Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00457 and RBAM_035040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_00457.1.9828.seq
# -bsequence dna-align/RBAM_035040.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00457-RBAM_035040.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00457-RBAM_035040.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00457
# 2: RBAM_035040
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 850
# Identity: 396/850 (46.6%)
# Similarity: 396/850 (46.6%)
# Gaps: 305/850 (35.9%)
# Score: 709.0
#
#
#=======================================
BSNT_00457 1 ----------TTGATGAATTTGATCAGAATCGAATTAAGAAAA------- 33
|| ||||| ||.|||.|..|| ||||
RBAM_035040 1 ATGTTAAAACTT-ATGAA----ATTAGAGTACAA-----AAAACATCACT 40
BSNT_00457 34 -ATGA---------AAATGGGCTGG---------TAT--ATCAGAGGTGC 62
||.| ||||||| ||| ||| ||||
RBAM_035040 41 TATCACAGTATTTTAAATGGG-TGGCACTTTGGATATTCATCA------- 82
BSNT_00457 63 CCTCATTGCCAACGTGATCATTA-TGGGTTTTATGTGGCTG---ATC-AG 107
||.||||| ||| .||.||||||| ||.|| ||| |.
RBAM_035040 83 --TCTTTGCC----------TTAGCGGCTTTTATG-GGATGGGAATCTAA 119
BSNT_00457 108 TTATTCCGAAAA--AGCCGATGGCGGGGTTTCGTTCCAAAGTACGGATGA 155
..|| ||||| |.|..|| ||||||| |||.|
RBAM_035040 120 AAAT---GAAAATGAACTTAT------GTTTCGT-----------GATTA 149
BSNT_00457 156 AGC--ATTCCTCATCATCGGCACC-------TTCGTCAGAGCGGTATTTA 196
.|| ||| |.|| |||...|.| ||..|.|||...||.||||
RBAM_035040 150 TGCAGATT--TTAT-ATCTCTAACTAATATTTTAATTAGAATTGTGTTTA 196
BSNT_00457 197 TCGTA--TTTGGCGCTGTGCTGAT----CGTAAAATTGGTGATTTCGGAA 240
| || |||...||||||.|..| ||| ||.||.|||...|||
RBAM_035040 197 T--TAGTTTTTCTGCTGTGATTTTATCCCGT----TTAGTTATTGATGAA 240
BSNT_00457 241 TATAAAAACAAAACCATTCTTGTGATGTTCACGTACCC--------GATC 282
||||||||.|||||.||.|...||.||||.||.||.|| ||
RBAM_035040 241 TATAAAAATAAAACAATACAATTGCTGTTTACTTATCCTTTACAAAGA-- 288
BSNT_00457 283 AGCCGTAAAAAGCTGCTCACCGCTAAGCTCATGATCGCGGGCGGACTGAC 332
||||| .|.|..|| |||||.| |||..|
RBAM_035040 289 ------AAAAA----ATTAATGC-AAGCTAA-------------ACTATC 314
BSNT_00457 333 GTTTATC--ACGATTTTACTTT-CAAATATACTCATAGCCGCCGGTTTCT 379
..||.|| .|.|||.|.|||| .||.|||..|.||.||..| ||||.|
RBAM_035040 315 TATTGTCTTCCTATTCTGCTTTGTAAGTATTGTTATTGCTAC--GTTTGT 362
BSNT_00457 380 T-TTGGCTGAACTCGATCTGCCATTTCATAC----CGGGAGAGCTTACT- 423
| || ||||.| ||.||.| ||.|||..|..|||
RBAM_035040 363 TATT-----AACTTG---------TTAATTCTCTTCGTGAGTCCGCACTT 398
BSNT_00457 424 -------TCCGAGATCATTTCTCAACAGGCGGTCAAAATG------GCGG 460
|.||||| ||.|.||..||||| |...
RBAM_035040 399 ATATTTATTCGAGA------------AGCCTGTTGAAATGAGTGAAGTTA 436
BSNT_00457 461 TTTTCG------------CTTTTGGCGCCGCT------------GGAACC 486
|||.|| ||.||..|.||||| |||...
RBAM_035040 437 TTTCCGCTATGCCATCGACTCTTCTCACCGCTTTTATGATGGGAGGAGTG 486
BSNT_00457 487 AGTTTAGTTCCCATCTTTTTTGGGATGCGTAGACACTCGGTTCCGGCGAC 536
|||.|..||||..|.|||||.||.|||.|.|.|.|.||...|.|.||.||
RBAM_035040 487 AGTCTGATTCCTTTATTTTTCGGCATGAGAAAAAAATCAACTTCTGCTAC 536
BSNT_00457 537 CATCATTTCATCTGTAGTAATTGTGATGCTCATCAGCTCAACA------- 579
.||||.||...||||..||||.|.|.|..|.||||...|||||
RBAM_035040 537 AATCACTTGGGCTGTCATAATCGGGGTCTTTATCAATGCAACAGTTTCCG 586
BSNT_00457 580 -------------AGTCCGGGCTT---CTCGATT-----TCAT------- 601
||||.| || .||.||| ||||
RBAM_035040 587 ACGGAGGAGAAACAGTCAG---TTTAAGTCAATTTATTATCATTCCAATT 633
BSNT_00457 602 ---CTGTTGTGTATATCCCGTTATCGTTAGCGGCATTCGGATTGTTCT-T 647
|| ||||.|||.| .|||.| ||||.|| |||.| |
RBAM_035040 634 ATACT-TTGTTTATTT--GGTTTT--TTAGTGG----------GTTATCT 668
BSNT_00457 648 TTCCTAC----ATGGCGATCAGGAATGCGGA---AAAGCAGGATGCGTAA 690
|||.||| |.|..||||||.|| || |..|.||
RBAM_035040 669 TTCTTACCGTAAGGTGGATCAGAAA----GATTTATTGTAG--------- 705
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