTCATGAAGAGCATTGGCGTGTCATCGTAAAGCCGGAGCTGCAGCAGCAC 186
||| .||.||.|||...||.|||.|.|||||.||...|.|.|||.|.
RBAM_035100__ 141 TTC----TGATCAATGGGAAGTGATCATCAAGCCTGACAAGGAACAGAAG 186
BSNT_05792___ 187 GAATTTATTCTCCGGGAAATAAAAAGCAAGAAGCT--TGATTTGCTTTTG 234
.||||||||.|||||||||||||.||..|| ||| |||..|.||..|.
RBAM_035100__ 187 AAATTTATTGTCCGGGAAATAAACAGGCAG--GCTCCTGACCTTCTCATA 234
BSNT_05792___ 235 TTTGATATTCTAG-------GCGCGCCTGCAGAGCTGTTAAAGAAAATAA 277
||.|||.|.||.| |.|.|.||| ||||.||.||.|.|
RBAM_035100__ 235 TTCGATCTGCTCGATATGCCGTGTGACTG-------GTTAGAGGAAGTCA 277
BSNT_05792___ 278 AGACGGAGACA----GATGCGAAAATTGTTCTT-TTTGAAGAGAAAAACG 322
|.|.|.|..|| .|.|| ||.| |||| ||||| |||||||||
RBAM_035100__ 278 AAAAGCATTCATCGGCACGC----ATCG-TCTTATTTGA--AGAAAAACG 320
BSNT_05792___ 323 GTAAATCA----ATTCAATATA-GTGACGCAGTCATTAACGGAATTTACG 367
|.|| || |||| ||.|| |.||.||.||.||.|||||.|||||||
RBAM_035100__ 321 GGAA--CATGTCATTC-ATTTATGCGATGCCGTTATAAACGGCATTTACG 367
BSNT_05792___ 368 GTGACATCAGAAGCAGGGTGTAC-GTTCA---GGGAAACACACGC-ATTT 412
|.|...|.|.||||.|| || ||||| |||.|.|.| ||| .|.|
RBAM_035100__ 368 GAGGGCTGAAAAGCCGG----ACGGTTCAAATGGGCAGCGC-CGCGGTAT 412
BSNT_05792___ 413 ATGAAGGTCCGGACTATCTTATTCTTCACCCCGCCTTTCAGGCCGCAAGA 462
|||||||.|||||.|||.|.||||||||.||.|..|||.|....||.|.|
RBAM_035100__ 413 ATGAAGGCCCGGAATATATGATTCTTCATCCGGGTTTTGAAAAAGCCAAA 462
BSNT_05792___ 463 GAGGATTA-CACACTTAAGAAAGACTGCCG--CAATATCCTTGTTGCATT 509
.||..||| || .||.|..|||||.||||| |.|||| |.|||.||||
RBAM_035100__ 463 CAGCTTTATCA-GCTGAGAAAAGAATGCCGGACCATAT--TGGTTTCATT 509
BSNT_05792___ 510 AGGAGGAAGTGATCCGAAGCAGCTTATTTTTAAAGTGCTGG----CTGCC 555
|||||||||.||.||||||.|||||.|.|||||||||.||| .||||
RBAM_035100__ 510 AGGAGGAAGCGACCCGAAGAAGCTTGTCTTTAAAGTGATGGAAGCATGCC 559
BSNT_05792___ 556 GCTGATCAAGTCCCCGACATAAAAGACAAAAAC--ATGATGTTTGTAATG 603
||.| || ||||||||||..| .|.||||| .||||..|.||.|||
RBAM_035100__ 560 GCCG--CA--TCCCCGACATTCA--TCGAAAACGAGTGATCATCGTCATG 603
BSNT_05792___ 604 GGGAGCGCTTCACCGCATCAAGAGGCAGTCCGAAGGCGGATCGAAAAGAA 653
||..||||..|.||.|||...||.|..||.|| .|||.|||..|.|.||
RBAM_035100__ 604 GGCGGCGCCGCGCCTCATGCTGATGACGTGCG--CGCGCATCTTACACAA 651
BSNT_05792___ 654 ---------GCCGCAGTACAAGATGATCGAA--CAGACAAATGATATGGC 692
|||| |||||.| || |||||||||||.|||||
RBAM_035100__ 652 ATGCCTTATGCCG-------AGATGGT--AAGGCAGACAAATGACATGGC 692
BSNT_05792___ 693 -------------AGGTTTGATGAAACAAGCGGACGCAGCCATTGTCGCC 729
|||..|||| |.| |||.|.||..||
RBAM_035100__ 693 CGCGCTTCTTTCGAGGGCTGAT-----------ATG--GCCGTCGTGTCC 729
BSNT_05792___ 730 GGCGGCATCTCTCTATATGAAGCCATTTGCATCGGCGTGCCGTGCCTTGT 779
|||||.|||.||.||||||||.|||||||.|..||.|||||.|||.|.||
RBAM_035100__ 730 GGCGGGATCACTTTATATGAAACCATTTGTACAGGTGTGCCCTGCATCGT 779
BSNT_05792___ 780 TCTTTCTCAGGTTGAGCATCAAACGGCAACAGCAAAAACATTTGCTGGCC 829
.||||||||.||.|||||||||||.|..||.||...||.|||.||.|..|
RBAM_035100__ 780 ACTTTCTCAAGTGGAGCATCAAACTGAGACGGCGGGAAAATTCGCCGCAC 829
BSNT_05792___ 830 AAGGCGCCGCTCTTGATCTTGGTTTGGGTGAGCTTGTACCGGATGAAACA 879
..||.|||||..||.|.||.||..|.||||| |
RBAM_035100__ 830 GGGGGGCCGCCGTTCACCTCGGCCTTGGTGA------------------A 861
BSNT_05792___ 880 CTCATCTATCA---GATGT-----CAC-GCAT---TATGA----GCAGC- 912
..|| ||||| ||.|| ||| |||| |.||| ||.||
RBAM_035100__ 862 GGCA--TATCAGCGGACGTTCTCGCACGGCATATGTCTGACATGGCCGCT 909
BSNT_05792___ 913 ---TATCCTCTTCG--CC---TTTCTTTGCACAAGGGAGGAAGGCCGCTC 954
|||||.||.|| || .|||.| ||.|| .||||.||||||.
RBAM_035100__ 910 GATTATCCGCTGCGGACCGGACTTCAT--CAAAA---CGGAAAGCCGCTG 954
BSNT_05792___ 955 GTGGATGGCAAAGGCATTATACGGGTAACAGCTATTCTTCAAGATTTATA 1004
||.||.||||..|||||.|.|||||...|.||.||||||.|.|||| |.
RBAM_035100__ 955 GTTGACGGCAGGGGCATCAAACGGGCGGCGGCGATTCTTTATGATT--TG 1002
BSNT_05792___ 1005 TGAACAAGAGATATAA 1020
|||
RBAM_035100__ 1003 TGA------------- 1005
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