Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05783 and RBAM_034990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:17
# Commandline: needle
# -asequence dna-align/BSNT_05783___rocG.1.9828.seq
# -bsequence dna-align/RBAM_034990___rocG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05783___rocG-RBAM_034990___rocG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05783___rocG-RBAM_034990___rocG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05783___rocG
# 2: RBAM_034990___rocG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1303
# Identity: 1031/1303 (79.1%)
# Similarity: 1031/1303 (79.1%)
# Gaps: 44/1303 ( 3.4%)
# Score: 4116.5
#
#
#=======================================
BSNT_05783___ 1 ATGTCAGC--------------AAAGCAAGTCTC-GAAAGATGAAGAAAA 35
|||||||| ||||||| || |||||||||||||||
RBAM_034990__ 1 ATGTCAGCCAACCCGCTTTCTAAAAGCAA---TCAGAAAGATGAAGAAAA 47
BSNT_05783___ 36 AGAAGCTCTTAACTTATTTCTGTCTACCCAAACAATCATTAAGGAAGCCC 85
|||||.||||||.||.||..||||.||.|||.|.|||||.||.||.||||
RBAM_034990__ 48 AGAAGTTCTTAATTTGTTCTTGTCAACACAATCGATCATAAAAGAGGCCC 97
BSNT_05783___ 86 TTCGGAAGCTGGGTTATCCGGGAGATATGTATGAACTCATGAAAGAGCCG 135
|.||.||.|||||.||.||.|...|||||||||||.|.||||||||||||
RBAM_034990__ 98 TGCGCAAACTGGGGTACCCTGACAATATGTATGAATTGATGAAAGAGCCG 147
BSNT_05783___ 136 CAGAGAATGC------TCACTGTCCGCATTCCGGTCAAAATGGACAATGG 179
|||| |.||.||||||||.||.|||||||||||||||||
RBAM_034990__ 148 ------ATGCGGCTTTTAACCGTCCGCATCCCTGTCAAAATGGACAATGG 191
BSNT_05783___ 180 GAGCGTCA----AAGTGTTCACAGGCTACCGGTCACAGCACAATGATGCT 225
.||| |.||.|||||.||||||||.||||||||.|||||.||.
RBAM_034990__ 192 ----CTCAGTACAGGTTTTCACGGGCTACCGCTCACAGCATAATGACGCA 237
BSNT_05783___ 226 GTCGGTCCGACAAAGGGGGGCGTTCGCTTCCATCCAGAAGTTAATGAAGA 275
|||||.||||||||.||||||||.||.||.|||||.|||||.|.||||||
RBAM_034990__ 238 GTCGGCCCGACAAAAGGGGGCGTGCGGTTTCATCCGGAAGTCAGTGAAGA 287
BSNT_05783___ 276 GGAAGTAAAGGCATTATCCATTTGGATGACGCTCAAATGCGGGATTGCCA 325
.||.||.|||||..|.|||||.||||||||..|.||||||||.||..|.|
RBAM_034990__ 288 AGAGGTTAAGGCGCTTTCCATCTGGATGACTTTAAAATGCGGCATCACAA 337
BSNT_05783___ 326 ATCTTCCTTACGGCGGCGGGAAGGGCGGTATAATTTGTGATCCGCGGACA 375
|||||||||||||.|||||.||.|||||.||.||.||||||||||||||.
RBAM_034990__ 338 ATCTTCCTTACGGGGGCGGAAAAGGCGGCATCATCTGTGATCCGCGGACG 387
BSNT_05783___ 376 ATGTCATTTGGAGAACTGGAAAGGCTGAGCAGGGGGTATGTCCGTGCCAT 425
||||||||.|||||.||||||.||||||||.|.||.|||||.|||||.||
RBAM_034990__ 388 ATGTCATTCGGAGAGCTGGAACGGCTGAGCCGCGGATATGTGCGTGCGAT 437
BSNT_05783___ 426 CAGCCAGATCGTCGGTCCGACAAAGGATATTCCAGCTCCCGATGTGTACA 475
|||||||||||||||||||||||||||||||||.||||||||.||.||.|
RBAM_034990__ 438 CAGCCAGATCGTCGGTCCGACAAAGGATATTCCGGCTCCCGACGTATATA 487
BSNT_05783___ 476 CCAATTCGCAGATTATGGCGTGGATGATGGATGAGTACAGCCGGCTGCGG 525
||||.||||||||||||||.|||||||||||.||.||||||||.|||.|.
RBAM_034990__ 488 CCAACTCGCAGATTATGGCATGGATGATGGACGAATACAGCCGCCTGAGA 537
BSNT_05783___ 526 GAATTCGATTCTCCGGGCTTTATTACAGGTAAACCGCTTGTTTTGGGAGG 575
|||||.|||||.|||||.||.|||||.||.||||||.|.|||.|.||.||
RBAM_034990__ 538 GAATTTGATTCACCGGGATTCATTACGGGCAAACCGATCGTTCTCGGCGG 587
BSNT_05783___ 576 ATCGCAAGGACGGGAAACGGCGACTGCACAGGGCGTCACGATTTGTATTG 625
.||.||.||.||||||||||||||.||.||.|||||||||||||||||||
RBAM_034990__ 588 TTCACAGGGGCGGGAAACGGCGACCGCGCAAGGCGTCACGATTTGTATTG 637
BSNT_05783___ 626 AAGAGGCGGTGAAGAAAAAAGGGAT--CAAGCTGCAAAACGCGCGCATCA 673
|.||.||.||.|||||||||||||| || .||.||||.|||||.||||
RBAM_034990__ 638 AGGAAGCCGTTAAGAAAAAAGGGATTCCA--TTGGAAAATGCGCGGATCA 685
BSNT_05783___ 674 TCATACAGGGCTTTGGAAACGCGGGTAGCTTCCTGGCTAAATTCATGCAC 723
||||.|||||.||.|||||.|||||.|||||.||.||||||||.|||||.
RBAM_034990__ 686 TCATTCAGGGGTTCGGAAATGCGGGGAGCTTTCTCGCTAAATTTATGCAT 735
BSNT_05783___ 724 GATGCGGGCGCGAAGGTGATCGGGATTTCTGATGCCAATGGCGGGCTCTA 773
||.||.|||||.|||||||||||.||.||.||.|||.|.||||...|.||
RBAM_034990__ 736 GACGCCGGCGCCAAGGTGATCGGCATCTCAGACGCCCACGGCGCTTTGTA 785
BSNT_05783___ 774 CAACCCAGACGGCCTTGATATCCCTTATTTGCTCGATAAACGGGACAGCT 823
..||||.|||||||||||.||...|||..||||.|||||.||||||||||
RBAM_034990__ 786 TGACCCTGACGGCCTTGACATTGATTACCTGCTGGATAAGCGGGACAGCT 835
BSNT_05783___ 824 TCGGTATGGTCACCAATTTATTTACTGACGTCATCACAAATGAGGAGCTG 873
|.||.|.|||.||.|||.|.||..|.||.|||||.||.||...|||||||
RBAM_034990__ 836 TTGGCACGGTGACGAATCTCTTCTCGGATGTCATAACGAACAGGGAGCTG 885
BSNT_05783___ 874 CTTGAAAAGGATTGCGATATTTTAGTGCCTGCCGCGATCTCCAATCAAAT 923
||.||||||||.||.||||||.|.|||||.|||||.|||||||||||.||
RBAM_034990__ 886 CTGGAAAAGGACTGTGATATTCTCGTGCCCGCCGCAATCTCCAATCAGAT 935
BSNT_05783___ 924 CACAGCCAAAAACGCACATAACATTCAGGCGTCAATCGTCGTTGAAGCGG 973
.||.||..|||||||.|||.|||||.|.||.||||||.|.||.||.||||
RBAM_034990__ 936 TACGGCTGAAAACGCCCATCACATTAAAGCCTCAATCATTGTGGAGGCGG 985
BSNT_05783___ 974 CGAACGGCCCGACAACCATTGATGCCACTAAGATCCTGAATGAAAGAGGC 1023
|.||||||||||||||.||.||||||||.||.||.|||||||||||||||
RBAM_034990__ 986 CAAACGGCCCGACAACGATAGATGCCACGAAAATTCTGAATGAAAGAGGC 1035
BSNT_05783___ 1024 GTGCTGCTTGTGCCGGATATCCTGGCGAGTGCCGGCGGCGTCACGGTTTC 1073
|||||.||.|||||||||||..||||.||.|||||||||||.|||||.||
RBAM_034990__ 1036 GTGCTTCTCGTGCCGGATATTTTGGCAAGCGCCGGCGGCGTGACGGTGTC 1085
BSNT_05783___ 1074 TTATTTTGAATGGGTGCAAAACAACCAAGGATATTATTGGTCGGAAGAAG 1123
|||||||||||||||||||||.||.|||||.|.|||.|||||.||.||.|
RBAM_034990__ 1086 TTATTTTGAATGGGTGCAAAATAATCAAGGCTTTTACTGGTCTGAGGAGG 1135
BSNT_05783___ 1124 AGGTTGCAGAAAAACTGAGAAGCGTCATGGTCAGCTCGTTCGAAACAATT 1173
|.||.||.|.|||||||.|.|||||||||||.|..|||||.|||.|.|||
RBAM_034990__ 1136 AAGTCGCCGGAAAACTGCGCAGCGTCATGGTGAATTCGTTTGAATCCATT 1185
BSNT_05783___ 1174 TATCAAACAGCGGCA-ACACATAAAGTGGATATGCGTTTGGCGGCTTACA 1222
|||||.||||| ||| ||.||.|||||.||||||||||||||.||.||.|
RBAM_034990__ 1186 TATCAGACAGC-GCATACCCACAAAGTCGATATGCGTTTGGCCGCCTATA 1234
BSNT_05783___ 1223 TGACGGGCATCAGAAAATCGGCAGAAGCATCGCGTTTCCGCGGATGGGTG 1272
||||.|||||||||||.|||||.|||||..|.|||||||||||.|||||.
RBAM_034990__ 1235 TGACAGGCATCAGAAAGTCGGCTGAAGCGGCCCGTTTCCGCGGCTGGGTA 1284
BSNT_05783___ 1273 TAA 1275
|||
RBAM_034990__ 1285 TAA 1287
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